Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000037.1:2389036-2391462[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.69 67 5.1 2.8 1 23 341 363 341 363 0.96

2 12 0.0026 0.26 12.7 3.4 1 20 397 416 397 419 0.96

3 12 0.00013 0.013 16.8 0.9 1 23 425 447 425 447 0.96

4 12 0.0071 0.69 11.3 2.6 1 23 453 476 453 476 0.93

5 12 0.00021 0.021 16.1 1.0 1 23 482 504 482 504 0.98

6 12 0.19 19 6.8 1.0 2 23 511 533 511 533 0.91

7 12 0.0022 0.21 13.0 0.1 3 21 600 618 599 619 0.94

8 12 2.7e-06 0.00026 22.1 0.4 2 23 673 694 672 694 0.97

9 12 0.00067 0.065 14.6 3.4 1 23 699 721 699 721 0.98

10 12 9.5e-06 0.00092 20.4 3.2 1 23 727 749 727 749 0.98

11 12 1.1e-06 0.00011 23.3 0.4 1 23 755 777 755 777 0.99

12 12 0.00014 0.013 16.7 5.9 1 23 783 806 783 806 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.69	67	5.1	2.8	1	23	341	363	341	363	0.96
2	12	0.0026	0.26	12.7	3.4	1	20	397	416	397	419	0.96
3	12	0.00013	0.013	16.8	0.9	1	23	425	447	425	447	0.96
4	12	0.0071	0.69	11.3	2.6	1	23	453	476	453	476	0.93
5	12	0.00021	0.021	16.1	1.0	1	23	482	504	482	504	0.98
6	12	0.19	19	6.8	1.0	2	23	511	533	511	533	0.91
7	12	0.0022	0.21	13.0	0.1	3	21	600	618	599	619	0.94
8	12	2.7e-06	0.00026	22.1	0.4	2	23	673	694	672	694	0.97
9	12	0.00067	0.065	14.6	3.4	1	23	699	721	699	721	0.98
10	12	9.5e-06	0.00092	20.4	3.2	1	23	727	749	727	749	0.98
11	12	1.1e-06	0.00011	23.3	0.4	1	23	755	777	755	777	0.99
12	12	0.00014	0.013	16.7	5.9	1	23	783	806	783	806	0.98

