Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000068.1:1376036-1380013[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00043 0.042 15.2 1.1 2 23 201 223 200 223 0.94

2 16 1.2 1.2e+02 4.3 1.7 1 20 333 352 333 354 0.93

3 16 0.0041 0.4 12.1 0.9 1 23 403 425 403 425 0.98

4 16 0.00024 0.023 16.0 0.8 1 23 430 453 430 453 0.96

5 16 0.017 1.6 10.2 5.7 1 23 490 513 490 513 0.97

6 16 0.0031 0.3 12.5 5.2 1 23 528 551 528 552 0.96

7 16 0.021 2.1 9.8 0.5 1 23 572 594 572 594 0.96

8 16 0.55 53 5.4 0.1 2 23 638 659 638 659 0.95

9 16 0.00059 0.057 14.8 1.0 1 23 699 721 699 721 0.96

10 16 0.0093 0.9 11.0 3.6 1 23 732 755 732 755 0.96

11 16 0.27 26 6.4 0.5 1 23 767 790 767 790 0.97

12 16 5.3e-06 0.00051 21.2 2.1 1 23 828 851 828 851 0.98

13 16 0.094 9.1 7.8 0.6 1 23 859 882 859 882 0.79

14 16 0.097 9.4 7.8 0.1 5 19 890 904 887 904 0.90

15 16 6.3e-06 0.00061 21.0 3.4 2 23 913 935 912 935 0.97

16 16 0.41 40 5.8 0.9 1 23 987 1010 987 1010 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00043	0.042	15.2	1.1	2	23	201	223	200	223	0.94
2	16	1.2	1.2e+02	4.3	1.7	1	20	333	352	333	354	0.93
3	16	0.0041	0.4	12.1	0.9	1	23	403	425	403	425	0.98
4	16	0.00024	0.023	16.0	0.8	1	23	430	453	430	453	0.96
5	16	0.017	1.6	10.2	5.7	1	23	490	513	490	513	0.97
6	16	0.0031	0.3	12.5	5.2	1	23	528	551	528	552	0.96
7	16	0.021	2.1	9.8	0.5	1	23	572	594	572	594	0.96
8	16	0.55	53	5.4	0.1	2	23	638	659	638	659	0.95
9	16	0.00059	0.057	14.8	1.0	1	23	699	721	699	721	0.96
10	16	0.0093	0.9	11.0	3.6	1	23	732	755	732	755	0.96
11	16	0.27	26	6.4	0.5	1	23	767	790	767	790	0.97
12	16	5.3e-06	0.00051	21.2	2.1	1	23	828	851	828	851	0.98
13	16	0.094	9.1	7.8	0.6	1	23	859	882	859	882	0.79
14	16	0.097	9.4	7.8	0.1	5	19	890	904	887	904	0.90
15	16	6.3e-06	0.00061	21.0	3.4	2	23	913	935	912	935	0.97
16	16	0.41	40	5.8	0.9	1	23	987	1010	987	1010	0.95

Sequence Information

Coding Sequence: ATGGAtgatataattcaaaatataaataatgtgtgTCGATTGTGTTTATGTGACGATGCAAATCTTGTGTCGATTATCGAAGAAAATTCAACTTTATCCCAGAAGATAATTTCTTGTGTAAATGTTGAagtaAATATAACAGATAGAATGTCGACAATGATTTGTAACTTGTGTCTTAGTAAAGTTGACGAATggtatgattttaaaaaatgttgcgATGATGTTCAGTTCAAGTTACGCCAATGGGCGAATAGTCTCAGTGgtgataaatatatactgGGGATCACAATTAAAGAAGAAGCTATTGATACAGATTATACTGAACTGCTAATAAATAACTCTATGTGCATTAAAAGTGAACCACCTGATTCGTTATCACCGCACGTATCTGATAATGAAGATCGACCCGATTATGAATATGATGAAATGCCCGTATTGCATCCCGCCATTACCATGGAAACAAACCCCGACGATTTACTCATACCAACACTAGAATGCCCAGTCTCAATACACAGTATGGACGCGCCATTTTACAACAGCACATTTCAACAAAATGACGGAGAACACAGTACTAGATCATATCAAGATATGCGCGATACGGTCTGTCGCGTTTGCGATAAAGAATTTAGCACCTATTCCAATCGACAGCGTCACGAAAAGAACGTGCATAATTTGGAGAAAGAACTATCGATAACAGAAGTTCGATCACTGCGGAACGATCCTATGGAAGAGTACGACCACCATCAAGAAATAACAGCCGAAGATAATAGCAGCGAAACCAGCAATGTTACGCTTGAACAATTCACAGCTAGTTTACAATTGATCCAAACCACACCGGTGTCCCGGACGAAGCACAGAATTTCCGAAAAAGAATTCGCTGAGTTTAACAAACGCATCGTCGGTCAAATCGAACGCGAACGTTGTGATTGTTGTGACGTACAACATTCGCCGAAAAGTTTAATTGCACATTTGAGAAAGACTTTTATTATACCGAGTTATTCTTGTTTTTGGTGTTGTATTTCATTTCCAAATCGGTCTCAATATATGCAGCACGCGACAAAAAAGTATTGCAAACAACGAGCTCGTTTAGTTCACAGTGGGGATTATCCATTTAAAGCGTATCAACATTACCAGTGTGCCGCTTGCAAATCGTTATTCGTCaATCACATGTTGAGTGAGCatcaaaatgaaattgaatCGAATAACTTCTCTTGTGTACAATGCGGTGAACAGTTTCCGACTTTGGTTAAATGGTGCGAACACCAACAGACCCACACTGACTCAGTCCATCAATGCGAGGACTGTTCGAAAGTGTTCATCTCTGACGAAGAATTGAAAGATCATAAAACCACAGCGCACTCTAATATCAAACTTAAATTATACCGTTGTTCTGATTCGAATTCCTACAAAACTGCGTCTTCATTAGAGGACACAGAAGACGAAACCACCAAATTAGAAGATCGCATCCACAAATGTGACCTGTGCGACTGCACTTATCGACTTAGGGATTCGTTGTTGAAgcacagaaaaataaaacatggaTTGAACATGCCGTTGAAACGACGgtctaaatcaaataaattttcgtgTGGTTTTTGTAAGAAGAAATTTACGAATAATGCTTCATTGGTATTGCATAAAAGGCATGTCCATCATCGAAATAATGGCGAAACCGTAGAAAGTGATGCAGATGATTCGAACAGTGTGTTTCCACATAGTTGCGATGCTTGCTCGAGGTCGTTTCCAACTGTTAAAGCATTGTCTATTCATGCGAAATCACACGCAACCTCTCCAGCAAAAATGACTGTAAATGCTGCAGTTTCTCcagaaaaatatctaataCAAACAATGACGGTGGATGCTCCTGAAAATATAGCTGCTCCAATAAAAGTTGAGCCAGTAGAAAATAGAACTTGTGCGATTTGTCAAGATGTATTTGAAACCATTGCAGAATATCGAAAGCACGCCAAAGCGCAtcttaaaaagaaaaacaaaccTAGGAGATGTCTGATTTGtcgaaacaaatatattcgaCTGGAAAGTCATATGCGCATAAGTCACAGCGAAAATACACTTTcgaaaaaaaacaatatattttcttgCTCAGAATGCTCTGCGACATTTCGGTACCGAAGCCTTATGCTCAGGCACATGGGGCAACATTTACGAAAAGCGCATATTGGCAAAACAGTCTATAGATGCCAGTTATGTCCTAAAGTATGTGTTACATCGTTCGGGTTATCTACGCATACTAAACACGTGCACGAACATTGTGAAGATAAAGACGACTCAACGCCTTTCAAATGCGAATTATGTCCTAACTCGTACTTAACGGAACTGGGATTAGTTAGACATCGAAGACGCACGCATGGCGAACAGGAAGTAAAGCATGAAGTTAAAGAAGAAACAATGAGTGCTGAAGAGAATCACATAGAAGAAAACATTTCGAATGTAGTCAAAAAAGAATCGACACCTGTCACATACAAATGTAAACATTGCGATAAAAATTACACCCGACCAGGGCTCTGGCGAGCGCATATGCTCAAAAATCATCCAACAATGAAGATGAAAAAATTCACTTGCACCCTGTGCAATAAAATTTTCCCGTCGCAtGCTGTCGCTCTTGGACGACATATGTCTTCGCACACACGCAAGATGCCTTGCATTATTTGCAACGAATCGTTTAAAACTGAATCAGATTTATTCATGCACGATGAGGCGAATCACAGAGACGGTAAGTGTGAGTACTGTAAGCGATCATTCACGCAACCGCATTACTTAAGAAATCACATTAAATCGAAACATGCTAGAGAATCGGCACGTGAAACGGGCCAGGGGGAGGGACtgaaaaaaaccaaaaaagcCGCAATGCGTGAGAGTAAAATGAGagttaagaaaaatgtttatagCGATAACGGCATTGACACTATGAAACAAGCAGTGCGAACAGAACGTGTGTACTCGTGCACCGCTTGTAACATGACGTTTTTAAATGCAAACAAACTTCGGTTGCATGTGACGAAAACTCATAATATGGCATTAGccgattaa
Protein Sequence: MDDIIQNINNVCRLCLCDDANLVSIIEENSTLSQKIISCVNVEVNITDRMSTMICNLCLSKVDEWYDFKKCCDDVQFKLRQWANSLSGDKYILGITIKEEAIDTDYTELLINNSMCIKSEPPDSLSPHVSDNEDRPDYEYDEMPVLHPAITMETNPDDLLIPTLECPVSIHSMDAPFYNSTFQQNDGEHSTRSYQDMRDTVCRVCDKEFSTYSNRQRHEKNVHNLEKELSITEVRSLRNDPMEEYDHHQEITAEDNSSETSNVTLEQFTASLQLIQTTPVSRTKHRISEKEFAEFNKRIVGQIERERCDCCDVQHSPKSLIAHLRKTFIIPSYSCFWCCISFPNRSQYMQHATKKYCKQRARLVHSGDYPFKAYQHYQCAACKSLFVNHMLSEHQNEIESNNFSCVQCGEQFPTLVKWCEHQQTHTDSVHQCEDCSKVFISDEELKDHKTTAHSNIKLKLYRCSDSNSYKTASSLEDTEDETTKLEDRIHKCDLCDCTYRLRDSLLKHRKIKHGLNMPLKRRSKSNKFSCGFCKKKFTNNASLVLHKRHVHHRNNGETVESDADDSNSVFPHSCDACSRSFPTVKALSIHAKSHATSPAKMTVNAAVSPEKYLIQTMTVDAPENIAAPIKVEPVENRTCAICQDVFETIAEYRKHAKAHLKKKNKPRRCLICRNKYIRLESHMRISHSENTLSKKNNIFSCSECSATFRYRSLMLRHMGQHLRKAHIGKTVYRCQLCPKVCVTSFGLSTHTKHVHEHCEDKDDSTPFKCELCPNSYLTELGLVRHRRRTHGEQEVKHEVKEETMSAEENHIEENISNVVKKESTPVTYKCKHCDKNYTRPGLWRAHMLKNHPTMKMKKFTCTLCNKIFPSHAVALGRHMSSHTRKMPCIICNESFKTESDLFMHDEANHRDGKCEYCKRSFTQPHYLRNHIKSKHARESARETGQGEGLKKTKKAAMRESKMRVKKNVYSDNGIDTMKQAVRTERVYSCTACNMTFLNANKLRLHVTKTHNMALAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -