Nkoe005155.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004632.1:13154796-13161670[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.027 1.8 9.7 2.5 1 23 196 218 196 218 0.98 2 31 0.0051 0.36 11.9 1.0 3 20 253 270 251 272 0.93 3 31 0.00021 0.014 16.3 0.0 2 23 296 318 295 318 0.96 4 31 0.28 20 6.5 3.5 2 23 376 398 375 398 0.94 5 31 0.0004 0.028 15.4 1.5 1 23 435 457 435 457 0.96 6 31 2.5e-06 0.00018 22.4 2.3 2 23 496 517 495 517 0.97 7 31 0.0074 0.51 11.5 3.8 2 23 550 572 550 572 0.97 8 31 0.046 3.2 9.0 2.1 1 23 622 645 622 645 0.98 9 31 0.00073 0.051 14.6 0.2 1 23 696 718 696 718 0.98 10 31 0.018 1.2 10.3 4.7 1 23 729 751 729 751 0.97 11 31 0.32 22 6.3 3.0 2 23 763 784 762 784 0.96 12 31 0.0041 0.28 12.3 0.9 1 23 794 816 794 816 0.97 13 31 0.0076 0.53 11.4 4.8 2 23 835 856 834 856 0.96 14 31 0.0079 0.55 11.4 1.2 1 23 867 889 867 889 0.98 15 31 1.6e-05 0.0011 19.8 1.2 1 23 897 919 897 919 0.98 16 31 0.0034 0.24 12.5 0.1 2 23 939 961 938 961 0.95 17 31 0.057 3.9 8.7 5.1 1 23 979 1001 979 1001 0.95 18 31 0.063 4.4 8.5 3.5 1 23 1008 1030 1008 1030 0.97 19 31 0.0018 0.13 13.4 2.9 2 23 1041 1063 1040 1063 0.95 20 31 0.00062 0.043 14.8 0.2 2 23 1085 1106 1084 1106 0.95 21 31 0.22 15 6.8 0.5 2 20 1110 1128 1109 1129 0.92 22 31 7.6 5.3e+02 2.0 4.0 2 23 1149 1171 1148 1171 0.94 23 31 0.58 40 5.5 0.1 2 23 1187 1208 1186 1208 0.94 24 31 0.073 5.1 8.3 4.9 3 23 1216 1236 1214 1236 0.96 25 31 0.0039 0.27 12.3 1.5 1 23 1246 1269 1246 1269 0.96 26 31 0.19 13 7.0 7.0 2 23 1286 1304 1286 1304 0.97 27 31 3.4 2.4e+02 3.1 1.1 2 22 1308 1328 1308 1328 0.93 28 31 0.32 22 6.3 0.8 2 23 1349 1370 1349 1370 0.95 29 31 2.1 1.4e+02 3.7 0.4 2 23 1377 1398 1376 1398 0.93 30 31 0.036 2.5 9.3 0.1 2 23 1409 1431 1408 1431 0.94 31 31 6.2 4.3e+02 2.3 3.3 1 19 1468 1486 1468 1488 0.93
Sequence Information
- Coding Sequence
