Nkoe008558.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- znf711
- Assembly
- GCA_963924495.1
- Location
- OZ004636.1:12339305-12349524[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.2 14 6.9 0.0 1 23 1006 1029 1006 1029 0.94 2 13 1.7 1.2e+02 4.0 0.3 1 23 1103 1125 1103 1125 0.92 3 13 9.1e-06 0.00063 20.6 2.3 2 23 1128 1149 1127 1149 0.97 4 13 9.4e-05 0.0065 17.4 3.5 1 23 1155 1177 1155 1177 0.99 5 13 0.00011 0.0074 17.2 4.2 1 23 1183 1205 1183 1206 0.96 6 13 0.11 7.7 7.7 1.1 5 23 1219 1237 1216 1237 0.95 7 13 0.0029 0.2 12.7 1.5 3 23 1244 1265 1243 1265 0.97 8 13 0.019 1.3 10.1 0.2 2 23 1284 1304 1283 1304 0.97 9 13 0.0027 0.19 12.8 0.7 3 20 1312 1329 1310 1332 0.88 10 13 0.00029 0.02 15.9 0.7 1 23 1340 1362 1340 1362 0.99 11 13 0.015 1 10.5 7.3 1 23 1368 1390 1368 1390 0.98 12 13 8.2e-07 5.7e-05 23.9 1.4 1 23 1396 1420 1396 1420 0.98 13 13 0.0011 0.079 14.0 5.1 1 23 1426 1448 1426 1449 0.95
Sequence Information
- Coding Sequence
- ATGGAGCAACTAGTGCAGTGCCCTGTGTGCACCTTATACCTTCACAATGGGATGTCTCTGGAATGCCATCTGGACACCCATCCTAAGGACCAAGTTATTAAAGCACTGTGTAGCTTGTCAGCCTCCAAGAGTAATTATGGCAGCAGATGTTCCACACCGATGCATTCTGAAAGGTCATACAGAAGTAGATCCCGGACTCCTGCTGTGGAAGACAGTAATTCCAGATGGAGTTCTGGACACAATAATTCAGACCAGGAGCGCTACTGGCACAGGACCCCCACTGACAGCCGAGAATCCAGTGTGGCTCAAACCAGACCACTGGGTCGTAACTTAAGAACTCCAACAAGGCCATCCAGACCGAGCACTTCCAGTGCAGATACACCATCTGATCTAAGAATTGGTGACCTTACTGTTGAAAATGTAACTAAAAATCTGCCCAGCACTTATTCCAAGTATACTGCTGGTTCTTTATCTATAAAGTCAGATAAAGCTTCAACAACATCTGGTCTCAAACCCCCTGGATATGGATTTCAAAATCAATATATTGTACCAGATGTCCCAGAAGAAAcagaaattaaatattcaaaaagTGCCGAATACAACTTACCTAGAAATTCTACAAATAGTGTCTTTGCATATAACCTTCAATCTAGTTCTTCAAATGTGAAACTACAGATGCCTAGTTCATCTAAAAGAAACAGTGAATACCTGAATGTAGATGTTGGTAACACAGAATTCTTAATACCTAAGAATAACAATTTATCATTAGTTAAAAGTAATGCGGGGCCCATACCTTATGTCCCACAGAGAGGTAAACCTGTGCACCTTATGTTACCCCCAACCCAAGCGTTTGTGCAGAAAGCTTCTCAGAACAACATAATTATGACAACAAATGTAGCAACCTCTTCTACTGTACATAGCAAAAATGTTCCCGCACCTATACTTCCTAATCAATTTACTACCTTAACACCAAACTTTGTTCCTAACAAAACTGTAGTGACACAAAACTCACAATTGATTTATCATGAGATGGTCCATAGCATTGATGGAAAGTCTTACATACACAGTGTGCCAAATGTGCTCAGTGGTCCACAAGGTATTACCCAGGCTAGCTCTATGTATCAGAATTTGATGGTTGTGGATCCTTATGGAAATACATCATGTGTGTATAACCCACCATTAATAAACCCACAAACAACTATAACTTTTAGTCAGACTGTGAGTAGCGCAGAGAAGATGACAAATCTTACTAAGAAAGAGGATCCAGATAAAACCCTTGTTATTGAAATTGGGCCCAATCTATGTAGTGATTCTCAAACTAGTACATTAGATAGTTGTGAAGAATATGCAAGATCTGGCAGTGCACAGTCTAAAAATGATGATAAAGATGATGATAGGGTTTCTACACCAGGTATGAAGAAGGGTTTGAAGATTTTGAGTAATATCAAGGTTGAGGTTCCTGTGCAGCATCACAAAAGTATGCTCAATACCATAGTAGATCTTACAGGAACTAATGATGTTGATTACAAAGACATACAGTATCCTGCTACTTCTATTCAGGATGTTGATGTATCTTCGAATGATACAGACAAAGCTATAGACTGTACTATGCATCATAAAACTTCACGTGAGAAGTGCTCTAGCAGTTTCTCAGTCATAAAAAATGTTGGGAAACCACCTGGGTGCAAAGAAGCACCAGCTAAACTTTTTATCAAAAATGATGATAGTTCTTCAGTTCTTGATCTAATTTGTAATGAGAAGCCATCTGTGTCACCTTGCAGTGAGTTATCTGAGAATGGTGATAATGCCATTGATCACACCCCACTACCAATTAAAACTGATGTAGAGAATCTTACCATCAAGAAGGAAGTTCTTAAAAAGTCCGAGAAAATGATTCCAAAGGCATATTGGACTCATGCATTGAGATCAAATgacacatatataaaaaaacacaagaaagtcctgaaaattaaaaattgcaaaTATCCATCTCAAAAGTCCTCAAAAATAGATGATGTCAATGATCAGCCATCTTGTTCAGGAGTGTCTGCAAATCTGGAAGACCATCATAGTATTAGAGTTCGCAAATTAGAGCCAAAAGTTGATGAATGTCACAAAGGTGCTTTGGATGCCAATACTGAAGAACAGTCAATGGAAATAGAACCTGTGGCACATTCTTCTTTCAACCAATCAAGCAGCTTTGTACCAGGCaatcttaaaattaaagtaGAGGCTATTAATAGTAATGAAATGTTTAACTCTGAAGATAATGATGCTGATGCAGGCCACAAGGAACTTACACCATTGCAATCAATGCGGCCAATAAACGTCATAGCTTACAACAATATGTCTGACAATTTTAGTGACAGAACAAATCATAAAGAATTGTTGGATCTGGAAACTTCTAAACGACAATTTGCTAATATCATGAATGAAAACTACTTTGGAGACAATGGTTATTCAGATTATTTTACTGCTGACAGAGCAGAGTCATTTGATAATAACAGAGATTCCGCAAGTATGTCTAAAGATTACAAGAAAGGGGAAAGCGGCATGTATACCTGGAATGAGATGCCTCAGAAAGAGAGTTACACACCTAATTTTATTCACGATAGTTACAAGATAGCAGACAATTTGCCATGCTCAAACTTCCAAATTGGCACTAGTGGGACTTTAGATAGAGTTGAGTTTGGAGGGGACCAGGAGATAGATGTTGATGGTGATATGTGTGAGCAGGACAGCAAGTTAGATGTGTTAAGCGAGAGTAGAAGTGAGAGTGAGATAGGTTTAGATATTTGTTCAGATGAGAAAATGCCACCGCGAGGTGAACTCAGTGGTCAAGAAAGCAATGGTGATATGGACACTGCATGGCCTGGGATTTATCCAGAAGTGATACCTTCGGAACCCTATGACTTGATGGCTCGCGAGAGTTGGGTCTCAGATGGATCTGATGTGGATATTACTGAAAGGAGAGATGACTTAGAGGAAGATCTATCGATTATTAATAAGTTGCCCTACGCGTGCCCTTATTGCGACGATCGTCTTGCCACTTTGAAGGAGTTGGCCGTGCACCGTACCGTCATGCATGCGTCAACGTCTGCGGCATTGGCCTGCAGTAGCTCCAATCACCTCTACAGGAGGCTGACAGACAAGTCTATAAAGAAAGAGGAGAAACCGGATACTACCGTTCTGACAGAAGCTCCAACAGAAAGCAAGGCCGCTATCACTTCAAACATATACACGGAAGTGCCGGAAACGAAGCCCAAGATTGAGTTTATTAAAAAAGAGCCAAGAAAACGTAGGGACTACACGTGCCCTACTTGTAAGGTTGACCTACGGAAGGAGTTGCCGTTTAGGGAACATTTGAAGATACATCCGCTGGAGTGTCTCACTTGTGGCAAGTGTTTCTACAAGAGGGCCAATCTGAATCTGCATATTAGGACACATATTGGTATACGAAAGTACAAATGCGAAGTATGCGAGAAGCGGTTCGTGACCAAACAGAAGTTGCAGGAGCATCACAACTCCCACACGGGACGCTCACCATACAAGTGTACTGTATGTGATCAGACCTTCCGGAGATACTCTAACATGGTGCAGCACAGAGACCGCCACCATCTGAACAAGAAGGCCAAAATCCACGACTACGTGTGCCACTGCGGCGAGGTGTTCCACTCGCGCGCCAAACTGCGCTGGCACGCAGAGATACACGAGGACCGGCCCAAGGCGTGTCCGCACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACTAGACATGTGAGACGCGCGCACAACGCGTGCTACGTGCCAGAAGGAGTCGTGTCGCTTCGGGGCGCTGAGAATGTTACCTGTCCTATATGTAAACAGatatacCTTAGAGCAAATTTGAAGACGCATCTACTAACGCACAGCGGGAAGCGACCCTTCCTCTGCATCATATGCAACAAGTCATTCACCACCAAATGGAACCTCAAACTGCACAGATGGGTGCACATGAGTCGCTCCTCGAAACCTTTTAAATGTAGTCTGTGCAAAGGTGCCTTCATACGACAATCGGAATACGTCTCCCATATGAATTCGCACAAATCTGTCCGCCCGTACACTTGCAACTATTGCGGCTGTCAGTTTATTAGGAAGTACAATTGCCAGCGACACGTGAAAGAACACGAAATGGCAAAGAGATACGTGTGCAAGGTCCCGGATTGCGGCAAAAGTTTCCATAGGAGCTACTACTTGACGGAACACATGAGGGTACATAGCGGGGCGCGACCGTTCTCGTGTAATATTTGCGGCAAAACTAGCAGCAATAAGTCTAATCATAATAAACATGTTAAAATACACCACGCGCGGGAGCCGGTGGCCACCGAAGCGTAG
- Protein Sequence
- MEQLVQCPVCTLYLHNGMSLECHLDTHPKDQVIKALCSLSASKSNYGSRCSTPMHSERSYRSRSRTPAVEDSNSRWSSGHNNSDQERYWHRTPTDSRESSVAQTRPLGRNLRTPTRPSRPSTSSADTPSDLRIGDLTVENVTKNLPSTYSKYTAGSLSIKSDKASTTSGLKPPGYGFQNQYIVPDVPEETEIKYSKSAEYNLPRNSTNSVFAYNLQSSSSNVKLQMPSSSKRNSEYLNVDVGNTEFLIPKNNNLSLVKSNAGPIPYVPQRGKPVHLMLPPTQAFVQKASQNNIIMTTNVATSSTVHSKNVPAPILPNQFTTLTPNFVPNKTVVTQNSQLIYHEMVHSIDGKSYIHSVPNVLSGPQGITQASSMYQNLMVVDPYGNTSCVYNPPLINPQTTITFSQTVSSAEKMTNLTKKEDPDKTLVIEIGPNLCSDSQTSTLDSCEEYARSGSAQSKNDDKDDDRVSTPGMKKGLKILSNIKVEVPVQHHKSMLNTIVDLTGTNDVDYKDIQYPATSIQDVDVSSNDTDKAIDCTMHHKTSREKCSSSFSVIKNVGKPPGCKEAPAKLFIKNDDSSSVLDLICNEKPSVSPCSELSENGDNAIDHTPLPIKTDVENLTIKKEVLKKSEKMIPKAYWTHALRSNDTYIKKHKKVLKIKNCKYPSQKSSKIDDVNDQPSCSGVSANLEDHHSIRVRKLEPKVDECHKGALDANTEEQSMEIEPVAHSSFNQSSSFVPGNLKIKVEAINSNEMFNSEDNDADAGHKELTPLQSMRPINVIAYNNMSDNFSDRTNHKELLDLETSKRQFANIMNENYFGDNGYSDYFTADRAESFDNNRDSASMSKDYKKGESGMYTWNEMPQKESYTPNFIHDSYKIADNLPCSNFQIGTSGTLDRVEFGGDQEIDVDGDMCEQDSKLDVLSESRSESEIGLDICSDEKMPPRGELSGQESNGDMDTAWPGIYPEVIPSEPYDLMARESWVSDGSDVDITERRDDLEEDLSIINKLPYACPYCDDRLATLKELAVHRTVMHASTSAALACSSSNHLYRRLTDKSIKKEEKPDTTVLTEAPTESKAAITSNIYTEVPETKPKIEFIKKEPRKRRDYTCPTCKVDLRKELPFREHLKIHPLECLTCGKCFYKRANLNLHIRTHIGIRKYKCEVCEKRFVTKQKLQEHHNSHTGRSPYKCTVCDQTFRRYSNMVQHRDRHHLNKKAKIHDYVCHCGEVFHSRAKLRWHAEIHEDRPKACPHCSDKFVHAASLTRHVRRAHNACYVPEGVVSLRGAENVTCPICKQIYLRANLKTHLLTHSGKRPFLCIICNKSFTTKWNLKLHRWVHMSRSSKPFKCSLCKGAFIRQSEYVSHMNSHKSVRPYTCNYCGCQFIRKYNCQRHVKEHEMAKRYVCKVPDCGKSFHRSYYLTEHMRVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -