Nkoe013459.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nemapogon koenigi
Gene Symbol
-
Assembly
GCA_963924495.1
Location
OZ004643.1:3883434-3909003[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.8e-05 0.0068 17.4 1.5 1 23 419 441 419 441 0.96
2 20 0.0071 0.49 11.5 0.4 1 20 458 477 458 480 0.92
3 20 6.5e-05 0.0045 17.9 7.8 1 23 494 516 494 516 0.98
4 20 4.2e-05 0.0029 18.5 4.6 1 23 522 544 522 544 0.99
5 20 4e-05 0.0028 18.6 5.3 1 23 550 572 550 572 0.97
6 20 9.1e-06 0.00063 20.6 7.1 1 23 578 600 578 600 0.97
7 20 1.8e-06 0.00013 22.8 2.4 2 23 607 628 606 628 0.96
8 20 0.00012 0.008 17.1 6.7 1 23 634 656 634 656 0.97
9 20 0.00011 0.008 17.1 6.5 1 23 662 684 662 684 0.97
10 20 5.6e-07 3.9e-05 24.4 1.9 1 23 690 712 690 712 0.98
11 20 1.1e-05 0.00076 20.3 7.7 1 23 718 740 718 740 0.98
12 20 2.9e-05 0.002 19.0 6.6 1 23 746 768 746 768 0.98
13 20 2.3e-06 0.00016 22.5 5.3 1 23 774 796 774 796 0.98
14 20 2.2e-06 0.00016 22.5 2.6 1 23 802 824 802 824 0.98
15 20 7.5e-05 0.0052 17.7 6.0 1 23 830 852 830 852 0.98
16 20 3.3e-06 0.00023 22.0 6.6 1 23 858 880 858 880 0.98
17 20 1.2e-05 0.00087 20.2 7.6 1 23 886 908 886 908 0.97
18 20 1.4e-06 9.4e-05 23.2 6.0 1 23 914 936 914 936 0.98
19 20 0.0012 0.081 14.0 0.4 1 23 944 966 944 966 0.96
20 20 0.88 61 4.9 3.4 1 23 974 996 974 996 0.96

Sequence Information

Coding Sequence
ATGAATCAAGAACACCATAATATAAGCACGGGCGGTAACCAGCCTCCTGGGAATTCAGAGgCTACAAGCCAGCGGTCCCAATCGCAGCAGGGTGGGTCTGGTGGCCAGTCTTCAGCTTCTGCTACGGACCTTCGAGTGAACTCTGCAGCCGTGAACGTTGCTCTTTCAAGCGTGGCCAAATATTGGGTGTTTACGAATTTATTCCCCGGGCCTATACCTCAAGTTTCAGTATATGGTCTACAACCTGGTACACGTCTTGAAAATGGTAAACCTGTCCaagaTCCTCTTGGGCAAACTCACGCTGCAATATTGAATGGTGATCCAAACATTATTCTTGGTCATTCTGGTCAGACTCCAGTTGCAGTTAGTGCAGGCGGGCAACAGATACCAGTTTCACAAATTATTGCTGCACAATCTGGACAAAATCACAGCTTGGTGGCTCACGGTTCAGCAGAGTTATCATCCCAGAGCTCGAGCACTACAGTCTCCGTGAGTGCAGGACAGAATTCTCACCATCAGGTACAGAATACTCGCGTCGAGTTTGTACAACAACATAACATTGATATGGTAATTCTTGTGGGACATTCTACTCACTTACTGCAGCAACAGCTTATGACAGCGGCCAGACCAGACCATACTAATCAACAGATTCAGCTGACTGTAAGCGAGGACGGCATCGTGACCGTGGTAGAGCCGGGCGCCGGCAAGCTCGTCGACAAGGAAGAGTTGCACGAGACCATAAAGATGCCCGCCGATCACACGCTCACGGTGCACCAATTGCAGCAAATTGTCAACCAACAGGTGATAGACAGCGTGGTACGTATAGAACAGGCGACGGGCGAGCCGGCCAACATACTGGTCACTCACAACCCTGACGGCACCACCTCGATAGAGGCGAGCGCCGTGGACCCTCTACTCATTAAAGACGAGAAGACGACCAAGATCGAGACCGCCCAGTTTGCGATCCCTACGGAGATCAAGGACCTTAAGGGCGCTATTGATTTGAAGAGTGTCGGCGGCATGGGCATGGAGGGTGCCGTGGTGAAGATATCCGCCGGCGCGAACGACCACGACCTGCACGCCATGTACAAAGTGAACGTCGAGGATCTGTCGCAGCTGCTCGCCTACCACGAGGTGTTCGGAAAGCTGAACAGTGaacagcagcagcagcagctcaAGCAATCGCAAATAATGGAGGTCGAAGTGGAGGCGGGCACCAGCGCCAACATGGAGAGCGACGGCTCGCCGGAGCACCACGCATGCGACATTTGTGGGAAAATATTTCAGTTTCGGTACCAGCTCATTGTTCACAGACGTTACCACACTGGCACCAACAGCGCTACCACGGCGGGCACCGAGCGCAAGGCAGGCTTCGCTTGCCAAGACTGTGGACAAATGTTTGCCAATGCAATTGATCTGGGCAGGCATGGAAAGTGCCATCTAGGTGAACGTGCAAAGAAAATGACACAAGACAAGCCGTACGCTTGCACCACTTGCCACAAGACGTTCGCACGGAAGGAGCACCTCTGCAATCACGTGCGCAGTCACACCGGCGAAACACCCTATAGATGCCAGTACTGCGCGAAGACGTTCACCCGCAAGGAGCACATGGTGAACCATGTACGTAAACATACCGGCGAGACTCCGCACCGCTGTGAGATATGCAAGAAGAGCTTCACGAGAAAGGAACACTTTATGAACCATGTCATGTGGCATACAGGTGAAACGCCACACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAAGAACATTTAGCGAACCATATGCGTTCCCATACAAACGATACGCCGTTACGGTGCGATATGTGCGGGAAAACTTTTACCAGAAAGGAGCACTTCACCAACCATATATTGTGGCACACGGGCGAGACCCCTCACCGTTGCGACTTCTGCTCCAAGACCTTCACTCGCAAGGAGCACCTGCTAAATCACGTCCGTCAACACACGGGCGAGTCGCCGCACCGGTGCAACTTTTGCTCGAAGTCGTTTACGAGGCGCGAGCATCTAGTGAACCATGTGAGACAGCATACTGGCGAGACTCCATTCCAGTGCGGCTATTGTCCGAAGGCGTTCACTAGGAAGGACCATTTAGttaatCACGTGAGACAACATACAGGCGAGTCCCCGCACAAGTGTTCGTATTGCACCAAGTCGTTTACCCGCAAGGAGCACCTGACAAACCATGTGCGACAACATACGGGCGAGTCGCCGCATCGGTGTACTTACTGCGCGAAGTCGTTTACGAGGAAGGAGCATCTCACTAATCATGTTCGCCAGCACACTGGAGAAACTCCGCACAAGTGCACGTACTGCCCGAAGGCGTTCTCCCGTAAGGAGCACCTCAATAACCATGTGAGACAACATACTGGCGACACTCCGTACTCGTGCGCGTATTGCAACAAGTCGTTCACAAGGAAGGAGCATCTCGTCATACATGTGCGCCAGCACACTGGGGAGACTCCGTTCAAGTGCACTTTCTGCACGAAGGCGTTCTCGCGCAAGGAGCACCTGAACAACCACGTGCACATCCACACTGGCGACAACCCCCACAAGTGTCTCTACTGCACCAAGACGTTTTCGAGGAAGGAGCATCTTACGAATCATATCAGaaTACACACGGGCGAATCCCCGCATCGTTGCGAGTACTGCCAGAAGACGTTTACCCGTAAGGAGCATCTCACGAACCATTTGAAACAGCACACGGGTGACACGCCTCATACTTGCAAGATATGTTCGAAGCCTTTTACTAGGAAGGAGCATCTCACTTCGCATATGagATCCCACACGGCTGGCGACCAGCGTCCGTACAGTTGCGGGCAGTGCGGGAAGTCGTTCCCGCTGAAGGGCAACTTGCTGTTCCACGAGCGGTCGCATAACAAGGGATCCGCGAGACAGtttaattgtgatatttgcTCTAAGGAATTCCTTTGTAAAGTTCATCTAAACGCCCATCGAGCGACCCATGTGGATGCCGGCGAGAATGCAGCGCCGGTCGCGCCCGAGCCTCCCCACGAAGGAGCGGTGGACGCGGACTGCGGTAAATGCAAGACAGAACCGGTGGACAGAAAGCCTATTATTGAAATaattccTCAAGATCCGTTAGCTATTGTGAGCTCACCATCTCAGAACAGTTCTACTGTGATGCCGATTACACAGGTGCGAAGCGGAGCTTCCAGCAATGCCCCTATCGTAGGTACCGTGACGCCCACATTCGTGACTCCCACACATCACACCGGAGGTTCTATAGCTCATCCTGTTACCGTTAATTACtaa
Protein Sequence
MNQEHHNISTGGNQPPGNSEATSQRSQSQQGGSGGQSSASATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLQPGTRLENGKPVQDPLGQTHAAILNGDPNIILGHSGQTPVAVSAGGQQIPVSQIIAAQSGQNHSLVAHGSAELSSQSSSTTVSVSAGQNSHHQVQNTRVEFVQQHNIDMVILVGHSTHLLQQQLMTAARPDHTNQQIQLTVSEDGIVTVVEPGAGKLVDKEELHETIKMPADHTLTVHQLQQIVNQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAVDPLLIKDEKTTKIETAQFAIPTEIKDLKGAIDLKSVGGMGMEGAVVKISAGANDHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEQQQQQLKQSQIMEVEVEAGTSANMESDGSPEHHACDICGKIFQFRYQLIVHRRYHTGTNSATTAGTERKAGFACQDCGQMFANAIDLGRHGKCHLGERAKKMTQDKPYACTTCHKTFARKEHLCNHVRSHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPLRCDMCGKTFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPKAFSRKEHLNNHVRQHTGDTPYSCAYCNKSFTRKEHLVIHVRQHTGETPFKCTFCTKAFSRKEHLNNHVHIHTGDNPHKCLYCTKTFSRKEHLTNHIRIHTGESPHRCEYCQKTFTRKEHLTNHLKQHTGDTPHTCKICSKPFTRKEHLTSHMRSHTAGDQRPYSCGQCGKSFPLKGNLLFHERSHNKGSARQFNCDICSKEFLCKVHLNAHRATHVDAGENAAPVAPEPPHEGAVDADCGKCKTEPVDRKPIIEIIPQDPLAIVSSPSQNSSTVMPITQVRSGASSNAPIVGTVTPTFVTPTHHTGGSIAHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-