Nkoe021669.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004655.1:5620801-5624686[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.12 8.6 7.6 0.2 3 23 50 71 48 71 0.94 2 17 0.008 0.56 11.3 0.1 1 23 122 145 122 145 0.96 3 17 0.00021 0.015 16.3 2.9 2 20 150 168 149 172 0.88 4 17 0.31 22 6.3 0.1 2 23 178 200 177 200 0.93 5 17 0.015 1 10.5 5.3 1 23 207 230 207 230 0.97 6 17 0.00045 0.031 15.3 1.0 2 23 237 258 236 258 0.94 7 17 0.011 0.76 10.9 4.1 1 23 264 286 264 286 0.97 8 17 0.00011 0.0076 17.2 0.0 1 21 292 312 292 313 0.95 9 17 0.006 0.42 11.7 1.6 1 23 350 373 350 373 0.95 10 17 6.6 4.6e+02 2.2 0.3 2 23 400 422 399 422 0.91 11 17 0.052 3.6 8.8 0.6 2 23 445 467 444 467 0.95 12 17 7e-06 0.00048 21.0 2.0 3 23 475 496 473 496 0.95 13 17 0.0084 0.58 11.3 0.9 2 23 530 552 529 552 0.96 14 17 0.0051 0.35 12.0 0.3 3 19 559 575 557 580 0.88 15 17 0.00016 0.011 16.7 0.1 2 23 587 608 586 608 0.96 16 17 0.00031 0.021 15.8 0.8 1 23 614 636 614 636 0.98 17 17 1e-05 0.00071 20.5 1.6 2 23 643 664 642 664 0.96
Sequence Information
- Coding Sequence
- ATGTGTTTCTACTGTTGTACAACTTTCAATGATTGTTGCGATCTAAAAAGGCACACCAAAGATGAACATGACGAAGCAATTCTGAGTGGGGTATTAAGAAATGTATCAGGACGGTCCAGCATCAAAGTTGATGTCAGCGACATGGCATGCACAAAATGTCAGAAGGACATATCCAATTTTCAAGAACTGATAGACCATCTACTCAATGCACACTCAGCTAATTTCGATATCACATACAGCAAATTAATAATCCCATTTAAATTATCAAATGGCCCGATGTGTTGTCTTCATTGCGGTGATATGTTCAGATTTTTTGGACCTCTTTTAGGTCACACGCATAAAGCGCACAGCGATTTTAAATTGTACCTCTGCGAGGTTTGCGGCCAAGGATTCTTTTCGAAATTGAACGTGGGCAGTCATATAAAGACAGCGCATCCTGGCAATTTAAAATGCGAGATTTGTGATAAGGCCTTCTCCTCATATTATACTTTAAGGAAACACTGCGACACTTACCACGAGACGGATAAGTTGAAGTGTCCAAAATGCCCGACGGTTTTGGGTAGTATTTACTTGAAGAAACGACATCTTGCCATAGTTCACGATGTCAAAAGCGAGCAATTCCACTGCGATATATGCTCAAAGTTGTTCACCATGAAGTGTAAATTGGAAGCCCATAAGCGACGGGTCCATTTAAAGGAGAGGTTGATTACTTGCGAGATTTGCGGCTTCAAAGTCTTTGACAGTCACCAGTTGAAGAATCATTTAATAACTCACACGAAGACCAGGCCCTTTCAGTGcgaattttgcaataaaacttTTCAGAGACGTAAAACTTTAGACTTTCATCGTAGGATACATACAAATGATAGGCGATACCCATGTGTGCAATGTGGTAGAGCTTTTGTGCAAGCTGCAAGCCTTAAAGTGCATATACAGCAACCTGATGTGACATTTGGAAGAGTCAAGAATATAAGTGAACTAAGAAGATGCGCAACAGAGATTTTGGATAAATCAACTGCCCTTCCTTTCCGGTGGTACGGGAAAAGCTACAAATGCTTTTATTGCATGACTCCGTTCACCGAAGCTAGCCATCTCAAAGACCATGCGAAGGAAGAACACAGCAACGCAAAACATGCTAATGTTGTCAAGAATTATCTCTACAATTACAAGCCTATTTACGTGGATATCTCGGATTTATCTTGCAATATATGTTGTGCTATAACTCCCACTCTTGACGATTTCTTCGATCATATCAATAATGCCCACAATGCTAACCATGCTAGTGATTTACGTAGTGTTTTCATTGGTTTTAAATTAACAGACGGTAAAGTTTCTTGTTTGTTCTGCGGCATGGTCTACGACTACTTCGGCTCTCTATTGAATCACATACATAAATCACACGAGAGAAGTGGATGTTTGCTGTGCCATCATTGCGGAAAAGGTTTCCAAAGGCAAAGCTTATTAGCGAGACATATTAAAGGGATTCATGAAAAAACCGGATACCATTGCCGCTACTGTGACAAACAGTTTCAAAAAGAACACCAATGTCGATACCATGAAGCGTCCGTCCATAAAGAGAGGAACCTCAAATGCCCCCAGTGTCCGGAAAAGTTTTACGGAAATAATCAAAGATTGCATCATTTGCGAATCGTCCACAAGCAAGATTGCGTTAATTGCGAGAAATGCGGAAAGCAATTCCCTGTACGGAGCCAATTGGTCTACCATGATAAGAGAGTACATTTAAAAGAGAAAAACTCTGTGTGTGGCATTTGTGGGCGAACTTTCTTTGGGGAGGCTAATTTAAAATTGCACATGGTGTCGCATGCCGATGACAAGCCGTTTTCGTGTAGATATTGCAAAAAACCTTTCGCTAGAAAGAGAACAGTCGCAATTCATGAGCGTATACATACTAACGATAAGCGATGCGTTTGCAAAATATGCGGAGAGGCATTCGTCCAAACCACcagtttaaaattacatatgAAGAAACATTGGAGTGTGTTGAATAGGAATgtggaattaaattaa
- Protein Sequence
- MCFYCCTTFNDCCDLKRHTKDEHDEAILSGVLRNVSGRSSIKVDVSDMACTKCQKDISNFQELIDHLLNAHSANFDITYSKLIIPFKLSNGPMCCLHCGDMFRFFGPLLGHTHKAHSDFKLYLCEVCGQGFFSKLNVGSHIKTAHPGNLKCEICDKAFSSYYTLRKHCDTYHETDKLKCPKCPTVLGSIYLKKRHLAIVHDVKSEQFHCDICSKLFTMKCKLEAHKRRVHLKERLITCEICGFKVFDSHQLKNHLITHTKTRPFQCEFCNKTFQRRKTLDFHRRIHTNDRRYPCVQCGRAFVQAASLKVHIQQPDVTFGRVKNISELRRCATEILDKSTALPFRWYGKSYKCFYCMTPFTEASHLKDHAKEEHSNAKHANVVKNYLYNYKPIYVDISDLSCNICCAITPTLDDFFDHINNAHNANHASDLRSVFIGFKLTDGKVSCLFCGMVYDYFGSLLNHIHKSHERSGCLLCHHCGKGFQRQSLLARHIKGIHEKTGYHCRYCDKQFQKEHQCRYHEASVHKERNLKCPQCPEKFYGNNQRLHHLRIVHKQDCVNCEKCGKQFPVRSQLVYHDKRVHLKEKNSVCGICGRTFFGEANLKLHMVSHADDKPFSCRYCKKPFARKRTVAIHERIHTNDKRCVCKICGEAFVQTTSLKLHMKKHWSVLNRNVELN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -