Nkoe020894.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004654.1:4087145-4098117[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.063 4.3 8.5 2.2 2 23 182 203 181 203 0.96 2 11 0.00014 0.0094 16.9 1.8 1 23 226 248 226 248 0.96 3 11 0.00021 0.015 16.3 0.2 1 23 254 276 254 276 0.98 4 11 0.01 0.71 11.0 0.2 2 23 283 306 282 306 0.94 5 11 4.4e-05 0.003 18.5 1.0 1 23 313 335 313 335 0.98 6 11 0.0024 0.16 13.0 0.3 1 23 341 364 341 364 0.97 7 11 0.031 2.1 9.5 3.8 1 23 373 395 373 395 0.96 8 11 0.0043 0.29 12.2 2.1 1 23 401 423 401 423 0.94 9 11 1.7e-06 0.00012 22.9 1.4 1 23 429 451 429 451 0.96 10 11 2.6e-07 1.8e-05 25.5 1.1 1 23 457 479 457 479 0.98 11 11 0.015 1 10.5 3.0 1 21 485 505 485 506 0.95
Sequence Information
- Coding Sequence
- atgactgagagccacgggccCTTAACAGTGAATCATGTCGGGGAAAAGATAATTACAAGAAATCAATATGATAATGACAAATTACCAAACAGAATATGTGCAGAATGTTCACAAAAATTGGAAGACTGCTACaatttttgtattattgtaAATCAAAATGAATCTCTATTACAAGAACATCTAATTAAtaatacattaaatattttatttcaaaacctAGAGgactgtaaatataataaagatgATATAGATAATAAGGAAAATATTGTGAATGATGGAAAAGAAAATGTTAGTGGTGTCTATGATAATGATGAAGCTTATGTTATCATCAAAGATGAAATATCATCACCGGATGAGCATATCTATAGCTCTGATGAGTTGACATTATCCACTATAAAATCTTTGAAAGACAAATCTcagataaaaaagaaaaaatacacaaaaaaaggCAAAGAAAAAGAAACtcttaaaaaagaaaatttaaaaaatggtattgataaatttttatttcctgATGGGACACCAGAAGATGAAAAGCAGTGGAAGTGTTTGACATGTTTTCAATTATTTGATAAGAGAAGTTATTTAAGAGAACATTATAAACAGCATTCTCTTGTTAAAACTAAGGATCTCAATCATTTTAAGAAAGATGTGCATGAAGACAGTTGTAACAGTTACAAATGTGGAAAATGTGACAAagaatttgaaaataaacaatTGTTTACACAACATAAGATATTACATCAAGATGATAGGccttttgtttgtaatttatgtGgtaGGACATACAGACTATTGTCAGATATAATTCGCCATGGCCGTGTGCACAGTGGGGTAAAACCTCTTGTGTGCAAGTACAATGATTGTGGATATAGCACAGCTTACTATGGCGCCCTTAAATCTCACGAACAAAGACATTGTCCTGAACAATATAAGtatTCATGTGATAAATGCGGTAAAGGATTCAATGTAAAGACGTGGTATGAACAGCATCAGAACTATCACACTGGACAAAAGCCGTTTGTCTGTGATATATGTGGGAATGCCTACTTCATGGCtaaATACTTGAAAACACATAGAAATTCCGCCCATCCGGAGGCTTCAAATCAAAGAAGGCATATTTGCGTCCATTGCGGTATTTCATGTGACAACAGGACTGTGTTGAATACGCATTTAAAGGAGCACGGGTTCACGAAGAGTTTCTTGTGCGATATTTGCGGTAAAAGTTTGTCGAACTTTGAGCACCTCAAGTTTCATAGGAATATTCATTTGGGAGAGAAACCGCATGCATGCAGtacaTGCGGCAAGGCGTTTGTGAAAAAGAGCAATCTGAAATTACACGAACGAATACATACTGGCTTGAAGCCTTACGTGTGTGGTCATTGCGGGAAAGCGTTCTCGCAGAACAGTACATTAGTTGTTCATACTAGgtaTCACACGGGATCTCGTCCCTACGAATGTCGCATCTGCTCAAAGTCCTTTGTCTGCCGCAGCAAATTGTCGACGCATCAGAAGTCTTGTATTTGA
- Protein Sequence
- MTESHGPLTVNHVGEKIITRNQYDNDKLPNRICAECSQKLEDCYNFCIIVNQNESLLQEHLINNTLNILFQNLEDCKYNKDDIDNKENIVNDGKENVSGVYDNDEAYVIIKDEISSPDEHIYSSDELTLSTIKSLKDKSQIKKKKYTKKGKEKETLKKENLKNGIDKFLFPDGTPEDEKQWKCLTCFQLFDKRSYLREHYKQHSLVKTKDLNHFKKDVHEDSCNSYKCGKCDKEFENKQLFTQHKILHQDDRPFVCNLCGRTYRLLSDIIRHGRVHSGVKPLVCKYNDCGYSTAYYGALKSHEQRHCPEQYKYSCDKCGKGFNVKTWYEQHQNYHTGQKPFVCDICGNAYFMAKYLKTHRNSAHPEASNQRRHICVHCGISCDNRTVLNTHLKEHGFTKSFLCDICGKSLSNFEHLKFHRNIHLGEKPHACSTCGKAFVKKSNLKLHERIHTGLKPYVCGHCGKAFSQNSTLVVHTRYHTGSRPYECRICSKSFVCRSKLSTHQKSCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -