Nkoe022758.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004656.1:7623502-7624914[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00026 0.018 16.0 2.3 1 23 113 136 113 136 0.95 2 10 0.00013 0.009 17.0 3.1 3 23 145 166 143 166 0.94 3 10 0.044 3 9.0 2.5 2 23 174 196 173 196 0.95 4 10 2.8e-05 0.0019 19.1 0.1 2 23 204 226 203 226 0.93 5 10 0.037 2.6 9.3 3.6 1 23 233 256 233 256 0.95 6 10 0.0032 0.22 12.6 5.8 1 23 264 287 264 287 0.94 7 10 0.00011 0.0079 17.1 0.2 2 23 295 316 294 316 0.97 8 10 0.0052 0.36 11.9 2.2 2 23 324 346 323 346 0.96 9 10 1.1e-05 0.00078 20.3 5.3 1 23 353 376 353 376 0.97 10 10 1.3e-05 0.00089 20.1 4.9 1 23 383 405 383 405 0.96
Sequence Information
- Coding Sequence
- ATGGAGCCCAAACAAGAACCTATGATGTCACCATCTCCTATAATGTCACCGTCACCCATGATGCACTTCCAGCCACCCATGATGCCCATGCAGCCACCCATGATGCCCATGCAGCCACCCATGATGTCCATGCAGCCACCACAACAAATGTACCCAGACCCAAACATGATGCTGCCCACGCAGGAGTCCATGCCGATACCCAACCCGACTTTAAGCAGAAACTCTGCATCATACATCAGTGTCAACAGCACGACGCTAACTGAAGAGCAGAGAGAAATGTACGAGTCCCTACTGTCTACATATAAACCTCTATTATACCCTAAGAGGGAACGGCAGTATATCTGTCAGAAATGCAACAAGGAGTTCAAAAACTACCAAAATCTTTACCTCCACACAACTCGAGTCCATTCCTCTGAAGACTCGGCAGTGATATGCTCAGAGTGCgacaaaacatttaaaaacaaacattacttATACATGCATAAGATGAATAAGCACTATTCTGACACTATGCGATGCTACTGCCAGTTCTGTTTGCAAGAATTCAGAACAGAACGCGCTTTAACCATGCATGTTAAGCGCATACATCCGAATACTCTCCCAGAAATTAAGTGCCCGGTGTGTGGGAAAAGATTCGAAGTCCAGTATAAGCTGAGGTATCACATTGAAGCTGCTCATTCAGCCGAACGCAAGACCTTCACATGCCCTCATTGCGAGAAAACCTATCTGAGTTTGTTCAAAATGAATCAGCATATAAGGTTTCAGCATTCCACAGTGCCCGTGCCTCTCCATCAGTGCGTTTTCTGTCCGCTGCAATTCAAATCGCGCCATCATTTGCGACGACACGTCTTGAATATTCATCCTCCATTGGAGTCTAAGGTGTCATGCCCCGAGTGCTTGAAAGAGTTCAAGAATGATCAATATTTGAGAGAGCATATGCAGATACATTCCTCTGCAGAGGAGAAGGTTAAATGCGAGATTTGCGACAAGATATTCCATTCAACGCTCCGTTTGAAGAAGCATAAGAAGATAGTGCATCCAGGTGATAAACCCAAGTTCCGCTGCGAGGATTGCAACAAGGAGTTCAACCATGCTCACTATTTGAAACGGCACAGGAACTCTGTGCATGTGACGGCTGAATGGACGCACGCCTGCCAGCAGTGTGGGAAAAAATTCAAGACCCGAAAATACCTTAATAACCACCTGCAAAGGCACGAGCAGCAGCATTTGAAGCGTATATCTCAGATGGTGCGCACTGTGATGGCTGATGACGGGTCGGAGAAGGCCCCGGCGCCGAAGCGTCAGTTGCGAAAGCGCACTAAAAAGCCGGCGCCCGAGATCAAGTTTACGTTCGTTAAATGCGAGCCGGTTACAAGCTCGGAGTCGGAGGAGAGCGAATCGGAAAGCGATTAG
- Protein Sequence
- MEPKQEPMMSPSPIMSPSPMMHFQPPMMPMQPPMMPMQPPMMSMQPPQQMYPDPNMMLPTQESMPIPNPTLSRNSASYISVNSTTLTEEQREMYESLLSTYKPLLYPKRERQYICQKCNKEFKNYQNLYLHTTRVHSSEDSAVICSECDKTFKNKHYLYMHKMNKHYSDTMRCYCQFCLQEFRTERALTMHVKRIHPNTLPEIKCPVCGKRFEVQYKLRYHIEAAHSAERKTFTCPHCEKTYLSLFKMNQHIRFQHSTVPVPLHQCVFCPLQFKSRHHLRRHVLNIHPPLESKVSCPECLKEFKNDQYLREHMQIHSSAEEKVKCEICDKIFHSTLRLKKHKKIVHPGDKPKFRCEDCNKEFNHAHYLKRHRNSVHVTAEWTHACQQCGKKFKTRKYLNNHLQRHEQQHLKRISQMVRTVMADDGSEKAPAPKRQLRKRTKKPAPEIKFTFVKCEPVTSSESEESESESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -