Nkoe023128.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004657.1:6217493-6221525[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00011 0.0075 17.2 0.8 1 23 137 160 137 160 0.95 2 18 0.0018 0.13 13.4 0.7 1 23 169 192 169 192 0.98 3 18 0.11 7.6 7.8 0.2 3 23 206 227 205 227 0.96 4 18 2.2e-05 0.0016 19.4 1.7 1 23 236 259 236 259 0.97 5 18 0.0007 0.049 14.7 2.6 1 23 269 292 269 293 0.97 6 18 0.0021 0.14 13.2 0.1 1 23 314 337 314 337 0.97 7 18 0.0003 0.021 15.8 2.0 2 23 347 369 346 369 0.96 8 18 4.4 3e+02 2.7 2.2 2 19 374 391 373 394 0.89 9 18 0.011 0.78 10.9 1.7 1 23 398 421 398 421 0.93 10 18 0.0011 0.076 14.1 1.6 2 23 430 452 429 452 0.95 11 18 2.1e-05 0.0015 19.5 1.2 1 23 457 480 457 480 0.94 12 18 0.00068 0.047 14.7 1.8 3 23 491 512 490 512 0.91 13 18 0.11 7.6 7.8 1.6 1 23 532 555 532 555 0.93 14 18 0.038 2.7 9.2 0.7 2 23 592 613 591 613 0.97 15 18 0.17 12 7.2 0.8 1 23 619 643 619 643 0.98 16 18 0.019 1.3 10.2 2.1 1 23 650 672 650 672 0.97 17 18 5.5e-05 0.0038 18.1 0.9 1 23 679 701 679 701 0.98 18 18 0.34 24 6.2 1.9 1 23 707 730 707 730 0.95
Sequence Information
- Coding Sequence
- ATGACATCACTGTTAACGAATCAAGATGATAGGCTCGATCTCTCACACCAGCCAGCTGATGACAAAAGGGTGGaagttaaaaagaaaaagaaaaagaagaagagaaaaaatatggagGACCCATTTAAAGACATCAAAGAATCAAACTTTGCTACAACAATAATAGTCGAAGACGAGAAGACTTTTGACACCAGTGCTATAGTTAAAGTTGAAGATATAGAGGTTAGCGTAGACTGCAATGAGTTTTTGCAAAGTGAAATGCTAATTGACTCGTCCCAAGATGACAGTACTATGGAAATGGATCAGAACAACTCTGACCAGAACGCCGCGCGTCGCCCATCTTTCGAGTCCGACACGTACCCATCCAACGAAGAAAACAACTTTATACCTCTCGAAGTGTCCCCCACGTACATCTGTGATGAATGCAATTTAGTATTTAGTAACGCCACCACGCTGCGGACCCATAAAACGCGGACGCACGACGCTTACAAAAAGGATTTGCAGTTCAAATGTGAGTTTTGTGAACTCGCTTACGAGAAAGAGCCGAGTCTGAAAGTACATATGAAAAGGAAACATGGCAAAAACGCTACGCCGGAAGACAAAGTTGAGAGGATCTGCGAAATGTGCTCGCTCGCTTTCGTCGGTATGGCCAGATTGAAGATGCACATGCAGCGCAGACACGGATTGGCCATAGAGAATTTTGACCACAAATGTCCATACTGTGGCCTTACTTACGAGAAACAGACCAGCTTAGTGGTCCACATGCAGCGGAAGCACACGAACAAGGAGCAAGTGAGACAGATATACAACTGCCCGTTCTGTCCCAAATTGTTCACAGTGAGACAATCGCTAATGACGCACGTTAGGCGCAAACATCACGTGACGTATCAGAACTCTCTAGAATCCAGCTTCGAAGCTAACATGAATGAGTATGGCGACTATATTTGCAGTCAATGCCCGCTCGCATTTGCCACCGGCGCAATGCTTAAAATACATCTTCAGCGCACTCACAACGCGTGCAACGACATCTTCAAGTTGCGCTGCACGTACTGCCAACTCAGCTACGACAAAGTCTCCAGTCTAAAGCGCCACATCAAAAGGAAACACGATAAAACCTCCTACTGCGTCACGTGCCAGAAACAATTCGACACCCACGAACAATACCTCGGCCACGAGCATCATAAGCAAGTCCACGAGTGCGATGATTGCGGCATGCTCTTTAATTCCCAGCGGAGTTATTCCACGCATTACGGCAAGATGCACGCCCCGGTAACGCATCAAACTATATACTGTGACCGATGCCCGGCCACGTTCACACTTAAGAAGCATCTTAAATCTCACGTCAGAAACATACACTCGGACTATACGTACACGTGTGGAAAGTGCGGGAAGCAGTTTAAAGTTAAAGACAGTTTGAGACAACACGTTGTGAGGAAACATCCGCATGCTGAGAACAAAGTAGAACGGCCGTGTCCGCATTGCGACCGGACTTTTACTAATGAAAGAGAGCTTTGCGGCCATGTTGATAATGATCATACCAAGGAAGGTATAAAAACCGAAGAAGCAGACAGAGATATAGACATTAAAAGCATTTACCAGTGCCGCAAGTGCTCTGAGAGTTTTCTAACCTTCGATTTGCTAAAATCGCACAACAATTTGCTACACTGCAAAATATTGGGTAGCACGACGGGCGCGCAATGTCGCATTTGCTCTATAATTTTACCTGTTGAAATGATGCCTCAACACGTGAAAGTCACTCATGAGGAAGGGCTCAAGTGTAACTTTTGCGATTTTGAAGCGACCGAACGCGTCACACTTACCAAACACCTTTTACGACATAAAGACGTAACTCCCTTCAAATGCGACGACCTCGATTGTTCCTATAGCACTTACAATATCGCGGTGCTAAAGAAGCATAAGTTAAAACATTCTAACGATGTAATAAAGTACCAATGCTCTAAATGCCCCTTTCAAAGTATCAATAAGTATACTTTAAAGTATCACGAGAAAGAGCATTTTGTTGGAAAGAAGCATTATAGTTGTGATAAGTGCGATTATACGACTATAAACCAGGCTAATTTAGTCCAGCACAGGAATAAACATATGACAGAGAAGAAGTTTAAATGCGACGTTTGTTCGTTCGCAACCAAATACAACACATCGTTACGCTTCCATATAATAAAGAAACATCGCGATCTACCTATCACAAAcagttag
- Protein Sequence
- MTSLLTNQDDRLDLSHQPADDKRVEVKKKKKKKKRKNMEDPFKDIKESNFATTIIVEDEKTFDTSAIVKVEDIEVSVDCNEFLQSEMLIDSSQDDSTMEMDQNNSDQNAARRPSFESDTYPSNEENNFIPLEVSPTYICDECNLVFSNATTLRTHKTRTHDAYKKDLQFKCEFCELAYEKEPSLKVHMKRKHGKNATPEDKVERICEMCSLAFVGMARLKMHMQRRHGLAIENFDHKCPYCGLTYEKQTSLVVHMQRKHTNKEQVRQIYNCPFCPKLFTVRQSLMTHVRRKHHVTYQNSLESSFEANMNEYGDYICSQCPLAFATGAMLKIHLQRTHNACNDIFKLRCTYCQLSYDKVSSLKRHIKRKHDKTSYCVTCQKQFDTHEQYLGHEHHKQVHECDDCGMLFNSQRSYSTHYGKMHAPVTHQTIYCDRCPATFTLKKHLKSHVRNIHSDYTYTCGKCGKQFKVKDSLRQHVVRKHPHAENKVERPCPHCDRTFTNERELCGHVDNDHTKEGIKTEEADRDIDIKSIYQCRKCSESFLTFDLLKSHNNLLHCKILGSTTGAQCRICSIILPVEMMPQHVKVTHEEGLKCNFCDFEATERVTLTKHLLRHKDVTPFKCDDLDCSYSTYNIAVLKKHKLKHSNDVIKYQCSKCPFQSINKYTLKYHEKEHFVGKKHYSCDKCDYTTINQANLVQHRNKHMTEKKFKCDVCSFATKYNTSLRFHIIKKHRDLPITNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -