Nkoe014562.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004644.1:9553937-9556183[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-13 1.1e-10 41.6 0.0 1 40 12 50 12 54 0.93 2 2 3.1 1.7e+03 -0.6 0.0 23 31 97 105 97 105 0.88
Sequence Information
- Coding Sequence
- ATGTCTGTCTTAAAGCAAAAACGCGCAACTTGGACGGAAGACAACTTGGCAGCGGCAGTTCTTGCGGTACGTAACGGATTGTCGACTTACAAAGCATCGGATCAATATGGCATTCCGCGAAGAACTATTAGAAACCACGTAGAAAATGGGAATATTTACAAAAGTTTAGGAAGACACACTATACTTACACGAGATCAAGagaaagattttgtaagacgtaTTATAAGATTTTCTGACCTAGGCATACCTATGACGCCAAAAATGATTAGAATTCAGGCATTTGCTTTTTGTCAAAAATTTGATATACCACATAATTTCAACAAAGAATCTGGACTCGCTGGAAAAGGATGGCTacgattatttttaaaaagaaacccGGAGTTAGCAAAGCGCAAGGCACAGTTTTTAAATCCAGCCCGAgcccaaaaattaaataaaccaatTGTGTCCCACCATTTTAAAGAAATCAGAAAACTCTACGATGAACTAGATCTACATGACCATCCGGAAAAAATTTATAACATGGATGAAAAAGGGTGCAGGCTTACTTTGCATCACCAACAAACAGTGATCACACAGAAGGGTGCGAAAAGAGTGCACATGCAAGTGGcagaacatggagaaaacgtaACCGTTGTTGGTTGCGCCAATGCATTAGGGACTCCTGTACCTCCTATGATTCTGTTTAAAGGGAAAAGGAAGAAGCCGGAGTTCGACGAAAATTTACCACCAGGATCAATTGTTCATATGGCTTCTAAAGGCAGTATGACGACGGAATTATTCATCATCTTCATAAAACACTTGTCCAAATATAAGACGTTCGGTAAATGTCTGCTCATTTTTGATGGCGCAAAAAGCCATCTGGATTTCCGCATTGCTGAGGAAGCGGAAAAAAGCGACATAGTACTTTACTGCTTGCCGTCAAACACGACACATGAGCTTCAGCCTATGGATAAATCATGTTTTAAGCCATTTGAAACTTTTTGGGACCAAGAAGTTTTACAATTTCTTTATGAAAATCGTGCAAAAGCAATCTCAAAACGAcattttaacgaaattttaaCACGGGTATGGTACAAGTGCATGACAACTGCAAACATTACGAGCGGGTTTAGGGCTACTGGCCTTTACCCACTAAACCCTAATGCAATACCTGAAATAGCATTTGATCCATCCATTCTAACCGAACGTCCAATTAATTCCATAATGCCTAATAACAATGAAGAATATATACAGCCATcaccaaattatttatttacacactcTGACACTGCTACAAACGCTGACGATGGCTCTCACTCCTTGTCACCTATAGCCACTTTACAGGAACTTCGAGATTTGATTATGATAGAATATTTGCCCACAACACCTGGTACACCAGATATTCAAGTACTGCAACATTATTCTTCTTCGTGCCACACGCCAACAAATGCAGGTATTAGGGAAcatgaaaattatgaaaatcgGCCTGGAACAAGTGGTTTATCCAATACTCACCGTCTTGTAGATTATAGCGATTCTGATGATAATGAATCTTTGGAATCTGAAATAATGAGAAAATTTATAAGAAGGCCAGCACGACGATTAAGGGTATATTCTTCTTCCAATTCAGAAACAGACTCGTTGAATGAAAGCTCCAAAAACACGTGTCTGCAACTACCTCAGCATTTAGCAACTGACCCGGTGAATGAAAGTTCCAAAAATGTGACTCAGCATCAGCATTCAGGAACAGACATTCAGCGTATGTCTACGAGCCCAAAAAATCTATCCCAGGATCAGGATTTTTCAAATGAAGATAACATACCTTTAGGACAATTAAGTACTAAATCACCATTTCATAAATTCATGCCAACACCTGATTATGGACACATTAAAACACGCCCACGAAGAAAAGCATTAAACTACATGGGTCAAAGAGTGacaaaagatttatttaataagaaagATACAAACAGCACAgaaaagataaagaaaactTCGAAAGAAGTAACAAAACTTGTaagaaaagaaacaaataacaaagcaagtaaaaaaactgaaaggactactaagaaagaaaagaaaatagcaGGAAATAATTCTAAAGGAAAGAATAGTGAAAGCTGGTTCTGCCATGCCTGTCACGAAGACAAAGTAGCAGATATGCGACCATGCAAGGAATGTTTTAAATGGTATCACGAGGATTGCATCGGAATAACCAAAGATGATTCAGAGGCCTTTTTATGCCCTGATTGTGACAAAAATTGA
- Protein Sequence
- MSVLKQKRATWTEDNLAAAVLAVRNGLSTYKASDQYGIPRRTIRNHVENGNIYKSLGRHTILTRDQEKDFVRRIIRFSDLGIPMTPKMIRIQAFAFCQKFDIPHNFNKESGLAGKGWLRLFLKRNPELAKRKAQFLNPARAQKLNKPIVSHHFKEIRKLYDELDLHDHPEKIYNMDEKGCRLTLHHQQTVITQKGAKRVHMQVAEHGENVTVVGCANALGTPVPPMILFKGKRKKPEFDENLPPGSIVHMASKGSMTTELFIIFIKHLSKYKTFGKCLLIFDGAKSHLDFRIAEEAEKSDIVLYCLPSNTTHELQPMDKSCFKPFETFWDQEVLQFLYENRAKAISKRHFNEILTRVWYKCMTTANITSGFRATGLYPLNPNAIPEIAFDPSILTERPINSIMPNNNEEYIQPSPNYLFTHSDTATNADDGSHSLSPIATLQELRDLIMIEYLPTTPGTPDIQVLQHYSSSCHTPTNAGIREHENYENRPGTSGLSNTHRLVDYSDSDDNESLESEIMRKFIRRPARRLRVYSSSNSETDSLNESSKNTCLQLPQHLATDPVNESSKNVTQHQHSGTDIQRMSTSPKNLSQDQDFSNEDNIPLGQLSTKSPFHKFMPTPDYGHIKTRPRRKALNYMGQRVTKDLFNKKDTNSTEKIKKTSKEVTKLVRKETNNKASKKTERTTKKEKKIAGNNSKGKNSESWFCHACHEDKVADMRPCKECFKWYHEDCIGITKDDSEAFLCPDCDKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041674;
- 90% Identity
- iTF_01041674;
- 80% Identity
- -