Sequence Information

Coding Sequence: ATGCCCACATGGGGCCAGCATCACTTACAGTCCAGCAATATCTTCAAACAGTACTTCAAATACACCCAACAGTTTACGCCACTAAAAGTATTAAACCTACAACTTACAATTAGTGAAATGAGACAACCACCACTAGTGCCCACAACAAACAATACCCAACCAATTCATAGTGAAATGCCGACTACTCAAGCTCCAAGTGACTTAACACGCCTAAAACGCCTCAGTGCCTCAGAAATGGATTCAATCGAACCGAAACTATACTCAGACGAATCCAATCAATTCGAGAACGCCTCAAGTGTGCCTCAAAACTCAAACAATTTTGAGTCGATTTACCCAGACCGTCCAGCTACGTATACATCTCTTTTGAATTTAACCGACGATGAATTATTATCGAACACGTTTTTGAAAACCATCTTAGGGGAGTACTCAAAACAATTCGATTTCGAGTCCATTGGGGATGAAGTACTTACTATTTTAGAAAACGATCAAAATGATATATTCGGCACTAATGACTTGAATATATTTGAGAGCTCAATTGAAACACCAACTTACTTAAATCCCAATCATATATCTCCAATATTTTCAGAGATTAATTCAATCGATTATATTAATACTGAAATAACAACGTATAATAATGAACTTAATTCAGATATGAATTTCACTTCATTTCCCAATTACTTTAAAACAACTGAATCAACAATTACAACGAATACGttcactaataaatatttaaatgatataaattgtGCGAACCCATCCACATTAGACTTAACACCTATAACGCCATTCCCAGTGGATATGTCTGCAGAAGCACTTGAAGTTAGTAACAATGagggaaatatgaatttaaatgaaaaagaGAGTGAGATGAGTGAAGTGCGTTACTCTAAACGCGATACGTTTTGTAGGGTGTTAACGGATATTGAATCGGCGTCTAGGCACACaaaaacgcaaatacaatTCACTGTTAATTCGAAAAACCAATCAATCACTTACGCCATCGATAAAACGTCGCTCATATACGAGTGCAAATACTGTGAAATTCGCTATAGATGCTTAACGGATTTATTAATGCATGGTAAAAAGCATAAAATGAATTCAGATTtcagtgaaaataaatacctaGCCCCGGATCCCAAATCGCCGGGACAATTCGTCACTTTTATAGTGAACCACAAACTGAAATTCTACAAGTGTAAAGTCTGCACGAAACAATTCAGCGATGGTAAATCACTGTATCGCCATATAGCGTGCCATGTTTCCGATAAGAGTTTCGATTGTGATATTTGCGGGAAAACATTTAGAATAAGTCGTTACCTTTCCATACACAAAAACAACCATAAAAAACAACGTTTGTTCAAGTGCACCGCatgtaataaatcatttaaagcTAAAGAAACTTTACATATACATGAATTGCAATACCATCAAGATTTGAAGCCGTTTTCTTGTGATATTTGCGGGAAAAAATTCGCAGTCGTTCAGTATTTTCGCGTTCACACGAAACGACATGCTAAAGAAGCTGGTAGGGTTTGTTATATTTGCGGCAAAGTATTAAAAAACGAGGCGCTATGctttaaacatattaatgaTAAACATAACGGCTCACACTGTGAAGTTCGTAAAGATGTTAAAGACAATCAATATGAAATGTGTAACAAATCACAAGATGTCTATAAAGCGCCTAAGGACGTCTATACTGATATAGAAGTTGGTAGCAAAGCTCAATGCGTCGCTAAAAGTTCCTTAAAGTTTGAACATGAGGATGTAGAaagtaatatgaaattaaaaaaattgtgtgaTTTATGTGGTCAATCATTCCCAACGTCACGCCTATTAAAGTTGCATGTGCTTAAAAAATGCTCTAAGCCTATTCAGAAGATGAGCGAAATATTTCCAGCTTCGCGAGAATTAACGGACAACCAAATCCATGAATGTGAAGTTTGTTGTAAAATAGTTTCGAGTAATGTGAAGCAAAACCGTTGTAAATGGAATGGTAAACATTGCCAAAAGAATCAATGTGAAGTATGCGGCAAATCGTTTCCTGCCTCACGCAACTTACAATCGCACATGAAGTTACACGGTGACAAACAATTCAAATGCGACTACTGCAATAAGGAGTTTTGTTACAAACGAGTGTTGAGCGACCATTTATTGATTCACACTGGGGAAAAGCCGCATGAGTGTAACTATTGCGGAAAGAAATTCCGTATGTTGGGCACTTTATATAAACACGTCCGCACACACACTGGCGAAAAACCGTTCAAGTGTGAAGTGTGCAAAAGGGGCTTCGCGCAAATGTCCAGTTTGCAAGTACATATGAGGATTCACACCGGCGAAAAACCATTCAAATGCAACAATTGCGGGAAGAGTTACGCGCAAAGCTACACATATCAACAGCATACGAAAAAATGCCATATAActtag
Protein Sequence: MPTWGQHHLQSSNIFKQYFKYTQQFTPLKVLNLQLTISEMRQPPLVPTTNNTQPIHSEMPTTQAPSDLTRLKRLSASEMDSIEPKLYSDESNQFENASSVPQNSNNFESIYPDRPATYTSLLNLTDDELLSNTFLKTILGEYSKQFDFESIGDEVLTILENDQNDIFGTNDLNIFESSIETPTYLNPNHISPIFSEINSIDYINTEITTYNNELNSDMNFTSFPNYFKTTESTITTNTFTNKYLNDINCANPSTLDLTPITPFPVDMSAEALEVSNNEGNMNLNEKESEMSEVRYSKRDTFCRVLTDIESASRHTKTQIQFTVNSKNQSITYAIDKTSLIYECKYCEIRYRCLTDLLMHGKKHKMNSDFSENKYLAPDPKSPGQFVTFIVNHKLKFYKCKVCTKQFSDGKSLYRHIACHVSDKSFDCDICGKTFRISRYLSIHKNNHKKQRLFKCTACNKSFKAKETLHIHELQYHQDLKPFSCDICGKKFAVVQYFRVHTKRHAKEAGRVCYICGKVLKNEALCFKHINDKHNGSHCEVRKDVKDNQYEMCNKSQDVYKAPKDVYTDIEVGSKAQCVAKSSLKFEHEDVESNMKLKKLCDLCGQSFPTSRLLKLHVLKKCSKPIQKMSEIFPASRELTDNQIHECEVCCKIVSSNVKQNRCKWNGKHCQKNQCEVCGKSFPASRNLQSHMKLHGDKQFKCDYCNKEFCYKRVLSDHLLIHTGEKPHECNYCGKKFRMLGTLYKHVRTHTGEKPFKCEVCKRGFAQMSSLQVHMRIHTGEKPFKCNNCGKSYAQSYTYQQHTKKCHIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039567;
90% Identity: iTF_01039567;
80% Identity: -