Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000029.1:1133123-1148856[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 6.7e-06 0.00065 20.9 2.4 1 23 465 487 465 487 0.98

2 7 1.2e-06 0.00011 23.3 0.2 2 23 496 517 496 517 0.98

3 7 2.9e-05 0.0029 18.9 0.9 3 23 525 545 523 545 0.98

4 7 2.4e-07 2.4e-05 25.4 1.6 1 23 551 573 551 573 0.98

5 7 2.5e-07 2.4e-05 25.4 0.2 1 23 579 601 579 601 0.98

6 7 5.9e-06 0.00057 21.0 6.3 1 23 607 629 607 629 0.97

7 7 9.7e-06 0.00094 20.4 1.3 1 21 635 655 635 656 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	6.7e-06	0.00065	20.9	2.4	1	23	465	487	465	487	0.98
2	7	1.2e-06	0.00011	23.3	0.2	2	23	496	517	496	517	0.98
3	7	2.9e-05	0.0029	18.9	0.9	3	23	525	545	523	545	0.98
4	7	2.4e-07	2.4e-05	25.4	1.6	1	23	551	573	551	573	0.98
5	7	2.5e-07	2.4e-05	25.4	0.2	1	23	579	601	579	601	0.98
6	7	5.9e-06	0.00057	21.0	6.3	1	23	607	629	607	629	0.97
7	7	9.7e-06	0.00094	20.4	1.3	1	21	635	655	635	656	0.95

Sequence Information

Coding Sequence: ATGCAAGAAGTAATCCGTGATGGTGCGCTACGTCTGATGACATCAGAAGCAACATGCGATGTCATACTCAACTGTCAGGGACACCGGTTGATGGCCCACAAAGTCATGCTATCCATAGCAAGTCCTTTACTACAAGAACTACTATTGGCTAACCAGTGTGAAACTAGTTTAGTGGTCCTTCCCGACATCAGTGCCACAACAATGACGTACATTTTAGACTATATTTACACAGGTAGTGTAATACTACACGCAACAGTGTTAAATGAATTTCTCTGCGTAGCAAATTTACTTAAACTAAAAATCGAACAAAATTCATCGACATACACCTCAATAGAACATCAAAATGAAACcagtaaatatttcaataaatattactcaCAGCCCACGAATCTAATTTACCCGAAAGAAATCTTAAATTGTGCGTATAAAAACAGTGAATGTGGACCGGAATGCTATAAACTACCACCAGTATATCAAAGTTTTAAATCATCCGGTGatgaaaaagaatttaaattagcGGAGAAGCGATTGAAATTTTCGCCGATTATTTTACAAGATGAGCGCAGTGCGAATTTTGGTTGTAACCAAGAGTTTAATGATGATAAACTGGGTTTAAATATGGTGAAAACTAGTGAGTTAATTCAGGAACAAAGTCATGTAGTTAATTTAGAAGTGAACGGTGCGAAACGTAGAACAGTGCGAAAAATACCGAATTTAATGCCGATATCGCGGTGTCAGTTCAGTGCGTTTAAAGCCAGGAAGGGGTTGTATAACCGCGTGTTTCCGAGTCCTTGGTGTCCTAGGATTATTCCTGTTACTGTGGATCCAAGGAATGAATGTGTTCGAAGCCAACTACCTCTAATGgtcCCAAACGGTACATTCCAAAATATTGACAACAACAAAGAGAGCTCAGAATACTCCGAAGATCAAAACGATAAAAACAACAACTTAAAAAGAATTCCCCTTGTCCCACTTAACCCGTTACATCCAGAACCTCCTCCAATAGACAAAACTCTGCTACCATTCAGAACATCACCAACAGTATTAAacttaaacatatataaagaTTGCTTAAATTATGAATGTCAAAAAATTGATACAAATCATAAAATCAGCATCGATACAAGATATGATAATATTTACGAAGAGAAACAAATCGATAGTGATATCcaagatttaaaaacaataccGAGCAGTGATTATCAAAATGTACCGATAGTATATCCGGTAAAGACACCGGTGTCTGAATGTTCTGGTACAGATTCATCGAATTCTAATTGTAGTGTTGGTGAAGTGAAAAGTGGCGGTGAAGAATTCATAAAAGTCGATGTGAGAAGCGATGAGGATAACGGGAAAGAGGATGCTGAAATGTCTGATCTAAAGCAGAAGCCATATAAATGCGAGGATTGCGGAAAACAGTTTAGCCAACTAAGGAACTATAAATATCACAGGTCGGTGCATGAAGGTACGAAGGAGTTCGCGGCACGCTGCCCCGAGTGCGGCAAGGTATTCAATGACCGCGGCTATCTAAGTAGCCACCTGAAAATCCACCGAGATCGAAAAGAATACGGATGTCCGCATTGCCCGAAACGGTTCAACCAGCGCGTCGCTTATAACATGCATCTCCGCATCCACACagGTGTCAAGCCGCATGTATGCCCCACCTGTGGTAAAGGATTCTCGCGAAAAATGCTCTTGAAACAACACCAAAGGGTTCATACCGGAGAAAGGCCGTACCAATGTCCAGAATGCGGGAAAAGTTTTGCCGATAGGAGTAATATGAGTCTGCATGCTAGACTTCATACAGGTGTGAAACCGTACGCGTGCAACTTATGTCCGAAAAGTTTTACGAAGAAGCACCATTTGAAAACCCATATGAATTACCATACCGGCCTGAAGCCATACGTTTGCCAAAAATGTGGACTTACATTTTCACAAAGCAGCAACATGAGAACACATTACAAGAAGTGTATACAGAAAGATTCACCAGATACCAATATACCGTAg
Protein Sequence: MQEVIRDGALRLMTSEATCDVILNCQGHRLMAHKVMLSIASPLLQELLLANQCETSLVVLPDISATTMTYILDYIYTGSVILHATVLNEFLCVANLLKLKIEQNSSTYTSIEHQNETSKYFNKYYSQPTNLIYPKEILNCAYKNSECGPECYKLPPVYQSFKSSGDEKEFKLAEKRLKFSPIILQDERSANFGCNQEFNDDKLGLNMVKTSELIQEQSHVVNLEVNGAKRRTVRKIPNLMPISRCQFSAFKARKGLYNRVFPSPWCPRIIPVTVDPRNECVRSQLPLMVPNGTFQNIDNNKESSEYSEDQNDKNNNLKRIPLVPLNPLHPEPPPIDKTLLPFRTSPTVLNLNIYKDCLNYECQKIDTNHKISIDTRYDNIYEEKQIDSDIQDLKTIPSSDYQNVPIVYPVKTPVSECSGTDSSNSNCSVGEVKSGGEEFIKVDVRSDEDNGKEDAEMSDLKQKPYKCEDCGKQFSQLRNYKYHRSVHEGTKEFAARCPECGKVFNDRGYLSSHLKIHRDRKEYGCPHCPKRFNQRVAYNMHLRIHTGVKPHVCPTCGKGFSRKMLLKQHQRVHTGERPYQCPECGKSFADRSNMSLHARLHTGVKPYACNLCPKSFTKKHHLKTHMNYHTGLKPYVCQKCGLTFSQSSNMRTHYKKCIQKDSPDTNIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00873405;
90% Identity: iTF_01039543; iTF_01041052; iTF_01039422; iTF_01040313; iTF_01040269;
80% Identity: iTF_01041052;