Nsal012279.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000110.1:31070-35840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0045 0.43 12.0 0.6 1 23 535 558 535 558 0.95 2 10 4.2e-05 0.0041 18.4 5.1 1 23 698 720 698 720 0.98 3 10 2.9e-05 0.0028 18.9 1.7 1 23 730 752 730 752 0.98 4 10 1.7e-05 0.0016 19.6 1.2 1 23 758 780 758 780 0.97 5 10 0.0015 0.14 13.5 0.1 3 23 787 807 786 807 0.97 6 10 0.00087 0.085 14.2 2.3 1 23 812 835 812 835 0.91 7 10 3.4e-07 3.3e-05 24.9 2.7 2 23 842 863 841 863 0.97 8 10 1.7e-06 0.00017 22.7 1.1 1 23 869 891 869 891 0.98 9 10 6.5e-06 0.00063 20.9 2.5 1 23 897 919 897 919 0.98 10 10 0.0057 0.56 11.6 4.4 1 23 925 948 925 948 0.96
Sequence Information
- Coding Sequence
- ATGTGTTTAGCagaaatgttattattatgtacTTCAGTACAGtataaaaaaaacagtCCACTGCCAGAACAAATCTGCAATGATTGTGTTACCGAGTTGAACCAATCCtataaatttgcaataaaatgtCGAGAATCAGAAGAAaagttaaagaaatatttactaaacaatttaaatctaGAATTAGATATCGTCAAACATGAGCATGACTACAATACTGGAACGCCACTCGATAATGAATTTCCAATTATTAAAGTACAATCTGACCTAAATGAGCTAACAAATCCATTATTGCCTAACCAATCGATTTTAGTTACAACTGAAAGCAAAAACGCTCTAAACCCACTACAGTTACCGACTGAGTCCCCAATTACCCAGATTACCGAATCATTGAATGGTCAATCAGTTACAGtaggaaatataattattaaatcagACACATATGCGGGAGAAAACGAAAACGATCGACAAAAtactcaaataataaataccaatCAAACAAACCCAATAGTCAATTCATCATCGAAACAAGCATTTATCCCAATACATCATTTACATCCAATCGCAAATTTAgagaaattaatttcaaatatattaccTGAAAATAATCTACCAAATTCTAATGAAACAGCTGATGTGGCTGTGATAGAACAGCATAACATTCCCCTCCaagaaaataatcaaaactatCAAACTGATACGACCTTAGAAGCATCGAATAATGTTTATGAGTTTCGGAAACGAGCTTCTcgcgtacatacatatattgaatCTGGCAATGAAGACAGTCAATCAAATGACGATTATTGTGATAGCGTGCTATCAAATTATGGAGATTTCGACAGTGATACATCAAATGAGGAAAACACGCAAagtggaaaaataaataaaaagcaatCATCCAAAAACGCAACTCTTAGTAAACAACTAAATACAGCAAATCCTCAAATTGAAATACCAATTGTTGTCAACCAACCCCTTGCACAGCCAGTACGCGTTCAAATTGAGCAACCAAGAAACCAAATTGTTAGCAACGAAACGTCTGCGACAAAGGATGGTTTCATAAACCATACAGTGTCGCATAGTGAAGCATCGAATAACGTTTATAAGTTTAGGAAACGAGCTCCTCGCCTACAAACATATATTGAATCTGGCGATGAAAACAGTCAATCAAATGACGATTATTGTGATAGCATGCTATCAAATTATGAAGATGACAGTGATACATCAAATGACGAAAACACACAAagtggaaaaataaataaaatacaatcatCCAAAAACGCACCTCTTAGTCAACAACTAAGTACAACAAATCCTCAAATAGAAATACCAATTGTTGTCAACCAACCCTTTGCACAGCCTGTAAACTATCAAATTGAACAACCAAGAAACCAAATTGTTTTGCGTAACATTAACTATCAAGGTGTGAGTTCCAGTTTGGTAAACAATCAAAGTGAGATATCAACTGTAGTTGCCAATAGAGCAGGAGTAGCAACAAATTGTGGAAGTATAACGAATGTTGATACTCTGCCCGAAAAAACAGTTAAAACAGcTTGTAAATGCAATATGTGCCTTAAAAGTTGCAAACAACTGGAGACATATCCATGCTTAATTTGTGGAGATAAATTCAGTTTAGAAGACTCTCTAAAGAAGCATATTATTCATAAACATACCAACAAACGACCACACAAGTACACTGTTAGCAACGAAGCGTCTGCGATAAAGGATAGTTTCATAAACCATACAGTGTCGCATAGTGAAGTAATACAGAAACCGTATACGATTAGCGCTAGTGATTACGCAACAAAAAATATGGTAGCTATGCCAATACTTCAACAGGTTTTAGAGAATTATTTACCACAACAAAATAACGCATCACATATAAGTGACCAAGCAAGTATTATAAATCATCAAGCTAAACCAGCGAATATTCCAAGTGAGCAATtgattattacaaatttaaataaagaaatcgATGAAGAAGTAAGTATATGCGAGTTTTGTGGAGGCACTCTAGAGAAAAACGGATCATGTAGAAAGTGTGATCAAGAAATAGCATTACGAGCGAAAAATGCCGAGATGAAATGCCACAAATGCGAATTGTGTAATcgtgaatttaaatatttgcgctATTTAACGAAACATATGAGAAGCCATACTACGAAAGAAAAACGAGAAAAGCAGCACTCTTGTAACATTTGCGCGAGAACATTCTCAACAAAAGGCTATTTGCTTGTTCACGAACGCACTCATACAATGGAAACGCCATATTCATGCGACATTTGCAATAAGTCCTTCTCAAGTACAGCGAAATTGAACACACATAAGTCTGTACATTCGGGTGGAGGCGAAATATGTTTCGTGTGCGGCAAAATATTGATAAGCATACCTagtttgaataaacatatgcagacaCATAGCAGCAAACTTTTTCCATGTGAAAAATGCGATAAAGTGTGTAGTTCATCGAGAAGCTTGTACAAACATAACGCTATCAAACACTCTACTGCCCCACCACTTACGTGTGATATATGTGGTAAGACATTTCGGATCAAagatcatttaaaaaaacatatgaGTACACATGATGATTCAAAGCCTTTTTCTTGTACAATTTGCGGCAAATCGGTTCGTAGTAAGCAATTTTTAGCGCAACATATGCGCACGCATACCAACGAACGTCCGCATGTATGTACGATCTGTGAAAAACGTTTTAAGAGCGCCGCCAATTTGTTTCTTCATAAGCGGACGCACGACGATAAAAGACCTTACGCCTGTACACTCTGTGATTTCAAGTTTAAAATTCGACACCATTTAAATGCTCATTTAGAGAGGAAACACCCCCCTCCAAAACCGAGTGAATTATGA
- Protein Sequence
- MCLAEMLLLCTSVQYKKNSPLPEQICNDCVTELNQSYKFAIKCRESEEKLKKYLLNNLNLELDIVKHEHDYNTGTPLDNEFPIIKVQSDLNELTNPLLPNQSILVTTESKNALNPLQLPTESPITQITESLNGQSVTVGNIIIKSDTYAGENENDRQNTQIINTNQTNPIVNSSSKQAFIPIHHLHPIANLEKLISNILPENNLPNSNETADVAVIEQHNIPLQENNQNYQTDTTLEASNNVYEFRKRASRVHTYIESGNEDSQSNDDYCDSVLSNYGDFDSDTSNEENTQSGKINKKQSSKNATLSKQLNTANPQIEIPIVVNQPLAQPVRVQIEQPRNQIVSNETSATKDGFINHTVSHSEASNNVYKFRKRAPRLQTYIESGDENSQSNDDYCDSMLSNYEDDSDTSNDENTQSGKINKIQSSKNAPLSQQLSTTNPQIEIPIVVNQPFAQPVNYQIEQPRNQIVLRNINYQGVSSSLVNNQSEISTVVANRAGVATNCGSITNVDTLPEKTVKTACKCNMCLKSCKQLETYPCLICGDKFSLEDSLKKHIIHKHTNKRPHKYTVSNEASAIKDSFINHTVSHSEVIQKPYTISASDYATKNMVAMPILQQVLENYLPQQNNASHISDQASIINHQAKPANIPSEQLIITNLNKEIDEEVSICEFCGGTLEKNGSCRKCDQEIALRAKNAEMKCHKCELCNREFKYLRYLTKHMRSHTTKEKREKQHSCNICARTFSTKGYLLVHERTHTMETPYSCDICNKSFSSTAKLNTHKSVHSGGGEICFVCGKILISIPSLNKHMQTHSSKLFPCEKCDKVCSSSRSLYKHNAIKHSTAPPLTCDICGKTFRIKDHLKKHMSTHDDSKPFSCTICGKSVRSKQFLAQHMRTHTNERPHVCTICEKRFKSAANLFLHKRTHDDKRPYACTLCDFKFKIRHHLNAHLERKHPPPKPSEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -