Nsal000559.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria salina
Gene Symbol
-
Assembly
GCA_944039265.1
Location
CALUEJ010000003.1:225796-227760[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.036 3.5 9.1 1.1 1 23 180 202 180 202 0.95
2 11 0.0026 0.26 12.7 3.6 1 21 208 228 208 233 0.93
3 11 0.00069 0.067 14.5 1.6 1 23 315 337 315 337 0.98
4 11 0.02 1.9 10.0 4.5 1 23 343 365 343 365 0.97
5 11 0.044 4.3 8.9 2.0 1 23 386 408 386 408 0.97
6 11 8.5e-05 0.0082 17.4 1.1 1 23 414 436 414 436 0.97
7 11 5.3e-05 0.0052 18.0 2.0 1 23 442 464 442 464 0.99
8 11 3.4e-08 3.3e-06 28.1 1.1 1 23 470 492 470 492 0.99
9 11 5.7e-06 0.00056 21.1 0.3 2 23 501 522 500 522 0.96
10 11 0.32 31 6.2 3.5 1 23 528 550 528 550 0.97
11 11 0.0034 0.33 12.3 3.8 1 23 556 578 556 578 0.98

Sequence Information

Coding Sequence
ATGAAAGACAAAGAAAGCGATGATGATATATCGTACTATGATATGTTGTTAACTTCCGTACCTGATTTGATTTCGGACGATGACCAGTTATCCACATTAATATGTATTGAATGCCAGGAACAATTAATAGATACGTATAGTCTTATAAGCAAATGGCAACAATCgcgcaaaatattaaataaatataaaaagcaaATGAACTTCACGTTTTATACAGACAAAGATGAATTTACTTACTCGACCGCAACTGGCTATAAAAACATTAACGATCTAATAACATCAGTCGTATCAGACGATAATGTAGAAAATGATCACACTTCTGGAGCACCTAATTCGAAAGATTTTATCGAGAGAGTAAGAACAGATACAATACTTCCGATAAATAGCATTGAGAAAAAATCAACAAGTTTAACAAATTGCGATTTTTCGAAAGTCTACGAAGCAATCAAAGCAAATAAACGCTCAACTTACACACTCGTTGATTTAGAGCAACCAGGGAAAACAGTTCATTTCAATGCGGACGACAACATGAAAATATACGTTTGTCTAAGTTGcagtaaatatttcaaaagcgtcacatatttgtttatacattTAGTAAATCACAAACCAATCCAAACATTCACTTGTGATAAGTGTTACAAAGTATTCCAATTTAAAGCGCTTTTAAACAAACACCAAGAACGTTCGTGTATTCATGCGAAATTCATTAATATGAATGCAATcaataaaataccaaaaataaatatcacattTGAGCCCGGCCAAAATGCGTCGTGCGAACCAAAAATTAGCGCTATGTTTGACACCGATGTGAATATAGATCCAACTCCAAGTATACTAGAACAGGCATTGATAGCTAAACCAAAACTACCAGTAATAACAACGCAAATAGATAACAAAACTGGAATAAGTTACACGCATGATAGTaacatacaattttatacGTGTTCGATGTGCGATGCGAAAATCAAAACTTTATTCTCGTTGCGCAAACATTTACGACAACACCGCGATGGGAAACAATACTTTTGCGAGATTTGTCATCATGGTTTTAAATACGAGAAGAACTTGGACgagcataaaataaaacattgtgAATTTTTCGATAAGGCGCTAGCACCGTTGCGAAATAAACCGGGTGTTagagataattttatttgtgaaacgTGTGGTGTGATCATGAAAGACCGATGCAACTTTAACCAGCACGTTAAGCGGCACAGTAACGAACGGCCATTCGTGTGTGAAATTTGCGGCAAACGTTTCAAACTTGCGTCGTTATTAGGCAATCACAAACATTCGCATGAAATTGAATCGAGATACCAGTGTAGTATATGTCCATCTAAGTTTCGATACCGTGAAACGCTTCGCACGCATTTGCAACGTCACGCTGGTATCAAACCGTATAAGTGTGAAGTGTGCGGCAAGGCGTTTGTTCGGAAAGATAATATGCAGAAGCATCGCAACACACATTTAGATATCGATAGCTCGATTCTGAAATGTCCTATTTGTGGTGTTACTTATAAAACTTCGTATCGATTGAAGGCGCATATGTATGTGCATTCTTCGGTTAAAGAATTTAATTGTGAGGTCTGTAATCGAGGCTTTTTATATGAGCATACTTTGCGGTTTCATATGCGGAAGCATACTTCGGTTAAACCTTATAATTGCCATATTTGCGGTAAAGGATTTTTAGTTGAGCATAGATTAAAGCGCCATTTGAGACAACATGCGCGGAATAATGTGTTTTCCGAGACACAGTTTCTATCAAATAATGCACAATTAAAAGCGGATGAAACTGTATTAGACCATTCGGATACACCGTTACAGGAtgtcgattttaataaatcggATAAACGGTTAACACCAGATCTAACACATAACCGAAGTTTACCGATgattttttaa
Protein Sequence
MKDKESDDDISYYDMLLTSVPDLISDDDQLSTLICIECQEQLIDTYSLISKWQQSRKILNKYKKQMNFTFYTDKDEFTYSTATGYKNINDLITSVVSDDNVENDHTSGAPNSKDFIERVRTDTILPINSIEKKSTSLTNCDFSKVYEAIKANKRSTYTLVDLEQPGKTVHFNADDNMKIYVCLSCSKYFKSVTYLFIHLVNHKPIQTFTCDKCYKVFQFKALLNKHQERSCIHAKFINMNAINKIPKINITFEPGQNASCEPKISAMFDTDVNIDPTPSILEQALIAKPKLPVITTQIDNKTGISYTHDSNIQFYTCSMCDAKIKTLFSLRKHLRQHRDGKQYFCEICHHGFKYEKNLDEHKIKHCEFFDKALAPLRNKPGVRDNFICETCGVIMKDRCNFNQHVKRHSNERPFVCEICGKRFKLASLLGNHKHSHEIESRYQCSICPSKFRYRETLRTHLQRHAGIKPYKCEVCGKAFVRKDNMQKHRNTHLDIDSSILKCPICGVTYKTSYRLKAHMYVHSSVKEFNCEVCNRGFLYEHTLRFHMRKHTSVKPYNCHICGKGFLVEHRLKRHLRQHARNNVFSETQFLSNNAQLKADETVLDHSDTPLQDVDFNKSDKRLTPDLTHNRSLPMIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01039596;
90% Identity
iTF_01039596;
80% Identity
-