Nkoe010980.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004640.1:526295-537555[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-10 1.1e-07 32.0 0.0 4 39 413 449 411 453 0.90 2 4 2.9e-10 1.6e-07 31.5 0.3 3 39 466 502 464 505 0.91 3 4 9.6e-14 5.1e-11 42.7 0.2 4 45 522 564 519 564 0.96 4 4 1.6e-17 8.7e-15 54.7 0.1 1 44 571 615 571 616 0.96
Sequence Information
- Coding Sequence
- atgttaaataatatgCAAGAAGCTCACAACATTCCTCACCATGTGCTTATTCAAGACGTTACAACACGATGGGACTCCACACTACAAGCGCTACGAAGACTGCAAGAGCAGAGAGTTGCAGTTCAAGCTTCGTTGCCTCACATTAAGTGTAAAGTGGAATTGGCAACAGAAGAATGGATTTTGTTGGAACAGGTTGTATCTATATTGACCTATTTTGAAGAAGCCACGAAAGCGCTAAGCGAAGATACTGCTTGTTTGTCCGATGCTATACCTCTTATTAACAGCCTGCGAAATATTTTAGAGAAAATCAAGGACTCTGAAGACATCGATAGACCAGAATATCAGACATTAGCCGTAGATTTAATAGCAGGGCTTAATGATAGGTTCAGTTATTTGGAGAACGAAAACTCATTTATTTTGGCGACTACCTTAGATCCGCGCTATAAACTGCGCACATTCAAACTACAAGCTACAAACATCCTAGCAAAAAGAAATCTTATTTCAATAATTACAAATACATATGCGGATTGTCCACCTTCAGAAAATGTAGCGAGTTGTAAAGTTAATACTAAGAGTTTTACTAGTATCTGGAGTGCTTGCGATGATTTAATTAAACAAGCAGAAGAAGATGAGCCATTATCTAATATATCTGCTCATCCTGAGCAAGATGAGGTTGAAACTTTTTTGAGATGTCCCAACATTCCTAGAACTGCAGATCCAAGAGAATACTGGCGAAAGGAAAACAGAtatcctaatttaaaaaaaatcgcgcaACAATACCTATCCTATCAGTTGAGCTCTGTTGCTTCCGAGCGTCTCTTTTCTACTGCAGGTCTGGATTTCTCTGATGCACACGTGAAGAACGAGTCGTGTTTGGAGCAAAATGACATGTTGGTCTCCGGACCTCTGTTGCAACTACAGAGTTCGGACACCCTGGAGGAATTGTGCCTGGCAGGTCCTGCTGCGACCAGGGTCCAAGTAAAGTTAGAACCTCGTGACCCTCCTGAACGTTTACAGACCCTGGAACTACAACCTCGAGGACAGAGGTctatgTGTCCTTCCCAAATGGAGCAGCACATGATACTGACAGCTGAAGATACCGAGTTTGTTCCGCTACTTGTTAAGGATGAACCTATGTCCGAAGGAGAACAACAACAGTTGAGTGGCGAGGATACCAGCGACTCGTGTAGTGGTGAGCCTACCGTCAGTAAACCTGCCAAGAGCTGGAGCCAGCGGGACATGGACAACGCTCTTGAGGCTCTCAGGAAACACAATATGAGTCTAACTAAGgcaTCAGCAACATATGGTATTCCGTCCACAACGTTATGGCAGCGCGCGCACCGTCTTGGTATAGATACTCCCAAGAAGGAAGGAGCAGCCAAGAGTTGGAGTCCGCAACACTTACGAGCTGCCTTGCTAGCTTTGAGAGCTGGGGCACTTTCGGCTAATAAAGCAAGTAAAGCATATGGTATCCCCAGCAGCACCTTATACAAGATAGCTCGTCGTGAAGGTATCCGTTTAGCCGCTCCGTTCAACGCAGCTCCCACAGCTTGGAGTGCAGCTTCGTTATCGCGAGCGCTACATGACATAAGATCTGGTAGAGCTTCTGTGCAGAGGGCTTCAGCTCAGTACGGTATTCCTACAGGTACTTTGTACGGACGGTGTAAAAGAGAAGGTATAGAACTGTCACGCTCTAACCCCACACCGTGGTCTGAAGATGCCATGGGAGAAGCACTGGAAGCTGTCAGGATCGGTCAAATGTCAATAAACCAGGCTGCTATACACTACAATCTGCCATACTCCTCGCTGTACGGACGGTTCAAGAGATGCAAGTACCAAGTACAGGCTCACCACATGCCCCACCAGAACATGAGTCAAGACGCGGTCGAGGATCCTTACTCGCATTATCACAACGTTCCCACTACAAATGTAGCTCAAGAAGATATCAACTACATGCATCAATATCAAGAACACCCACATACATTGTTCCATGGTAATGGTGGAATACAAAATGATGTTTATAGTGGACAAGCAATGTACTACAACAATGGGATCGCTACAAGTTGA
- Protein Sequence
- MLNNMQEAHNIPHHVLIQDVTTRWDSTLQALRRLQEQRVAVQASLPHIKCKVELATEEWILLEQVVSILTYFEEATKALSEDTACLSDAIPLINSLRNILEKIKDSEDIDRPEYQTLAVDLIAGLNDRFSYLENENSFILATTLDPRYKLRTFKLQATNILAKRNLISIITNTYADCPPSENVASCKVNTKSFTSIWSACDDLIKQAEEDEPLSNISAHPEQDEVETFLRCPNIPRTADPREYWRKENRYPNLKKIAQQYLSYQLSSVASERLFSTAGLDFSDAHVKNESCLEQNDMLVSGPLLQLQSSDTLEELCLAGPAATRVQVKLEPRDPPERLQTLELQPRGQRSMCPSQMEQHMILTAEDTEFVPLLVKDEPMSEGEQQQLSGEDTSDSCSGEPTVSKPAKSWSQRDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSPQHLRAALLALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWSAASLSRALHDIRSGRASVQRASAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQVQAHHMPHQNMSQDAVEDPYSHYHNVPTTNVAQEDINYMHQYQEHPHTLFHGNGGIQNDVYSGQAMYYNNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -