Nkoe021723.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004655.1:6062386-6067356[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.022 1.5 10.0 1.8 2 23 53 75 52 76 0.93 2 25 0.73 51 5.2 0.2 2 23 101 123 100 123 0.95 3 25 0.036 2.5 9.3 2.8 1 21 230 250 230 251 0.96 4 25 0.047 3.2 8.9 0.1 3 23 280 300 279 300 0.95 5 25 2.1e-05 0.0014 19.5 1.3 1 23 348 370 348 370 0.98 6 25 0.065 4.5 8.5 1.2 1 23 375 398 375 398 0.88 7 25 0.014 1 10.5 0.6 1 23 404 427 404 427 0.94 8 25 0.00032 0.022 15.7 1.4 1 23 434 457 434 457 0.98 9 25 0.051 3.5 8.8 4.0 1 21 469 489 469 491 0.94 10 25 0.1 7.1 7.9 2.9 1 23 581 604 581 604 0.92 11 25 0.38 26 6.1 0.1 2 23 631 653 630 653 0.94 12 25 2.5e-05 0.0017 19.2 1.4 1 23 676 698 676 698 0.98 13 25 0.001 0.072 14.1 0.1 1 23 702 724 702 724 0.98 14 25 0.018 1.3 10.2 0.1 1 23 729 752 729 752 0.94 15 25 1.2 85 4.5 3.0 1 23 758 781 758 781 0.90 16 25 0.05 3.4 8.8 1.4 1 23 788 811 788 811 0.95 17 25 7.2 5e+02 2.0 4.1 1 23 883 905 883 905 0.82 18 25 0.0052 0.36 11.9 0.8 1 23 974 996 974 996 0.98 19 25 0.00076 0.052 14.6 1.5 1 23 1000 1022 1000 1022 0.97 20 25 0.024 1.7 9.8 0.2 1 22 1027 1048 1027 1050 0.82 21 25 0.019 1.3 10.2 1.5 1 23 1056 1079 1056 1079 0.93 22 25 0.021 1.5 10.0 0.6 1 23 1085 1108 1085 1108 0.96 23 25 0.0059 0.41 11.8 3.0 1 23 1114 1136 1114 1136 0.95 24 25 2.3e-05 0.0016 19.3 1.0 1 23 1142 1164 1142 1164 0.99 25 25 0.0002 0.014 16.4 4.9 1 23 1170 1192 1170 1193 0.94
Sequence Information
- Coding Sequence
- ATGTCTTTCGTCACAGACCTCGCTTTAAGACTTCACGTCAAAAAGTGTCAATCGAGCGAAGTTCGATTCATATATCAGTTGAAACATAGAAATAATGCCGAAATTATAATGGACAATTCCACGGCGTACCCTTTTAGGATTTGGGCCGGGAAACTAAGCTGCGTTTTCTGTCGGAACGTCTTCGTAAATCCTTCTTTATTACGCCACCATCTGGACTCGGAACATCATCAGGTTGATACCAAAGCCGCCTTCTATAAGTGCTTGCGTAAAGATTACCTGAAAATCGATATAACTGAtcttaaatgtaaaatatgtgCAGAGCCTTCTGATAATATCGAAACACTAGCGCAGCATCTGAAACACGGCCACAATAAAATGTTAGATTTAGATGCCCAAATGGGCGTGTTGCCATTCAAATTAGATTCATCACTTTGGAAGTGTCTGTTTTGTATGAATCAATTTTCCGACTGCCTATCGTTGgtcaaacaaaaaaattacagagagtACACAAGACATTTTCTGTTTTTAGGGAAAAGAAGTCTCTGCAAAACGAAACGTAACATTGTAGAAACGAATAAGTACTATAAACGGAGCGACAAATCACAAGCCTGCATCAACACAAAGAAGAATGCCAACTCCATAATCGATTGttggtctgtctgtccgtttagGTGGcagaaaaataaattcaaatgcGCTTATTGTGATGCGGATTTTACGGAATGCCACGAATTGAGAGACCACGTTAGGCATTGCTCCACACAACATACCATTCAAGATATTTACAGCAAGTATAGGGAATTGCCAATGATCAATATTGACGTTACTAATGCTATGTGCAGAACTTGTGGCATATTACTTTCGAATCCTGCTGATTTGAAGCGTCATGCAATATCGCACGATTTCCCTGTAATACAGGGACATCCAGATGGCGTTATCCCTTTTTTATTAGACAAAAACAGCTGGAGTTGCATTTCTTGCAGCgaaaaattcaataattttctGAAACTGTACGAGCACATGAATTTCCATTATCAACATTACATTTGCTCGAAATGCGGGAAAGGTTTCATGACTGCGTATCGCTTGAGGAAACACATGACTTCCCACATCTATGGCTCGTTCCCTTGCGACTCGTGCGATCGGGTGTTTTGCAATCAAGCAGCTCGAGAGTATCACAAAGCAAACTCTCACCCTAAAGGGCCGAGATATGAATGCCCCAAGTGCCAACTGCGCTTCGATAAGTATTACGAGAGGATGCGACATCTGATTGAGGTTCATAGAGAAAAGGAAGTGACTTACCGTTGCGTCCATTGCGATTTGGGATTTAAGACTAGCAGTAAGCGGGCAGCCCATATGAAATCTGCTCATTTATACATAGCGCGATTATCGCCACTGGCTACGCATTCCTGTCCACGATGCGGAGTTACGTTTGAATCTACATATTTGctaaaatatcatttaaaatgtcACCCGGAAGATGATTCTTGCCCTATCGTAGCTAAGGATCTTCATAAGTACGTTTTCATTTTAGGTTCCGCCATAGTCGACGCCAACGTAACTCGTGTTATTAAGATGAAAGAGAATGTCTCTGCTCGAACACTGCTCCGTAGAAGACGAGCTAATAACGAATTACCTGAAGAATCTGCGAAACGTATAGCTAAAACAATGATGAGAAGAAACGCCATGATTTTAATGGAAAATTCAACTGCTTGGGCGTTCCGATGGTGCAAAAACGCATTTTTTTGTTCATATTGCGAtggaaaattttatgaaaataaaactcTACAACACCACGTTGTGTCTAACCATTTGCAGGAACAACCGACCGTGTCAATATTTTCCAAAATTACTGAGAATAACATGCTCAAAATCGAAATAGGAACTATGAAGTGTCGTTTGTGTAATATATACCTGGAATCTATAGATAATTTAAAGACGCATATCATTCAGGCACATGACAAGTGCTTTCACATTGGCTACAGCGATGGTGTTCTACCATTTAAGTTCAAATCGGAAAATGTATACGATTGTCAAATGTGCAAGGAGTCATTCAATAGCTTCACAAACCTGAACCAACACATGAATATACATTATCAGAATTATATATGTGATGCATGTGGGAAGGCGTTTATATCAAAACCAAGGTTTCGGATACATGTCCAGACCCATGAGATCGGTAGTTTTGCGTGTAGAGATTGCGGCGAGGTCTTTGATACGCGCGTCGCTCGAGTCACGCACAGAATTAAAGTGCATCGCAGAAAAGTCCGCTACACATGCCCTAAATGTTGCCAACCTTTCACTACGTATTACTCCCGATCGAAACATTTAGTTGAAGAGCATAATGAAAAGTCTAAGGAATATAGCTGCAGTTTTTGCAGCAAAATATTTGCTACGAGCTGCAAGCGCGCTGCACATGTGCGCGCGGTACACAAATATACATCAAAAAGGCATTCGCGGCCGTTTGTCGAATTTTGCCACCCTCCCATACCAATAGATGGGATCACTGTGGACAAATCGCGAACGGACTCCAAAACAGTTGAAGTTAGTTGGAAAAAGAAACGTACTTTCAATGATCAGCGAGACAACGCTTTTGTTATTATAGAATGTTCGAATGTAGTCCCATTTAGATGGTCTAGTGGCAAATTTCACTGTTCCTAttgtaaaactatttttaaacatGTCAATGAAATCAGACCGCATACTAAAGATCATCCTAATAGACTCGAAATTTTCGATAAATTGCGCTCATCAATTGATTGTATCAAAATCGAAGTATCGCATTTAGAATGTGAAATTTGCTCAAAAAGTATGATTTGTATAGAATCTCTTAAGAAACATCTCATAGATGAACATAATAAACGTTTGGACAGCGATAACGGCGATGGTGTTATACCATTTTCGTTTGCTGATGACACTTTTAAATGTGTAGAGTGTGGTGAaaagtttcttttattttttaatcttaaCAGGCATATGAACGGCCACTATCAGAGACACGTCTGCGACAACTGTGGCAAGGCATTTGCTGCATTGCACAGGCTCAAGTCTCATATACAATCTCATGAAGTTGGAGCTTATCCATGTCCTAAATGCGGTGTAATTTTTCGCAGTCGCAATTTGAGATATAGCCACGTTGCTCAAATACATGGTCAGGGATCCAGATATGCCTGCCCCCATTGTGACGGAAAATTCACCACCTATGGCCTCCGCAATAGACATTTGACTGAAAAACATGGTCAAATTTCCGAGTATCCATGTTCAATATGCCCAGCGGTTTTCAGATTGTGTAACGCTCGAACTAAGCACATAAAAAACGTGCATATTAAAAAGAAGGTGCATGATTGCAATGTATGTGATGACCAGTTTGTTACATCGCATCAACTCAAAAGCCACATGGTTCGGCATACAGGTGAAAGAAAATATCAATGTACCGTATGTAAACGAGCATATGCTAGGCCTAATACGTTAAAAGAGCATACAAAAACACACACAGATGATAGAAGACACATATGTGTCGTTTGCGGCCAGACTTTTATACAGAATTGCAGTTTGAAGCAACACATGAAAGTTCATCACGCAGATCACGCTGCACAAATTTGA
- Protein Sequence
- MSFVTDLALRLHVKKCQSSEVRFIYQLKHRNNAEIIMDNSTAYPFRIWAGKLSCVFCRNVFVNPSLLRHHLDSEHHQVDTKAAFYKCLRKDYLKIDITDLKCKICAEPSDNIETLAQHLKHGHNKMLDLDAQMGVLPFKLDSSLWKCLFCMNQFSDCLSLVKQKNYREYTRHFLFLGKRSLCKTKRNIVETNKYYKRSDKSQACINTKKNANSIIDCWSVCPFRWQKNKFKCAYCDADFTECHELRDHVRHCSTQHTIQDIYSKYRELPMINIDVTNAMCRTCGILLSNPADLKRHAISHDFPVIQGHPDGVIPFLLDKNSWSCISCSEKFNNFLKLYEHMNFHYQHYICSKCGKGFMTAYRLRKHMTSHIYGSFPCDSCDRVFCNQAAREYHKANSHPKGPRYECPKCQLRFDKYYERMRHLIEVHREKEVTYRCVHCDLGFKTSSKRAAHMKSAHLYIARLSPLATHSCPRCGVTFESTYLLKYHLKCHPEDDSCPIVAKDLHKYVFILGSAIVDANVTRVIKMKENVSARTLLRRRRANNELPEESAKRIAKTMMRRNAMILMENSTAWAFRWCKNAFFCSYCDGKFYENKTLQHHVVSNHLQEQPTVSIFSKITENNMLKIEIGTMKCRLCNIYLESIDNLKTHIIQAHDKCFHIGYSDGVLPFKFKSENVYDCQMCKESFNSFTNLNQHMNIHYQNYICDACGKAFISKPRFRIHVQTHEIGSFACRDCGEVFDTRVARVTHRIKVHRRKVRYTCPKCCQPFTTYYSRSKHLVEEHNEKSKEYSCSFCSKIFATSCKRAAHVRAVHKYTSKRHSRPFVEFCHPPIPIDGITVDKSRTDSKTVEVSWKKKRTFNDQRDNAFVIIECSNVVPFRWSSGKFHCSYCKTIFKHVNEIRPHTKDHPNRLEIFDKLRSSIDCIKIEVSHLECEICSKSMICIESLKKHLIDEHNKRLDSDNGDGVIPFSFADDTFKCVECGEKFLLFFNLNRHMNGHYQRHVCDNCGKAFAALHRLKSHIQSHEVGAYPCPKCGVIFRSRNLRYSHVAQIHGQGSRYACPHCDGKFTTYGLRNRHLTEKHGQISEYPCSICPAVFRLCNARTKHIKNVHIKKKVHDCNVCDDQFVTSHQLKSHMVRHTGERKYQCTVCKRAYARPNTLKEHTKTHTDDRRHICVVCGQTFIQNCSLKQHMKVHHADHAAQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -