Nkoe006673.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- lola
- Assembly
- GCA_963924495.1
- Location
- OZ004634.1:9207241-9211585[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-17 4.9e-14 52.3 0.0 1 43 322 365 322 367 0.94
Sequence Information
- Coding Sequence
- ATGGATCAAAATCAACAGTTTTGTCTGAGATGGAACAACCACCAACCCAACTTTATATCAGTATTTACAACACTGCTAAACACTGGCTCTTTAGCAGATGTCACATTATCTGCAGAGGGTAAGCAACTGCAGGCACATAAAGTTGTGCTAAGTGCATGTAGTGTGTATTTCCAAACTCTGTTTATGTCTAATCCTTCATCACACCCTATAGTGATTCTAAAGGATGTCAGATTTTCAGATCTACGCATAATAgtagattttgtttattatgGCGAGGTAAACATAACAGAAGATCAACTACCACTGTTGGTAGAGACGGCAAAGTTATTGAAAATAAAGGGTCTGACTGAAATGCCTGTTTCTGTATCATTAATAAAAGCACAATGTACATCAGCTGCAGAACAAACATCAAATGAACATATTGAGCCACAGCCTTTAAAAGACTGCAGCATGCCATCAGATGAGACCTCACCTTCAAAAAACAGAAGATTTAGGAAAGCCTCTAGCTGCTCCAATACAGACCACAATGAAGATACCACTTCTCAAACAATATCAAAAACGGATGCCATCACAGTCAGCAGTCTACACAACCAAAACACAAATGAAAATGAAGAACCAGATATACAGCAATTACCACCACAGCCTCCAAACAGTATTGGTGTTGATCAACTGCTCGACATATATCCTCCATATATACCCGAAGACGGAATGATACCTGGAAATGAAAATATGATGGGACAATCATGTTACTCTCGATTTAACACTGCTTGCATCGAAAACGGGCTGGAAACAGACTCTTCAATGGCTTTTCACATGAATAACAACCAAATGATGGAAATGAATAACTTTGGACCAAATGAGAATATGGCAGAACAATCCTCCGGACCTCTGGAGTCTCTAGTGCAGCAAGGACCGCCGCCTCAAATACCACATCAGAAGATGCGACGGAAGTCGAAGCCACAGTCTGAAGAACACTTTCAGCGGGCTCTCGAGGCCGTGCGTATTGGCGGCATCGGGTTCTGTAAGGCAGCTCGCTTATTCGGAGTCAACAATCGCACGCTCTGGCTCGAATACAAAAAGAGAGGCTACACAAATAATAGGATGAGCATTAAAAAGCGTATAAAAATCGAGAACAACTCTCCGCCTCCCAACCAACAAACGGCCCTGCTACCGCAGCAACCTGTACCGATGATCGGGTTCTTAGAATCGCGGCAGGTTGACTATCCGAACATGCAGAGTGTTAACGCGGCCCTCGGGCTTCACAGTCTCAACTTCAACACAATGCAATGA
- Protein Sequence
- MDQNQQFCLRWNNHQPNFISVFTTLLNTGSLADVTLSAEGKQLQAHKVVLSACSVYFQTLFMSNPSSHPIVILKDVRFSDLRIIVDFVYYGEVNITEDQLPLLVETAKLLKIKGLTEMPVSVSLIKAQCTSAAEQTSNEHIEPQPLKDCSMPSDETSPSKNRRFRKASSCSNTDHNEDTTSQTISKTDAITVSSLHNQNTNENEEPDIQQLPPQPPNSIGVDQLLDIYPPYIPEDGMIPGNENMMGQSCYSRFNTACIENGLETDSSMAFHMNNNQMMEMNNFGPNENMAEQSSGPLESLVQQGPPPQIPHQKMRRKSKPQSEEHFQRALEAVRIGGIGFCKAARLFGVNNRTLWLEYKKRGYTNNRMSIKKRIKIENNSPPPNQQTALLPQQPVPMIGFLESRQVDYPNMQSVNAALGLHSLNFNTMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041951;
- 90% Identity
- iTF_01041951;
- 80% Identity
- iTF_01041951;