- ATGGCGCTCAAGCTAGGGAAATGCCGGTTATGCCTCAAATTAGGAGATTTCTACTCCATATTCGCTACGGACAACACCGTTCAACTGGCAGAAATGGTGATGGACTGCACTCGAGTGAAGATTTTTGAAAATGATGGCTTACCTGAGAAAATTTGCACAGAATGTGTTGAGAAATTAAGTAGTTCCTATTTATTCAAACAGCAAGTTGAACGTTCAGATGTGGAACTACGCAGGAACTTTGTGCCTCCACCAGGTGTAAAAATCACTCCGCCATCTAATAGAGAGAGTAATGACTCTGGTATCTCAAATAGAACAGAATATGGAGCTAAAGCGCCCTCTATCGCTGATGAGAAACCTACTAGCTCTGGGAAACCCTTTAAAAGAAGCAGAAATAGTGATAGTAATTTCAGTAATGAACTTAGAAAAAATCACCTTCAAGAAGCATCCAGTTCTAAAATTGATTATATCAAAAGTGAAAAACGGAGAAAACCTGATTTGGATGATGATTCCACTCAACAATCAGATTATGAAGACAATGGCAATTCTCAGTTCTCTGGCGAGACTGATTCAGATGATATCCTCATACATAAATGTCAACAATGTGAAAAACAATTTCTATCAAAGAGGAGTTTGGCCCTCCATGTTCGCATCCACTCAAAGATCAGCAACAACACAACTGAACAAACCCCACCATCCAGTCCACCCACTGCTGCTCCTGAATCTACCACAGACAATGACACTGAGGACGCAACACATTGTGAATTGTGTAATAAATCTTTTAAACTAAAGATTATGCTGAAACGACACTATGACGTCTGTCCAAAAAGAATCCCGAAAAAGGAGCTCAAGATTACATTAGAAAAAGTTTCTTTGGATGAGAAAATTGAATGTGAAATATGTGGGGCGCAGTTCAAAGCTATCGGCAACTTGGAGAAGCATATGAGAGTAGTACATGCCGCCGTCCTCAAGATGCGCACGTCTGAAGTCGCAGCAGACAGCGCACCAGAAAGCGTGCAGCAGCCCACACCTGTCCCCTGCGTGTTCTGTCACAAGACCTTTGATAACTTTTACACTCACAGTACTCACTTCAACACCTGCCCCGTCCGGTCCAACGTACAAACCATCTCGTGCTTGGTCTGCCGCAGGAAGTTTGAACACAAGAACACTTACTTCACTCACCTCAAGGAGACTCATCTGGCACACACACCCAAGCCCAGCACACCCAGGCCAAACACACCGAAGCTTAGCACACCCAAGGTCAACACACCCAAGCCCAACCTTTCTAAAAAATCTCAAGAGACGTACGACTGTCGCATTTGCAATAAGAAATTCAATAATCAAGAGCTTCTAGTTTCACACCTCGCGCACCACGTATCTTACGAAGACGATATGGACTCGATGGACGCAGACAACTCTAGAACCAGCCCGCTAGACGATACCTCGTTTCAAGTGGAGAGGAGCTCGTCCAACACGCCGAACAATTTAAAATGTCAATACTGTGACAAAGTGTTCACATACAAGAAGTCGTTACAGAAACATATTGACAAACACATGTCGGGAGATATCCCCATGACGACGGAAGACGATCAAGCTCCGGACAGTCCCGCGCCCACCGAAGACGAGTCTAGTCAGGACGACGACGACAACACTTGCGACATCTGCGAGAAGCAGTTCTCGTACAAGCGCGTCTTACTGCACCACAAACGGACCAAACACAACATCAGCTCGGGCACTAAGCGCGCCAATTTCGCACTCAAGGACTGCCTTGTCACCTGTCTCATTTGTGACATTAGCATGAAGGTGGCCGACTCCAACGCCCACAACCAGCAGCACCACGCGGCCGGCATCAAGCCGCGCAACAAGTACACCTGCATGCAGTGCGAGGACACCTTCAAGAGCTGCCAGGCTCTCAGCACCCATATCAAAATGGTCCACCGGCTCAACCTCCAGGTGACCAAGAAGATGGTAGTGTCGGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGACGGAACCTCTGGACAGCCTCCAGAGTCACAACGAGAGCGGCGAGCAGGTTccgctggcagagggcgacgcCGAGTACACGTGCCCCGTGTGTAGCAAGAAGATGCCCACGCTCGCCTCGCTCAAGAGGCATGTGCGCTGGCACACTAACGTCGGGAACAACATAGAGGCCAAGTACGACTGCTTCGTCTGCAAAATGGAATTCAAGTTCAAGGGCCACTACAAACAGCACATGAGCCAGCACTACAAAGACACGACATTGGACCCCAAGTTCCTCACGTGCACCATCTGCAACCGTAAGAGCAAGCATCTGCGGGCGGCACAGATGCACATGAAGTTCCATGACCAGACCAGGTTTAACACCAAGGACTATGAGTGCTCTATCTGTAAGAGGGTGTTCCAGCAGAGGAAGGTATACCTGTCTCACATGGCCAACCATCAGAAGCGCGGCGAGGCGCTGCCGACCGGCCTGATCGCAGTCACGCAGGAGAACCAGTGTCCGCACTGCGGCAAGGTGTGCGACTCTGCGAGCTCGCTCAAGTGTCACATGACTTGGCACAAGTCCAAATCGTCTCTGTACGGCGCGCGCTACGAGTGCGGATTCTGTGAGCAAGTGTTCACCAACAAAAAGACGCGCGATCTACATGTGCGGACTCATTACGAGGACGACGACGGGGCCTACAAGTGTTCAGTCTGCAACAAGGGATTCACAGACGAGGACTACTTCCGCCGACACGTCAAGGGACACAACTTCGACCACCAGTCGCACCGCAATCGTATCGAGAAGTTGCGGGTCGGCAAGGTCAAGTGTCCTATCTGTCCGCGTTACTACCCCGACATGGGCAAGCTGGTGAGACATTTGCGCTTCTCGCATCCCGAGTCCAAGATGGTGAAGCGGGACCCGGACGCCCCGCCACTTGCTCTGCATCACTGCACTACCTGCGCCAAGACATTTACGGACGAGCGACGTCTGCGCCGGCACGAGGAGTCACACACCCGCAGTCACCACTTCTACAAGTGCAAGTTCTGTGGCAAGAAGACCGTGTCGCTCAAGAATCACAGAGTGCACATAAAGGGACACCTGACGCAGAAGTTCACGGACGAGCCTCTGCGCTGTCCGCACTGTCCGCAGAGCTTTGTGCGCGGGTACGGTCTACATCATCACCTGCGGGACGAGCACGGCATTACCGAGACGTGGGAGGAGAGCGGCACGCCCGCCGCGCCCGGACCGCCTGTCGCGCTGCAGTGTACCGTATGCGACAAGGTGCTCGCCTCGCGTGGGAACTACGAGCGACATCTCGACTACCACAACGGGCTGCGCTGCAACTACTGCTTCCGCTACTTTAGCTCGCTCAAGTTCCTCGAGGGCCATCTCGCCTTCGCGTGTGACAAGCGGCGCTTGCTCGGCGACACCGAGGTGCACCCACGCCGCGTCAAGTGTCCGACTTGCTACAAGCCATTCCACCTGCAGGTCAAGCTGGACTGCCATTTGCGGACCCGGCACGGCGTCGCAGTCGAGCGCGAGGCGAGCGACAAGGAGGCCCGGATCGTGTGCGACTTCTGCTTCCGCGAGTTCGCTAACGAGGAGGCGCTCGGCCTGCACAAGCTGTACCACCGCTCTGTGGGTTATTACGGTTGTCGGTACTGTCCCCGCAAGTTCAACAACCTCACCACCTACAAGAAACACAAGAACCACCACTTCGCCCAGCTCAACACGGAAGAGCCCTTCAAGTGTTCGCACTGCGACGAGCGGTTCGTGCCGTTCCGAGAGATGATCTACCACATGCGAGACGTGCACGGGGACGACACGGAGTGGCTCGTGATGCCGAAGAAGGTCGTCGAGGAGCGCTGTCACATATGTCACAAGAACTTCTACAACCTGCAGCGACATCTGCGGTTGCACGAAGACAATCGCTGTCGCAAGTGTGGCGAATACTTCCTGTCGCGTTCCGCCTTCGACGCGCATCTCTGCACCATCGACAGCGACACGGAGCCCGCTCCCGAGGACGCGACCGATCTGCGGCCACGCTACGAGGAGTGCGGCTTCTGTTTCAAGCCCTACACGAGAGTCAGCACGCGCCGCAAGCACGAGCTGATCCACAGAGGGTCAGGCGCCATCTCGTGCCGCTTCTGCGCGCTCAAGTTCAAGACAATAGACGCGTTCAACGTACACGCGTTCTCGCATCGCAGCCGCAAGTATCGCCGCGAACCGCTGCGGTGCCGCGTGTGCGGGGAGCAGTTTGTCCAGTACGGACCGTTCGTGAAGCATCTGAAGGGCGCGCACGGCATCCACGAGAAGATGCACTACCGCAGTATAGTGCGGCCCGAGCCATGTGTAGTGTGCGGGGAAGAACTGCCTAACCTCCACAACCACTACCGTGCACACCTGCAGCACCGCTGCGCCGCCTGCCGCAAGTACTTTACGTCGCAGCGTCTGTTCCTCGCGCACAGCTGCGACAGTCCGGACGACGAGCCACACAAGGTGTTCACGTGCGAGGCCGACCTGCAGGCGCTCATCAACTCGTACTTACCTAAGGACTTGGACGACCAACAGAAGTACTACGGCCAGCCCGCGCCCGCTATGACACAACAACATATAGAATACGACGAAAACACGCTCGGTCCCATCTCCATACAGTCCCCCATCATCTCTGACGTGCTCTCCCTCTATCAGGAACAGCAGAACTCCGCGGAACACCAAATAGAAATTGACGACTCGCCGCACGAGGAAACCAACGATTCGCAACCGTCGTACCACAAGAATGGTGATATCaaagttgatgatgatgataatgatgatgataatgtAGTGGAGATTAGAGATGACAACTCTGATGACGATATCTGCACCATCACTATTGATGATTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFATDNTVQLAEMVMDCTRVKIFENDGLPEKICTECVEKLSSSYLFKQQVERSDVELRRNFVPPPGVKITPPSNRESNDSGISNRTEYGAKAPSIADEKPTSSGKPFKRSRNSDSNFSNELRKNHLQEASSSKIDYIKSEKRRKPDLDDDSTQQSDYEDNGNSQFSGETDSDDILIHKCQQCEKQFLSKRSLALHVRIHSKISNNTTEQTPPSSPPTAAPESTTDNDTEDATHCELCNKSFKLKIMLKRHYDVCPKRIPKKELKITLEKVSLDEKIECEICGAQFKAIGNLEKHMRVVHAAVLKMRTSEVAADSAPESVQQPTPVPCVFCHKTFDNFYTHSTHFNTCPVRSNVQTISCLVCRRKFEHKNTYFTHLKETHLAHTPKPSTPRPNTPKLSTPKVNTPKPNLSKKSQETYDCRICNKKFNNQELLVSHLAHHVSYEDDMDSMDADNSRTSPLDDTSFQVERSSSNTPNNLKCQYCDKVFTYKKSLQKHIDKHMSGDIPMTTEDDQAPDSPAPTEDESSQDDDDNTCDICEKQFSYKRVLLHHKRTKHNISSGTKRANFALKDCLVTCLICDISMKVADSNAHNQQHHAAGIKPRNKYTCMQCEDTFKSCQALSTHIKMVHRLNLQVTKKMVVSDLADFCEVVVTKTEPLDSLQSHNESGEQVPLAEGDAEYTCPVCSKKMPTLASLKRHVRWHTNVGNNIEAKYDCFVCKMEFKFKGHYKQHMSQHYKDTTLDPKFLTCTICNRKSKHLRAAQMHMKFHDQTRFNTKDYECSICKRVFQQRKVYLSHMANHQKRGEALPTGLIAVTQENQCPHCGKVCDSASSLKCHMTWHKSKSSLYGARYECGFCEQVFTNKKTRDLHVRTHYEDDDGAYKCSVCNKGFTDEDYFRRHVKGHNFDHQSHRNRIEKLRVGKVKCPICPRYYPDMGKLVRHLRFSHPESKMVKRDPDAPPLALHHCTTCAKTFTDERRLRRHEESHTRSHHFYKCKFCGKKTVSLKNHRVHIKGHLTQKFTDEPLRCPHCPQSFVRGYGLHHHLRDEHGITETWEESGTPAAPGPPVALQCTVCDKVLASRGNYERHLDYHNGLRCNYCFRYFSSLKFLEGHLAFACDKRRLLGDTEVHPRRVKCPTCYKPFHLQVKLDCHLRTRHGVAVEREASDKEARIVCDFCFREFANEEALGLHKLYHRSVGYYGCRYCPRKFNNLTTYKKHKNHHFAQLNTEEPFKCSHCDERFVPFREMIYHMRDVHGDDTEWLVMPKKVVEERCHICHKNFYNLQRHLRLHEDNRCRKCGEYFLSRSAFDAHLCTIDSDTEPAPEDATDLRPRYEECGFCFKPYTRVSTRRKHELIHRGSGAISCRFCALKFKTIDAFNVHAFSHRSRKYRREPLRCRVCGEQFVQYGPFVKHLKGAHGIHEKMHYRSIVRPEPCVVCGEELPNLHNHYRAHLQHRCAACRKYFTSQRLFLAHSCDSPDDEPHKVFTCEADLQALINSYLPKDLDDQQKYYGQPAPAMTQQHIEYDENTLGPISIQSPIISDVLSLYQEQQNSAEHQIEIDDSPHEETNDSQPSYHKNGDIKVDDDDNDDDNVVEIRDDNSDDDICTITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -