Nkoe021724.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_963924495.1
- Location
- OZ004655.1:6075695-6079867[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0053 0.37 11.9 2.0 1 23 5 28 5 28 0.92 2 18 3.4 2.4e+02 3.1 0.4 1 23 56 78 56 78 0.94 3 18 0.0082 0.57 11.3 0.2 1 23 100 122 100 122 0.97 4 18 0.26 18 6.6 1.2 1 23 126 148 126 148 0.96 5 18 0.19 13 7.0 0.1 1 23 153 176 153 176 0.92 6 18 0.0012 0.084 13.9 4.4 1 23 182 205 182 205 0.96 7 18 0.035 2.4 9.3 0.6 1 23 212 235 212 235 0.93 8 18 1.3e-05 0.00093 20.1 0.9 1 23 241 263 241 263 0.98 9 18 1.9 1.3e+02 3.9 0.2 1 20 546 565 546 569 0.83 10 18 8.7 6e+02 1.8 2.5 3 23 596 617 594 617 0.90 11 18 0.0092 0.64 11.2 0.3 1 23 639 661 639 661 0.98 12 18 4.7e-05 0.0032 18.4 0.2 1 23 665 687 665 687 0.99 13 18 2.1e-05 0.0015 19.4 0.3 1 23 692 715 692 715 0.96 14 18 6e-05 0.0042 18.0 0.5 2 23 722 744 722 744 0.97 15 18 0.00078 0.054 14.5 1.7 1 23 751 774 751 774 0.98 16 18 0.00085 0.059 14.4 2.6 1 23 780 802 780 802 0.96 17 18 3.8e-07 2.7e-05 24.9 1.0 1 23 808 830 808 830 0.99 18 18 0.00057 0.04 14.9 0.2 3 23 837 858 835 858 0.97
Sequence Information
- Coding Sequence
- atgaaaaatctatatttttgtttttattgtgaGCAAAACTTTTCTGATCCTAAATATCTAAGAGATCACAATTCGAGTAATCATAATCAAGTATCGAACCAACAAATCAAAAATGCCATGAAACGAGTTAAAAAATTTGAACTTGTAAAAGTCGACATAAACGACTTCTCTTGCAAGTTCTGTCCAGACATTTTAGCTGATTTTAAGAGTTTTAAAATACATCTACTCGAACATAAAACTGATTTCAATAATAAATTTGGTGACGGTGTTCTACCGTTTAAACTAGCTAAAGAAAACTTTGACTGTGTGATGTGCGAAGAGTTATATACAGATTTTAAAGCTTTGAACCAACACATGAATGTACATTTCCAGAATTTTATTTGTGAACAATGCGGTTCTGGATTCATGACTCCAGATAGACTTCGATGTCACACGCTAACACACGGCACCGGATCTTACAATTGCGAAGCTTGTGATAAAGTATATCGTACTGTGAATGCTAAAAATGAGCACTATGCAATGATCCATAGGCAAGTGAAGAGACACCGATGTCCACATTGCCCTGAAACATTCAAAAACTATTTTCAACGGACAAAACATATAACAGTTGACCACGGTTTGAAAACCAAAGAATTCAAGTGCAATTTTTGTCCAAAAGTATTTTTGGGTAGCGGGAAATTGGGACACCACGTCCGGGCGGTTCACTTAAAGCTCAAAAATTACTCGTGTAACGTTTGCGAATGGAAATTTTACTCTAAAACAGAGTTGAAAGAACACATGATTAGACACGGTGGAAATGTGTCGAGTTCACCAACACCTACAATTAAAGGAACGAAAAGCAGAATAACGCCGTTATTCCAAGTGGCATACGACAGGACATTGTGTCGACCTCTTGGCACTCTGGTGGACTTCGATAAAACCTCTCAAAGATATCGCGATAttcaatacaaattaaaatcaaagaGTACTACATCAGACCTCAGTATCTACTCGCCTTCACCGGATCTTCCCTCTATATCACCACCATCATCACCTAagttagaaatcgacgaaactGTTCCATCGGTGAATGTATCGGCTAACTTAATGAAAAAGGACTCCTTGCGGCAGTTACCCAATATTAGACAGAACGTTTTAACTGTATTTGAATTTTCAACTGTGTACCCTTTCATTTATGGACTCATCGAGGAAAGCAATGCCTCTATCATAATCAAAGATGAGGACGGATCCGACATCAAATTGGCATTACTGAAGAAACCCATCTCTTTGGACAACCTTAGCACGATTTATGAAGATATAAAGACATatcgtaaaaataaaaagagaagtaaattaaatattgcacCAGTTAAAAAGGAAGGGATTGTGAAAAAGGAGGAATCGAAATTATTAAATCTGACGATACTTAAAGAGCCACTTTCTCTAGATAATATAGAATGGGATGATGATCACACAATTACAGAGTTACCTAAGTGTAATTCAATAACGTTTAATGTGAAGACTGTTGCTGAAGCATATCACTGTGGCACTCGGCGCCGGAGGGCAAATGCGATAGAGTATCAGGTCTGGAAACAAAATGCGATTACCCTGTTCGAATTTTCTCACGTGTATCCATTTGTTTATGGTAGTAATTCATATAAATGCTTCATATGCTCGACCCCGTTTCTCGACGTAGGCCTCCTACGATACCATGCAGTTAATAGTCATACCATGGGGGAGATGAAACGTGAACTAAATAACAGAGGTAGGGATAAAAATCTAAAAGTGGACGTTAGCTCTTTAGATTGCAAACTTTGTACGTGCAGACCAATAACTTTACATAACTTAAAAATCCACCTTAAAGACATCCACGAAAAGCAAATTGATCCTAACTATCAAGACAATCTAGTGCCTTTCAAGTTAGGTGGGATCACTTTTGAATGTCAACTTTGCGACGAGAGTTTTCTAAAAATCAGATTGTTGATTATTCACATGAACAAACATTTTAACAACTACAGCTGTGAAATATGCGGTTCTGTTTACATATCATTGAACTTATTAAAAAGACACTTGCAGACTCATGAATCTGGCAACTTTCGATGCAGCGAATGCGACAAAGTGTTTAGTAACGCCACTAAAAGAGCGGTTCATATGCGCGGAGTTCATTTGAAACAGTACCCACGGCGTTGTCCCATTTGTCCTGAAAGATTTAATTCCAATTACCAACGAACTAAACATCTGAGAATAGTTCACAACCAAACCACGGGACTGTTTCGGTGCGAAACTTGCAGCAGAGAGTATGACTTAAAGTCGCATCTACTGCTCCACATTCGGTCGGTTCATTTGCAGGAAAGAAATCATGAATGTGCCCATTGTCAAGCAAGGTTTTTTTCTAAGGAGTTACTTAATAGACACATGGTAATACACACTGGAGAAAGGAACTTTAAATGTGAGATATGCGGTAAAGCATATGCTCGAAGGAAAAATCTAAGAGAGCATTCTAGAACTCATGAGGTTGGGCCATTTGGATGTTCAATTTGTGGACAAAGCTTTATAGATCATATTGCACTTGTATCACATATTAATTCTTTACATGGGGTCGTCTAA
- Protein Sequence
- MKNLYFCFYCEQNFSDPKYLRDHNSSNHNQVSNQQIKNAMKRVKKFELVKVDINDFSCKFCPDILADFKSFKIHLLEHKTDFNNKFGDGVLPFKLAKENFDCVMCEELYTDFKALNQHMNVHFQNFICEQCGSGFMTPDRLRCHTLTHGTGSYNCEACDKVYRTVNAKNEHYAMIHRQVKRHRCPHCPETFKNYFQRTKHITVDHGLKTKEFKCNFCPKVFLGSGKLGHHVRAVHLKLKNYSCNVCEWKFYSKTELKEHMIRHGGNVSSSPTPTIKGTKSRITPLFQVAYDRTLCRPLGTLVDFDKTSQRYRDIQYKLKSKSTTSDLSIYSPSPDLPSISPPSSPKLEIDETVPSVNVSANLMKKDSLRQLPNIRQNVLTVFEFSTVYPFIYGLIEESNASIIIKDEDGSDIKLALLKKPISLDNLSTIYEDIKTYRKNKKRSKLNIAPVKKEGIVKKEESKLLNLTILKEPLSLDNIEWDDDHTITELPKCNSITFNVKTVAEAYHCGTRRRRANAIEYQVWKQNAITLFEFSHVYPFVYGSNSYKCFICSTPFLDVGLLRYHAVNSHTMGEMKRELNNRGRDKNLKVDVSSLDCKLCTCRPITLHNLKIHLKDIHEKQIDPNYQDNLVPFKLGGITFECQLCDESFLKIRLLIIHMNKHFNNYSCEICGSVYISLNLLKRHLQTHESGNFRCSECDKVFSNATKRAVHMRGVHLKQYPRRCPICPERFNSNYQRTKHLRIVHNQTTGLFRCETCSREYDLKSHLLLHIRSVHLQERNHECAHCQARFFSKELLNRHMVIHTGERNFKCEICGKAYARRKNLREHSRTHEVGPFGCSICGQSFIDHIALVSHINSLHGVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -