Nsal000243.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- YTHDC2
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000002.1:1039329-1048268[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00058 0.057 14.8 0.3 1 23 1664 1686 1664 1686 0.98 2 10 3.2e-05 0.0031 18.7 3.2 1 23 1692 1714 1692 1714 0.98 3 10 0.0015 0.14 13.5 0.1 2 23 1762 1783 1761 1783 0.96 4 10 0.063 6.2 8.4 1.4 1 23 1788 1812 1788 1812 0.97 5 10 0.00017 0.017 16.4 0.7 1 23 1818 1840 1818 1840 0.95 6 10 0.00046 0.045 15.1 0.8 1 23 1846 1868 1846 1869 0.96 7 10 0.00052 0.051 14.9 1.0 1 23 1874 1896 1874 1896 0.97 8 10 0.0047 0.46 11.9 1.6 1 23 1902 1924 1902 1924 0.97 9 10 0.0022 0.21 13.0 8.7 1 23 1930 1952 1930 1952 0.98 10 10 0.00026 0.025 15.9 0.1 1 23 1958 1983 1958 1983 0.96
Sequence Information
- Coding Sequence
- ATGGCTCCAAACAAATATACTATGAATATTATCGTATCGGAAGAATTCCGCGTACAATCCGAATTGATTTTACGTAATTTTATACATGATGAAGACGCCGCTGCACACGAGTTTCCAACTAGTTTAACAAACATTGAAAGAGCATGGTTACATAATTACGCTAAAACACTAGGCTTATCATCAAAATCATATGGCAAAGAGCCTAATCGAAGAATCACATTGTCCAAACCAAATGCAGATAGGGGATACCGCACTAGGATATCATTGTcgttttttaaagaaaacttcATGTTGATGCGCGAATTCTTCGCTCGGTACTCAAGGAAAGATCATAGAGACGACTCACGTTTGCGAATACGTTCGAAAAATAACTTAGATAACACTGACACTAATACTGGGCAGCTATCATTCGGCATTCCACAAATGCCGAATTTCTCCTTATGTAACGACTTGATTCCGTTCCGCATGGAGCTTCCAATATGGCCCATGCGGGAAGCTTTAATGGAAGCTATAGTATCCAATCAAGTAGTGATTGTTTGTGGAGAGACTGGATCTGGGAAGACTACTCAGATCCCGCAATTTATACTAGATTATAGCGCATCAGTTAAAGAGAAAACCCGCATTATTTGTACTCAACCTCGACGCATATCTGCAGTGGCAGTAGCTGAACGAGTTTCTGCGGAACGCGGTGAAAAGATTGGGCAAACAGTCGGATTTCATATTCGATTAGAATCATGCGTTGGACCAAAAACCATGTTGGTGTACTGCACTAATGGGATTTTATTGCGGACGCTGATGAATGGCGATGCATGTTTGAACGCGTTCACGCATATTATTGTGGATGAAATTCATGAACGGGATAGATTTAGCgactttttattaatatgtttgcGCGAGTGTCTAGTCAATTATCCTCATTTgagattaattttaatgtcgGCAACTATGGATGTGAATACATTCCAAacctattttaataatgcGCCCGTTATATTTATACCCGGACGACTGTATTCAGTGACTGAATATTTCATGgaggatattttaaaaaagacGAAATATGAGTCGCAAGCTATGGctaatttgaaaaagaaaaacgGTAAAACGATTCGTCCGCCTGCCGCACCACAAACTCCGATTATTCAGGAATATAACTTGGACGTCGACCTACAACTGGAGCTGATCGAATGCATTAACGAGTGCGTTCAATTTGGTTCTGAAGAATCATTCACGCAACTCCTACAGTTGATATTATCAGATCATGCGCCAGTTAATTTCCAGCATCCTGACACAATGATGACTGGTTTGATAGCCGCTGCAATGCACGGCAATATACCCATCTGCACCGAGTTACTAAATTTCGGAGCCGACGTCAAACTAACATCAAAAGACAAATTAACCGCCTCCGATTGGGCGCGGACAAACCAACACGTTGAAGTGGTAGAACTCTTAAAACACTACGAGCAATACACAGATAGTACCTCAAATCAGTGTTCAATTAGCGATGATGATAAAGAACTATTAGACTTATACCATAGCACGATCACAGACCAGATAATcgattttgatttattgttggtgttattgtttaatatacatattaaaaatgttcatgggagcatattgatttttttgcCCGGTTACGATGATATAATTACCGTGAGAGATCGCATTCAAAGTGATGCACGCTTTAACGGAAATGCCTATCAGATATTCATGTTGCATAGTCTAATGCAGATTAATGAACAACATGAAGTTTTTAATCAGCTATTGGGTAAAAGAAAGATTATTCTGTCGACGAATATTGCGGAAACTAGTATTACGATTGATGACGTCGTTTATGTTATCAATTCAGGGAAAGTAAAGGAAAAATGTTATGATTCTATAACTGGGATTTGTAGTTTGCAAAGCGCTTGGATTTCGCAAGCGTGCGCTAAGCAAAGAGCAGGTCGAGCTGGCCGTACTCAACCCGGTGTTTGCTTCCATATGTTTTCTAAATTTCGACATAATTCAATGCAAGAGTTCTCGACCCCTGAGATACTACGAATGCCTTTACATGAGTTGTGTCTGCAAACAAAAATGCTCGCACCTCGAGAGACGAAAATTGCGGATTTCTTATCGCGAGCCCTCGAGCCACCATCCAGTATGGCTGTGAATAATGCTATTAAGCATCTTCTGGAAATTGGCGCGCTCGACGAAAATGAAGACCTGACCCTATTAGGACAACATCTAGTTGATCTACCAGTCGAACCACGACTTGCCAAAATACTAATCTATTCTGTGATTTTTAAGTGTATTGACCCATTGCTTACCATTGTAGCCTTCCTCAGTTATAGgGATCCTTTTATTCTTCCGAGTATACCTCACCAAAAAAATGTAGCTATAAATATTCGGAAACAATTTTCCTCTGGGACATTTAGTGATCATATGATCTTATTACGTATTTTTCAAGCATGGCAGgACGCACGCTTATCGAAAGCAGAGCGTTTATTTTGTAGTAAATATTATGTGAGCTCAGCAACAATGGAAATGGTTGTGAATATTCGGTCGCAACTGTTGGCGCAATTGCGGGCGAGTGGTTTTGTTAAGACGAAACCACCTGGTGATATACGAGACTTGAACGAAAACGCAAACAATTGGGCTTTGATTAAAGGCATTTTAACGGCGGGATTTTATCCAAATATTGCTTTTGTTAATAAGCACAGTATGCAAATCCGTACAAAaaatgaaaaaaaagtgaTGCTTCACACTTCGTCTTCATTACGTGTGGGTGAACGTCACTCAAATAATCAAGATCACATCCAAAGCATAAAAACGCTTCCGACATCTTGGTTAACATACGAAGAGCTATCTCGCAATGGCAACACATACACCATACGCTCTGCGACAGCAATATCACCTCTTGTCGTTGCTCTATTTGTGGATCACGACACACCTGATGAACTCGGACCTCTTAGCTCGGATTCAGATGAAGAAGATACCAACATTGCATACGCTCTCAACAACTGGATCGTCTTTGAAAGTACTCCAGATGTAATACAAATGCTGAAAATGCTGCGGGACAAAATTAATGGCCTCATCGCGAAAAAGATATCGAACCCTTTCAAGACATATGGACAGCATGACGACGCGTTAGTCACCATGCTTGCAACTGTAATCCAGAACGAAGATGGCATGCTCGGATTATATCAGCCTCCCGGTATTGGACAACGTCCGAAAATTATGATGTCCAACAACTATCCATCAGGGTACAGTGCAGTGGGCCAAGCGAACCCGAAACCGCGTCAAGTCTCTAAGAAACAAGAGCGCATTGCTATGgaaattttgcaatttaagCGAGTCCACGTGAATCAATATAATAAGTTTTTGTCGAACGGGCCTCCTTGTTTACCCCCAATTGGTGCTCCAATTTTGAACTCACAAACACCTCAAAATAATCTATATAATTTGGATTATTTACCCCATTTCCCACAACCATCCTATTTGCAACCAGAATTAAATCAAATCAGTCAAAACTTCGAAGTTTTATCCCTGTATAATAATATGCCATGCAACAATTTTGTCCCTTATAACTATACAATAGATCCTAATATGTACCCACAACCTCCTTATGCCGAGTCAATATGGCAGGTACAAAGTGATTTCATCAATAATGGCGTCACTGTGGATATGGAGACCGGCGCTTGCGCATTAGATCCCCTCATCACACCTGAACCACAGAATGAATGCAACACGATACCGCAAGGATTATCATGGAATTTTCATTTACGAGATCCcgaaaatacattattttttatcatcaAAACGGGGAGTATCAAAGCGATTGATGTATCCATTAGTAAAAAAACGTGGATATTTTCGCCTCAAACCGAACGCAAAATTTTGCGCGAGTTCCAAACAGGGCAACCGATTATTTTAATCTTTACGGTCCAAATGTCGAATTTTTTCCATGGCATTGCTAGATTGATAAATGGACCATCCAAGGAGGTGTCgcattataatttgaattgtcCAATTGAGTGGTTGAGTCGCGCTGATATACCGTTTGAACAACTAAGaaCGGTATTATCTGATTTGTTAATATTGGGTGAACCGAAATCTTTAACTATTCAACAAGTGAAGAAAAAATGGGATAACTTGTGCTACAAatataaaaaagaaaaacaaataccGGCATCAACATGGCATCACTTTACAAAAATGAAcgatttttacaataatgacACAAACCCGTTCTTAAATGAAGatgttaataaatgttttttgtcTATGCCAGAATGCTATGAAGAGAGTGAACATTCTGGGGATGTTCAGAAAACTAGTGGAAAAAATCGAGAATATTCAGATCGATGGACCAAAGAAAGGACTTTTTTTCTGATTGAAAGGCGAAAAATGAGAAATGCCATGTTTGATGGTCGAGGAATGTCTCGCTCTGGTTGGGAATCAATATTAATGGATTTTCAAGAAGCGAATGGCCCTAGAGATATGACTGTGCATCAAATTAAGAAGAAATGGGAGAATTTGTGTACACGTtacaaaTTGATGAAATGCACTAAACCGAATTCAAATTGgatatattatgaaaaattgaACGAGTTCTTCAAACAAAAATCAGCTGATAAACAATCTGTAACTGGTAGTATTGaacatttgaatattaaacCAAGTATGGATTGGACCGATGATTGGCCGGTAGACGATAATTCCACTAGTGATAAATTATCGAAATGTCGATTGTGTCAAGAGAATAACAGTGATCACTCATTGACTGATAACAAAGAACTGTGTAGTCGTATTACTGCTTGTACATCCATCAAAGTGCATGAAGACAAGGAAAATCTACCGAAAGGTATATGCGATACATGCAAAATATCACTCGATAAATTCCACGATTTCTTAGTACAATGCCACACAGTTGACGAAGAACTTCGGGATAGGAATCCAGAGATAATTATCAAAAAAGAAACCGACAACGTTACGAGCGATCTATACGAATGTTGTGAATGCCCGGCATCTTTCACAACTATAGGATCCCTTGAAAGTCATTTAATCAGCCACAAAAAATCCTCCAGATTCCATTGTGAAATTTGCAGCACTACGTTCACGCGCCAATCAGCACTTTATTCACACATCAAACGCCATTTTGAAACGAACAATGTACCTGCTACGGAAATAACGAGTGAAACTGACGATTACACTATTGAAGATCAAATTGAAGACAAAAATTTTGCTAATATAGTTGGGAATAAAATTGCGCATACAAaagaaataaaaaatttaatccCATGTGAAGTTTGCTCCAAACTCTTCGAACAGGAAACTGAGCTACAGAAACATTTAGATACTCATTCGAGGACTATACATGAATGTCCACGAGAGGGTTGCGAAAAAACCTATTTGACCCTGACGTCCTTACGAAACCACGAACGGAAGCATTTAGGTTTACAATCGTTTCTATGCGTTATTTGtgGAAAAGGTTTCGTGACGAGAAACGCTTTAAAGCATCACGAGAAAATACATTCCGATTTAAAAGACTACATATGTGATATTTGCTCGAGTGGATTTTCAATAATGAGTAACTTAAAAGCGCATATAAGAAAGCACCATGAAGGACACCGGTTTTATTGTTCGCAATGCCCTAAAGAGTTCCTAACGAAATCAAGTTTACAACGACATGAACTTGTGCATACTGGtattaaagattttatttgtgaCACGTGTAGCTCGGcgttttacacaaataaagaACTCATAAAGCATAAACGATATCACGATGGAGTACGATTGTACCATTGTAAACAGTGTTTTAAAGCGTTTTATGAGAAACATCATCTTACCATTCATATCAGGACGCATACGGGAGAGCGGCCGTACGAATGTAAAGTTCCTGGTTGTGGAAAAGCATTTCGggaaagtaataaattagcGCGACATGCTAAAGTTATACATCGGATAATAAATGAACCacatatgaaataa
