Nkoe004590.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- prg
- Assembly
- GCA_963924495.1
- Location
- OZ004632.1:5091863-5093710[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.026 1.8 9.7 1.9 1 23 178 201 178 201 0.93 2 10 2 1.4e+02 3.8 0.4 1 23 207 230 207 230 0.90 3 10 3.1e-06 0.00021 22.1 1.4 1 23 236 258 236 258 0.96 4 10 3.1e-07 2.1e-05 25.2 2.8 1 23 264 286 264 286 0.99 5 10 1.6e-06 0.00011 23.0 0.1 1 23 292 314 292 314 0.97 6 10 0.00065 0.045 14.8 0.8 1 23 320 342 320 342 0.97 7 10 8.1e-05 0.0056 17.6 1.0 2 23 440 462 439 462 0.95 8 10 7.2e-05 0.005 17.8 2.7 1 23 468 490 468 490 0.96 9 10 1.2e-05 0.00085 20.2 4.2 3 23 498 518 496 518 0.98 10 10 0.00099 0.069 14.2 0.0 5 23 529 547 526 547 0.93
Sequence Information
- Coding Sequence
- ATGGACGATTCTTTCATAATAGCTAATTTCCACGACGTGTGCAGGCTGTGCTTGAGCAAAAGCTCGCTAATGATATCTATATTCGCTAACTCTCCCGACGACGACATAAATGTACCTCTAACCTCAAAGATCGCAGATTGTTTTGAAATTCAAATGGCACCTAATGATGGTTTGCCAGGATTAATATGCTACAGATGTCTTTTCCAAGTAGACAAATGTTCAGAATTTAGACACCAATGTATCCAGAGTGAACTAAGACTTAGGCAGCTGACAACTCGTGGTTCAGAACTAGACAATTCCAATTCTTCAGAACTGAGCAACTACAACCATTGTCCTGAACCTATactcaaaattaaaaatgaagaGTATATTGTTGAAGACAGTGTTGTTATGGTTGTGGACCCCAGTATGGAATATAATTCTTCCGATGAATCTGACAACACAGAACAACCTGAAGGCATCCAAGAAGTTACTGAAAGGGATAACACACCTGATGGAGAACAAATAACAGACTCATTCTTTAAAAATGTCTTTATGTGTCAGTATTGTGATCAAGCATTCATTTCCCAGGACAAATGTAAAGAACATGAACAAAGTGTGCATGACCCTAATCTACCTTTTAATTGTATGGAGTGCAGCCTAGTGTTTGCAGAACGTACTCAGTCAATACAACACACCAAGCAAGTGCATGGTAATGATAAACCTTACCACTGTCCTGAATGTGAGAAGTCATTTGGTCGGAGATCAGACCTGCGCAAACATTCCATAGTCCATACAGGTATCAGGCCATACCAGTGTCAGTACTGCTTGAAAAGCTTTTCACGCAACACCAAcctaagtaaacatctaaggattCATGCTGGCAGGAAGCCCCATGTATGTCCATTATGTCCCCgcagttttgtaaataaaggTGACTTGGAACGCCATGTACTTGTACACTCTGGCATGAAGCCTTATGCTTGTCGAAAATGTCCTCTTACATTTGGACGTAGAGACAAACTACTTAAGCATGAATTGAGACACGGCCCCATGAGTCCAGAACATAAAATGGGTGCAGAATCTGGTATAGACCATGGCACACAAGATATGATTGTTAATGTTAACCCTTTTAGTAACTTGCTAACTTCGCCCAACCAAGTTCTTGGTGATCAAGCCAACATGGACTATGATTTTCCCCGAGTACCTGATCACATCTCTGGTGAGAATAGTTTTCTTAGTCAAGTTCAGAAGAATCCTTCTACATCTGGTAAACAAGTTCAGAGCTCACCACCGAAACCTAAACCTATACCAATAAAAAATAgaccaaaaaatataaaatgccaTCAATGTCCAAAAAGATTTTCTTCTTTAGATGCCTACAAGACTCATGTCTCTATAGCCCACATTGGTTCAAGAGTGTTCCAGTGTAAGGTTTGCTTTAAGAAATTTTCAAGAAAGAGAGAACTAGATCGTCATTCTGCCATGCACTCTGGTATAAGACCATTTGGTTGCCACCAATGTGACAAAAGATTTACTAGAAAGGATAAATTGGTTCGGCATGAGAAAACCCATGATGTTATGGTAGCCAACATGCCATGTATAGAATGTGGTGCTACTTTTGATAAGAAAGATGATTTGGTCGCGCATATTAAATCCCATTTTGCTGACGATTTTGAGGACAAAGAATCTAATGACAAAATCAAGAAGGAATCTGAAAGTGAATTCACATTAGATGATACCTACTATGATTTGGAAACATGA
- Protein Sequence
- MDDSFIIANFHDVCRLCLSKSSLMISIFANSPDDDINVPLTSKIADCFEIQMAPNDGLPGLICYRCLFQVDKCSEFRHQCIQSELRLRQLTTRGSELDNSNSSELSNYNHCPEPILKIKNEEYIVEDSVVMVVDPSMEYNSSDESDNTEQPEGIQEVTERDNTPDGEQITDSFFKNVFMCQYCDQAFISQDKCKEHEQSVHDPNLPFNCMECSLVFAERTQSIQHTKQVHGNDKPYHCPECEKSFGRRSDLRKHSIVHTGIRPYQCQYCLKSFSRNTNLSKHLRIHAGRKPHVCPLCPRSFVNKGDLERHVLVHSGMKPYACRKCPLTFGRRDKLLKHELRHGPMSPEHKMGAESGIDHGTQDMIVNVNPFSNLLTSPNQVLGDQANMDYDFPRVPDHISGENSFLSQVQKNPSTSGKQVQSSPPKPKPIPIKNRPKNIKCHQCPKRFSSLDAYKTHVSIAHIGSRVFQCKVCFKKFSRKRELDRHSAMHSGIRPFGCHQCDKRFTRKDKLVRHEKTHDVMVANMPCIECGATFDKKDDLVAHIKSHFADDFEDKESNDKIKKESESEFTLDDTYYDLET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -