Nkoe022673.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004656.1:6569818-6572025[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.1e-07 7.9e-06 26.6 2.4 1 23 7 30 7 30 0.97 2 20 0.00015 0.01 16.8 0.8 2 23 35 57 34 57 0.95 3 20 1.5e-05 0.001 19.9 0.7 2 23 66 88 66 88 0.96 4 20 0.00053 0.037 15.0 6.4 1 23 95 118 95 118 0.94 5 20 7.1e-06 0.00049 20.9 2.0 2 23 126 148 126 148 0.97 6 20 0.0003 0.02 15.9 2.0 2 23 156 178 155 178 0.95 7 20 0.077 5.3 8.2 7.3 1 23 184 207 184 207 0.96 8 20 0.00085 0.059 14.4 1.2 1 23 229 252 229 252 0.97 9 20 0.0017 0.12 13.5 2.3 1 23 284 307 284 307 0.96 10 20 0.0059 0.41 11.8 1.7 2 21 315 334 314 335 0.94 11 20 0.0008 0.056 14.5 1.2 1 23 343 366 343 366 0.95 12 20 0.16 11 7.3 4.6 1 23 387 410 387 410 0.95 13 20 0.00013 0.009 17.0 3.2 2 23 417 439 416 439 0.97 14 20 3.4e-05 0.0024 18.8 2.4 2 23 446 468 445 468 0.94 15 20 0.00048 0.033 15.2 1.5 1 23 474 497 474 497 0.98 16 20 0.17 12 7.2 5.0 2 23 505 527 505 527 0.95 17 20 0.0052 0.36 11.9 2.1 1 23 534 557 534 557 0.96 18 20 0.0053 0.37 11.9 0.6 1 22 564 585 564 587 0.89 19 20 0.00012 0.0084 17.1 2.5 2 23 600 622 600 622 0.97 20 20 1.6 1.1e+02 4.1 0.1 1 11 670 680 670 683 0.91
Sequence Information
- Coding Sequence
- ATGGGTGAGACTCGGGCCTTTACCTGTGATTACTGCAGCAAATCATTCACCAGAAAAGATCATTTAGCAAAACACATCAATGTTGTACATTTACGGTTAACGCAATGCCCTGTATGCAAACAAAAATTCAGCAACCTCAAATCAGTACAAAAACATATGTCCCTTGGCCACAATAGTTTGGGTGAAAGTTATCCCGAATGTGATTTGTGCGGCAGAacttttaaaagaaaacaaaatgtcCGCTCCCATTTAATAACAATTCACATGCAAGGAGTCTCTACACATGAATGCCCATGCTGCAAGAAAACTTTTACAACGCAGCGCAACCTTCGAAGACATACCAATCAAATCCACAACCCCTACGTGCAACATCCACAGTGCAATTATTGCTCGAAAacttttaaaagtaaatacacACTGATCATGCACATACAGAGTACTCATACAAAAGTATCAGGCACTGTCAAATGTCACTTATGTGATCGAACATCGGTCAATGAAAAGAATCTGCGGAGGCATATAGTGAGATTTCATCGGCAGAGAACGAGTTTCAAATGTGACATGTGTACAAAAGTTTACACTTGCAGTCAGAATTTACGGCGGCATTGCAGAACTGAACATAATGTTATTAAGACTGAGAAGTTCATAGAGGAAGAAATAACACCGCTGGAATACATTCAGCTTTATAATTGTGATAATTGTGATCAGTCTTATCAGGAGGAAAGTCAGTTGCGACATCATGTTAAAATTGAACACACATTCGATGTATTCTATAATTACTGCAGAAACTCGCTGTTAACGCAAGAGGCGATCAAGGAAGAATACAAAAAGTTATCCAAAGATGAGAATCACACATGTGAATTTTGTGAATTGACATTTTCTGTTGTCTACGACTTGAAAGAACATATGAAATATAAGCATGATATAGACTATTGTGTGTCAAAGTGTAATGTATGCTTTACTAAGTTCTCAAATAAGTCCACGTTAGACGACCATAGAAAATTCTGCTTAGCCCCGCCTAACACATACAACTGCAACTACTGCGATAAAATATTCACATACTTAACAAGCTTAGAGTTCCACATACAGATCTTTCATCCCAACATCCAGTTGCCGGAAATATCTGAGACATCTACGAACAACGAAGAATCAAATATCTTCAAATGCACCGCTTGTAGCAGAGTCTACAACACAGACAGGTCTTTGAAACAtcattttaaattgaaacaCACGTCAGACAAAGAAGTCCAATGCACATACTGCCACAAAATATGCAATAACAAGTATTATTTAGCGAATCATATTAAAATTGTGCATAGTAGTTTTGAATTGACTAAATGCGACTATTGTGATAAACAGTTTAAGTCCAAGCGTAACATACGGAGACATATTGAATACACCCATCTGGGTAAGCAGAGATATAAATGTGTGGAATGCGAGACGCTTTTTAAAGAAAAACGCAGCTTGAGAAAGCATGTACGAATCAAACACCCCAACTCAGCCTCATTCCCTCAATGTCATATATGCAGAAAACGTTTCGAATCTGCAAAATCGTGTAAAATCCATCTGAAACTAGTCCATTCGTTCAACATGAACACGCATCCATGTCACTTATGCAGTGTATCGTTCACATCAACCGAATTGCTCGCAGTACATTTTCAGACTAACCATTTAGCGCAGGATAGCATATTTAAGTGCGAGGAATGCAATCTCATTTTTAAAGGACAGGATAATTTTGACAATCACAATGGTATGTATCACATCGTTCCGTCTAATGTTAAACAGAAAATTCTGCCAAAATGCGTGATATGTGTGAAGGATTTCAGCACAAGAAAGACTCTCAAgagacatataaaaaaattccacAATGATTACAATATGGAGGATCTCGCCAACTATGGCAATGCAAATAAGCTTTTTAATTGtccaaattgtttaaaaaaaatacaagaggAGGCCACTTATAAATTGTACATAAAAGTGAGACATATTAAAGAAGCTACGGTTTTTACTTGTGACTTATGTGACACTTCTTACAGCCCATTAGAGTTTGCAATACAAAGGAGCAAAAGCAAAATGGGTATTCAAGATAAAACTAAGCTGATGTTAAGCGAGTTGTGTACAGCAGAAATGAGTGAAGACTCGGAGAATGGACTTCATGaagaaagtaaaattaaaaaagaaccaGTGTGCGTGTCTGATGATTAA
- Protein Sequence
- MGETRAFTCDYCSKSFTRKDHLAKHINVVHLRLTQCPVCKQKFSNLKSVQKHMSLGHNSLGESYPECDLCGRTFKRKQNVRSHLITIHMQGVSTHECPCCKKTFTTQRNLRRHTNQIHNPYVQHPQCNYCSKTFKSKYTLIMHIQSTHTKVSGTVKCHLCDRTSVNEKNLRRHIVRFHRQRTSFKCDMCTKVYTCSQNLRRHCRTEHNVIKTEKFIEEEITPLEYIQLYNCDNCDQSYQEESQLRHHVKIEHTFDVFYNYCRNSLLTQEAIKEEYKKLSKDENHTCEFCELTFSVVYDLKEHMKYKHDIDYCVSKCNVCFTKFSNKSTLDDHRKFCLAPPNTYNCNYCDKIFTYLTSLEFHIQIFHPNIQLPEISETSTNNEESNIFKCTACSRVYNTDRSLKHHFKLKHTSDKEVQCTYCHKICNNKYYLANHIKIVHSSFELTKCDYCDKQFKSKRNIRRHIEYTHLGKQRYKCVECETLFKEKRSLRKHVRIKHPNSASFPQCHICRKRFESAKSCKIHLKLVHSFNMNTHPCHLCSVSFTSTELLAVHFQTNHLAQDSIFKCEECNLIFKGQDNFDNHNGMYHIVPSNVKQKILPKCVICVKDFSTRKTLKRHIKKFHNDYNMEDLANYGNANKLFNCPNCLKKIQEEATYKLYIKVRHIKEATVFTCDLCDTSYSPLEFAIQRSKSKMGIQDKTKLMLSELCTAEMSEDSENGLHEESKIKKEPVCVSDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -