Nsal002067.2
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000013.1:135254-138224[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00091 0.088 14.2 4.0 2 23 297 319 296 319 0.91 2 14 6.3e-05 0.0062 17.8 0.5 3 20 337 354 336 357 0.91 3 14 0.19 19 6.8 0.4 3 22 362 381 361 381 0.94 4 14 0.028 2.7 9.5 6.6 2 23 387 409 386 409 0.93 5 14 0.00013 0.013 16.8 3.5 1 23 431 454 431 454 0.95 6 14 0.28 27 6.3 0.1 2 23 468 490 467 490 0.93 7 14 1.2 1.2e+02 4.3 0.7 5 23 581 599 580 599 0.89 8 14 3.7e-05 0.0036 18.5 3.1 1 23 604 626 604 626 0.98 9 14 9.1e-05 0.0089 17.3 0.2 1 23 631 653 631 653 0.97 10 14 0.041 4 9.0 4.2 1 23 665 687 665 687 0.98 11 14 0.0015 0.15 13.4 3.2 1 21 692 712 692 713 0.95 12 14 4.6e-05 0.0044 18.2 0.6 1 23 745 767 745 767 0.98 13 14 4.7e-05 0.0045 18.2 0.4 2 23 771 792 770 792 0.97 14 14 9.3e-07 9e-05 23.6 2.2 1 23 797 819 797 819 0.97
Sequence Information
- Coding Sequence
- ATGAAGTCGTTATACGAGAAAACTACAACAGGACTGAGTCTCGCGGAAATGCTTACGTCCTGCACTACTGTTGAGTGTAATGGAAACGATGGCCTACCGACTCAAATCTGCAGTGACTGCGTTTCGCAAATAAAACGCTATTACAATTTCGCGGCACAATGTCGCGAAGTGGATGACAAACTACAGGAACATTTACGGTATCTTAATAAACCTGAACTTAAAATCAATGTAGACGCGTCCAACATACAAGCAACTAACGAAATTAGTATTACACCAAAAAATAGTCAGTATGCCGAAAATATTCCCAATATAGATTCAACGACGAACGACATCAATGACTATCTAAGTTTCGaattggatatttttaaaagtgaaCTTAATCACGATTTCGTTAAAACTGAAATCGATTATAGGAATCTTGTTGATTTGGCGGGAAATATTAATGATTCGCTCATATCAGATGAAATTAATGCCACGTCTCTTGTGGGTGTATTGCCTACTAGTAATATACAATATGACAATAATGATTTAGTACCAAATAGAGCTGAGCAAATGTCTCCAAGTTTAGTAGAAAATAACCATAATATAGATACGTGGTGgataaaacaagaaataattgacgattctaaatcaataaataatagtatgGATCTAAGCAATTTGAAACTTaaaattgaaactaaaatatataattcaattatagAACCTATGGATTTGGTATCTCCAGTTTGTGATGATAATCAAGAAAATGAATCGCAATTATTAACGAGTCAAAATCACCAATCTGAAAGTGTCACTCATCCAAATATACCTAGCAATTTTAATAACTCTGTTGTAGTATTAGAACGACTCGATCTAAATTCATTAAGGCGTTCACAACACAAACTCCAGTGTAAGTTTTGCGAGAAACATTTTAGCAGAAAAGGAAATCTAACTGGTCATTATTACCAAAAACATCGTGGGGAATATCTAGACAAAGTTCACTGTAAGCAAAACAAACTAAACTCGTGCGGAATTTGTGATAAAGTTTTTAAATCTACATCGGATTTAATGCGCCACTATCCCAAACACAGTAAAGCGTTTTGTGTCTTTTGCGGACTAATCTTTACCGAGAAAAAAGACTTCAGTTTGCACTGGCGCAAGTGTAGATTTCAATTGCGTTGTAAGTGTTGTGGGAAATGCTTCGATGATAATTTCAGTTTACGAATGCATATAAACCACGCTCATCCGATAGGTGAACGCAATGAAAATATCGTTGACACAAATGCGATGACGTCACACGACGTATTGCATAGCTGCACGATTTGTGagaaaacatacaaaaatatccACGATTTAAACCAGCATATGCAGCAAATACATATAAAGCAGAAACCACAATTACAATCACGCAAAACATTATCTTGTCGAGTTTGCGTAGAGCTTTTTGATAATGAACAATTGTTAATGAAACATTTACAAGAAATCCACACGGATGTACTCGCAAACGAGCAAAGCAACTCTCAAAACCTAAATATGGAAACTGCGCCGATGATTGAAGTTAATTCGTCCACATTTGGAAATCAAAGttataaatttcgtaaacGAGTTCCTCGACAACAATCATACCATGAATTATCGGATGTAGATTCAGAATCAACTAGTGAGTACGAGTATGTATCTAATGATAAAGAAACCATCATTGCTCCACTAGTACCAACTAATATCCAATTAAATCCTACTAATGAGATATCAAGTACCAAATGTAATAATTTGGTAAAATCGCCTAGTGATTTATTAGCGCATCATAAAAAGCATTTgcgaaaacaattttcttgtaGTCATTGCGGCAAAAGCTTCGCACGCAGAAATGGTTTAACATTCCACATGAGGTTACACTCAAATAGGCTCTATTCTTGCACTCTATGCCCTAGATCGTTTATAACTGAATATAATTTAGGCTTACATTTAAAAGCTCATGCCAGAAGGAATATTTTACACAATCAACAAACATTTCAATGTTCATTGTGTGGCAATAGGTATAATTTTCACAAATCATATCTGAACCACTTGCGGTTACACACAAAAGCAAAGTATCACTGCAAAATATGCTATAAATCGTTCATGCATTTGAAAACATTACGGGCccatttaatgaaaaaatgttGCAAACCGATTATTGATAATAACGAAACACTGCAATCAGACAATATTAAATCGTCAACTAAATTAGATATAACGAGCATAAAACGTTACGAGTGCGAAGTGTGTAATTATCAATTTAGTCGAATCGTTGATTTCAAAAATCATATGAAAGCGCACAAATCATTAACGTGTTCATTTTGCGAGAAAATGTTCGATACACTGGCAAACTTAGATATGCATATGCGTATACATGAAAAGCGCCGATTCGCGTGTTCAATATGTGGTAAAACATACGTACAAAAACAGCATTTAAAACGACATCAATCGGTGCACGACATTGCAAAACATACGTGA
- Protein Sequence
- MKSLYEKTTTGLSLAEMLTSCTTVECNGNDGLPTQICSDCVSQIKRYYNFAAQCREVDDKLQEHLRYLNKPELKINVDASNIQATNEISITPKNSQYAENIPNIDSTTNDINDYLSFELDIFKSELNHDFVKTEIDYRNLVDLAGNINDSLISDEINATSLVGVLPTSNIQYDNNDLVPNRAEQMSPSLVENNHNIDTWWIKQEIIDDSKSINNSMDLSNLKLKIETKIYNSIIEPMDLVSPVCDDNQENESQLLTSQNHQSESVTHPNIPSNFNNSVVVLERLDLNSLRRSQHKLQCKFCEKHFSRKGNLTGHYYQKHRGEYLDKVHCKQNKLNSCGICDKVFKSTSDLMRHYPKHSKAFCVFCGLIFTEKKDFSLHWRKCRFQLRCKCCGKCFDDNFSLRMHINHAHPIGERNENIVDTNAMTSHDVLHSCTICEKTYKNIHDLNQHMQQIHIKQKPQLQSRKTLSCRVCVELFDNEQLLMKHLQEIHTDVLANEQSNSQNLNMETAPMIEVNSSTFGNQSYKFRKRVPRQQSYHELSDVDSESTSEYEYVSNDKETIIAPLVPTNIQLNPTNEISSTKCNNLVKSPSDLLAHHKKHLRKQFSCSHCGKSFARRNGLTFHMRLHSNRLYSCTLCPRSFITEYNLGLHLKAHARRNILHNQQTFQCSLCGNRYNFHKSYLNHLRLHTKAKYHCKICYKSFMHLKTLRAHLMKKCCKPIIDNNETLQSDNIKSSTKLDITSIKRYECEVCNYQFSRIVDFKNHMKAHKSLTCSFCEKMFDTLANLDMHMRIHEKRRFACSICGKTYVQKQHLKRHQSVHDIAKHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039643;
- 90% Identity
- -
- 80% Identity
- -