Nkoe001198.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004629.1:14109294-14109632[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.9e-15 4.3e-12 46.1 0.0 2 39 17 55 16 59 0.95
Sequence Information
- Coding Sequence
- ATGGTGCGGAATTACAAGAAAAAAGGAACTAGGTCTACAttaataaatgaagaaaatatgtCCTCGGCAATAAAAGATGTTTCGGAAGGAAAAATGTCGTATAGAAAAGCAGCGGATAAGTATAACATTAAGGCCTCAACGTTGGAGTGTCGGGTAAAGAAAATGAAAGATAAACATGATGATGCTGACGCGAGCCATACGTATCAGTCTAAATTTACCAGTTGTCAAGTATTTTCTAAAGAACAAGAGTCCCAATTGAACGAATATATAGAAAAAAGCTCAAAATTGCATTACGGGCTCACAATATTACAATtactaattacaataattaGTTATTAA
- Protein Sequence
- MVRNYKKKGTRSTLINEENMSSAIKDVSEGKMSYRKAADKYNIKASTLECRVKKMKDKHDDADASHTYQSKFTSCQVFSKEQESQLNEYIEKSSKLHYGLTILQLLITIISY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041671; iTF_00411352; iTF_01041679;
- 90% Identity
- iTF_01041671;
- 80% Identity
- -