- Protein Sequence
- MAPNKYTMNIIVSEEFRVQSELILRNFIHDEDAAAHEFPTSLTNIERAWLHNYAKTLGLSSKSYGKEPNRRITLSKPNADRGYRTRISLSFFKENFMLMREFFARYSRKDHRDDSRLRIRSKNNLDNTDTNTGQLSFGIPQMPNFSLCNDLIPFRMELPIWPMREALMEAIVSNQVVIVCGETGSGKTTQIPQFILDYSASVKEKTRIICTQPRRISAVAVAERVSAERGEKIGQTVGFHIRLESCVGPKTMLVYCTNGILLRTLMNGDACLNAFTHIIVDEIHERDRFSDFLLICLRECLVNYPHLRLILMSATMDVNTFQTYFNNAPVIFIPGRLYSVTEYFMEDILKKTKYESQAMANLKKKNGKTIRPPAAPQTPIIQEYNLDVDLQLELIECINECVQFGSEESFTQLLQLILSDHAPVNFQHPDTMMTGLIAAAMHGNIPICTELLNFGADVKLTSKDKLTASDWARTNQHVEVVELLKHYEQYTDSTSNQCSISDDDKELLDLYHSTITDQIIDFDLLLVLLFNIHIKNVHGSILIFLPGYDDIITVRDRIQSDARFNGNAYQIFMLHSLMQINEQHEVFNQLLGKRKIILSTNIAETSITIDDVVYVINSGKVKEKCYDSITGICSLQSAWISQACAKQRAGRAGRTQPGVCFHMFSKFRHNSMQEFSTPEILRMPLHELCLQTKMLAPRETKIADFLSRALEPPSSMAVNNAIKHLLEIGALDENEDLTLLGQHLVDLPVEPRLAKILIYSVIFKCIDPLLTIVAFLSYRDPFILPSIPHQKNVAINIRKQFSSGTFSDHMILLRIFQAWQDARLSKAERLFCSKYYVSSATMEMVVNIRSQLLAQLRASGFVKTKPPGDIRDLNENANNWALIKGILTAGFYPNIAFVNKHSMQIRTKNEKKVMLHTSSSLRVGERHSNNQDHIQSIKTLPTSWLTYEELSRNGNTYTIRSATAISPLVVALFVDHDTPDELGPLSSDSDEEDTNIAYALNNWIVFESTPDVIQMLKMLRDKINGLIAKKISNPFKTYGQHDDALVTMLATVIQNEDGMLGLYQPPGIGQRPKIMMSNNYPSGYSAVGQANPKPRQVSKKQERIAMEILQFKRVHVNQYNKFLSNGPPCLPPIGAPILNSQTPQNNLYNLDYLPHFPQPSYLQPELNQISQNFEVLSLYNNMPCNNFVPYNYTIDPNMYPQPPYAESIWQVQSDFINNGVTVDMETGACALDPLITPEPQNECNTIPQGLSWNFHLRDPENTLFFIIKTGSIKAIDVSISKKTWIFSPQTERKILREFQTGQPIILIFTVQMSNFFHGIARLINGPSKEVSHYNLNCPIEWLSRADIPFEQLRTVLSDLLILGEPKSLTIQQVKKKWDNLCYKYKKEKQIPASTWHHFTKMNDFYNNDTNPFLNEDVNKCFLSMPECYEESEHSGDVQKTSGKNREYSDRWTKERTFFLIERRKMRNAMFDGRGMSRSGWESILMDFQEANGPRDMTVHQIKKKWENLCTRYKLMKCTKPNSNWIYYEKLNEFFKQKSADKQSVTGSIEHLNIKPSMDWTDDWPVDDNSTSDKLSKCRLCQENNSDHSLTDNKELCSRITACTSIKVHEDKENLPKGICDTCKISLDKFHDFLVQCHTVDEELRDRNPEIIIKKETDNVTSDLYECCECPASFTTIGSLESHLISHKKSSRFHCEICSTTFTRQSALYSHIKRHFETNNVPATEITSETDDYTIEDQIEDKNFANIVGNKIAHTKEIKNLIPCEVCSKLFEQETELQKHLDTHSRTIHECPREGCEKTYLTLTSLRNHERKHLGLQSFLCVICGKGFVTRNALKHHEKIHSDLKDYICDICSSGFSIMSNLKAHIRKHHEGHRFYCSQCPKEFLTKSSLQRHELVHTGIKDFICDTCSSAFYTNKELIKHKRYHDGVRLYHCKQCFKAFYEKHHLTIHIRTHTGERPYECKVPGCGKAFRESNKLARHAKVIHRIINEPHMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -