Nkoe018582.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004650.1:3920275-3921777[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-11 2.5e-08 34.0 0.0 1 40 12 50 12 54 0.93 2 2 2 1.1e+03 0.0 0.0 23 31 97 105 97 105 0.88
Sequence Information
- Coding Sequence
- ATGTCTGTCTTAAAGCAAAAACGCGCAACTTGGACGGAAGACAACTTGGCAGCGGCAGTTCTTGCGGTACGTAACGGATTGTTGACTTACAAAGCATCGGATCAATATGGCATTCCGCGAAGAACTATTAGAAACCACGTAGAAAATGGGAATATTTACAAAAGTTTAGGAAGACACACTATACTTACACGAGATCAAGagaaagattttgtaagacgtaTTATAAGATTTTCTGACCTAGGCATACCTATGACGCCAAAAATGATTAGAATTCAGGCATTTGCTTTTTGTCAAAAATTTGATATACCACATAATTTCAACAAAGAATCTGGACTCGCTGGAAAAGGATGGCTacgattatttttaaaaagaaacccGGAGTTAGCAAAGCGCAAGGCACAGTTTTTAAATCCAGCCCGAgcccaaaaattaaataaaccaatTGTGTCCCACCATTTTAAAGAAATCAGAAAACTCTACGATGAACTAGATCTACATGACCATCCGGAAAAAATTTATAACATGGATGAAAAAGGGTGCAGGCTTACTTTGCATCACCAACAAACAGTGATCTCACAGAAGGGTGCGAAAAGAGTGCACATGCAAGTGGcagaacatggagaaaacgtaACCGTTGTTGGTTGCGCCAATGCATTAGGGACTCCTGTACCTCCTATGATTCTGTTTAAAGGGAAAAGGATGAAGCCGGAGTTCGACGAAAATTTACCACCAGGATCAATTGTTCATATGGCTTCTAAAGGCAGTATGACGACGGAATTATTCATCATCTTCATAAAACACTTGTCCAAATATAAGACGTTCGGTAAATATCTGCTCATTTTTGATGACGCAAAAAGCCATCTGGATTTCCGCATTGCTGAGGAAGCGGAAAAAAGCGACATAGTACTTTACTGCTTGCCGTCAAACACGACACATGAGCTTCAGCCTATGGATAAATCATGTTTTAAGCCATTTGAAACTTTTTGGGACCAAGAAGTTTTACAATTTCTTTATGAAAATCGTGCAAAAGCAATCTCAAAACGAcattttaacgaaattttaaCACGGGTATGGTACAAGTGCATGACAACTGCAAACATTACGAGCGGGTTTAGGGCTACTGGCCTTTACCCACTAAACCCTAATGCAATACCTGAAATAGCATTTGATCCATCCATTCTAACCGAACGTCCAATTAATTCCATAATGCCTAATAACAATGAAGAATATATACAGCCATcaccaaattatttatttacacactcTGACACTGCTACAAACGCTGACGATGGCTCTCACTCCTTGTCACCTATAGCCACTTTACAGGAACTTCGAGATTTGATTATGATAGAATATTTGCCCACAACACCTGGTACACCAGATATTCAAGTACTGCAACATTATTCTTCTTCGTCACGCCAACAAATGCAGGTATTAGGGAAcaagaaaattatgaaaatcgGCCTGGAACAAGTGGTTTATCCAATACTCACCGTCTTGTAG
- Protein Sequence
- MSVLKQKRATWTEDNLAAAVLAVRNGLLTYKASDQYGIPRRTIRNHVENGNIYKSLGRHTILTRDQEKDFVRRIIRFSDLGIPMTPKMIRIQAFAFCQKFDIPHNFNKESGLAGKGWLRLFLKRNPELAKRKAQFLNPARAQKLNKPIVSHHFKEIRKLYDELDLHDHPEKIYNMDEKGCRLTLHHQQTVISQKGAKRVHMQVAEHGENVTVVGCANALGTPVPPMILFKGKRMKPEFDENLPPGSIVHMASKGSMTTELFIIFIKHLSKYKTFGKYLLIFDDAKSHLDFRIAEEAEKSDIVLYCLPSNTTHELQPMDKSCFKPFETFWDQEVLQFLYENRAKAISKRHFNEILTRVWYKCMTTANITSGFRATGLYPLNPNAIPEIAFDPSILTERPINSIMPNNNEEYIQPSPNYLFTHSDTATNADDGSHSLSPIATLQELRDLIMIEYLPTTPGTPDIQVLQHYSSSSRQQMQVLGNKKIMKIGLEQVVYPILTVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -