Nsal008580.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000060.1:556849-559284[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.31 30 6.2 4.5 1 23 468 490 468 490 0.97 2 10 0.0023 0.22 12.9 6.4 1 23 497 519 497 519 0.95 3 10 0.061 5.9 8.4 3.7 2 20 529 547 528 549 0.92 4 10 0.0003 0.029 15.7 0.3 1 19 557 575 557 577 0.96 5 10 6.1e-06 0.00059 21.0 0.7 1 23 585 608 585 608 0.96 6 10 0.00023 0.023 16.0 1.2 2 23 615 636 614 636 0.95 7 10 1.9e-06 0.00018 22.6 2.1 1 23 642 664 642 664 0.98 8 10 6.3e-05 0.0061 17.8 0.4 1 23 670 692 670 692 0.98 9 10 0.0001 0.0099 17.2 0.2 3 23 700 720 698 720 0.97 10 10 0.00024 0.023 16.0 2.0 1 23 753 776 753 776 0.97
Sequence Information
- Coding Sequence
- ATGGATTCGAATCTGAATAAAAATGCATATCAaccaaataatattaacagAGACAACGAATTTTATGGGGGTTGTATGTTAACAAATCCTTGTGGTCAACAGTCATCTGGGCAAAGAGGTCAACATCAACATTTTTTACCACCATATCCTATAAACAATACGATGCCGCATCAACAATTATTATACAACTCTCAAGGCCAGTCcatgtataatataatgtaCGGAGCACAACCAATGTACCGAAATCAGAATACGTTTCAACCAGCACTAGCAGCCAGTTCATTCCCTGCACCAGAAACGGCACCGCCTTGGGTATCAGAGTCCTGCGTAAGCGTACCTAGTAATACTAGTGCAGAATTATCAAAAGAGAAATACATGAAAATGAAACATGAGAATAAAATCAAAGACACAAATGCAGCTAGCTGCTGCGCACCATTGCCAGACGTCtacaaaatgaacaaaaacttttattataataataaaatggatACGCAATGGTTTTACGGTTCAAATTACGATGCTCAAAAATATAACGAACTACCATCATGTTCGCAAATCTCTAACAATTCAGGCATTCGTCATCTGAACGAATGTTGCGTGCCTAACAGAGAGACGAACGCCAAAAATATCAAATCGGTCAAGTATTGCAGTATCCAAAAATGTCCAGAGCCCGATCCGAAATTATACATGTactcaaataaatatgaaacgcACACGACCCAAATTGCTGGcACCGGTGAGGCAGGTAGCTGTTTGGAAATCGataaaaagattttattaGGGCCATGTGATATGGGCTACTATCCCGAAAATAACGATTTGCAACCGTTTGGCGTTCGCAAACTTGACGATAAAACAGAAGACTCAAATGGCGGTGGGGAGAGCGATATAGTCGTCGAGGATTCCGATGAAGAAGTTACGGATGAAAGTGAAGATAATCTAACAAATATACAACCACCGTGTTTCGTTTGTAACACTGCGGTCACAACTGTAGACTCGAATGAGTACTGCGTGATTACAGACAAAGTACCACTCACATCTTATTCGCGCAGTTGCGTATCAGAAACATTAATAACACTTTTCGGGTTAACAACAAACTTTGTGCACACCACAAATTATTCAACTTATTTGTGCAGTTCATGTATGGCACTCATAAATACTTACGATAATCTACAAGTGCAATTTGAATCGGTTAAACGCgatttaatgaataaatataaaaccacGATAGAAGCGTTAAAACAATACATTGAAGAAACGGAAGATAAACGTATTGATAACGACACAATACTCCAACAAACTTCGAATCCTAGCAATCAAATTGCTGTATCTGCGACGAGTACGAAAATGAATACGAATAAACAATACCCAGTGAGAAGAAAGATTTGCGGTagtcatatttttaaatgtcgCGTGTGTGAGAAAATATTCTCGctaaaaaaattctataaattccATATGTCCAAACATAAATCGCGTCGTAAATCATTCTTGTGCGAACGATGCGGGTGCCATTTCGTAAAGCATTCAAATCTGTTGGCGCATTTGCGACGACATTCTTCACCGCAAAAGCAATTTAAACTGAATTGTTTACATTGCAGGAAAAGCTTCGCGTACGAACGTTCGTTGCAACAACATAAATGCAATATCACCAACATGAAACCATCGTTTGTTTGTCATATATGTggtaaaataatcaaatctAGCTCTAGTTTAAAAGAACACGAGTACGATTGCTCTGGTAAACTGGCGTACGCGTGCGATAAATGCAACAGACACTTTGCATCGCCtagtaaattaaacaaacatataattGTTGATCACGATCAAAAATTCACGGTAACGTGCTCGGTATGCGGTAAAGGGTTCACAAAACATTCGGATTACAAGTTACATACTTTGGCACACTCGGATGAGAAGAGTTTTAAGTGTACGGTGTGCGGGAAGACGTATAAGACAttgagtaatttaaattatcattcGAAAGTGCATAACGCTACGTTGCCGTTCAGTTGCAACGTGTGCCAGAAGGGATTTTTGCGGCGGGAGAATTTACAAGCACACTTAAACATACATAACGGTCTGAAGCCGTTCGGTTGTGTTATTTGCGAAAAGAAGTTTGCGTCGCAAAAGAATCTGGACGCGCATTTGAAGGTGCATAATGGGAGCACGCGCAAAACAGCATGCACCGTGTGCGGTAAACAGATTATTCATGGTTTAGATGAACACATGCGGACGCACTCTAATCAAAAGGACTTTCAGTGTGATTCTTGTGATATGAAATTTTACACGAAAGGAGCTTTGGCTAAACACAAGAAGAGGAAACATGAGAACATTGATGTATTGTga
- Protein Sequence
- MDSNLNKNAYQPNNINRDNEFYGGCMLTNPCGQQSSGQRGQHQHFLPPYPINNTMPHQQLLYNSQGQSMYNIMYGAQPMYRNQNTFQPALAASSFPAPETAPPWVSESCVSVPSNTSAELSKEKYMKMKHENKIKDTNAASCCAPLPDVYKMNKNFYYNNKMDTQWFYGSNYDAQKYNELPSCSQISNNSGIRHLNECCVPNRETNAKNIKSVKYCSIQKCPEPDPKLYMYSNKYETHTTQIAGTGEAGSCLEIDKKILLGPCDMGYYPENNDLQPFGVRKLDDKTEDSNGGGESDIVVEDSDEEVTDESEDNLTNIQPPCFVCNTAVTTVDSNEYCVITDKVPLTSYSRSCVSETLITLFGLTTNFVHTTNYSTYLCSSCMALINTYDNLQVQFESVKRDLMNKYKTTIEALKQYIEETEDKRIDNDTILQQTSNPSNQIAVSATSTKMNTNKQYPVRRKICGSHIFKCRVCEKIFSLKKFYKFHMSKHKSRRKSFLCERCGCHFVKHSNLLAHLRRHSSPQKQFKLNCLHCRKSFAYERSLQQHKCNITNMKPSFVCHICGKIIKSSSSLKEHEYDCSGKLAYACDKCNRHFASPSKLNKHIIVDHDQKFTVTCSVCGKGFTKHSDYKLHTLAHSDEKSFKCTVCGKTYKTLSNLNYHSKVHNATLPFSCNVCQKGFLRRENLQAHLNIHNGLKPFGCVICEKKFASQKNLDAHLKVHNGSTRKTACTVCGKQIIHGLDEHMRTHSNQKDFQCDSCDMKFYTKGALAKHKKRKHENIDVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039602;
- 90% Identity
- iTF_01039602;
- 80% Identity
- -