Nsal017102.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000209.1:240281-241992[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1e-05 0.00097 20.3 1.4 1 23 188 210 188 210 0.96 2 13 7.4e-06 0.00072 20.7 1.5 1 23 217 239 217 239 0.98 3 13 2.6e-06 0.00025 22.2 1.8 1 23 244 266 244 266 0.98 4 13 9.4e-05 0.0091 17.3 3.5 2 23 271 293 270 293 0.94 5 13 0.021 2 9.9 0.1 1 23 296 318 296 319 0.93 6 13 0.00099 0.096 14.0 0.0 1 23 324 346 324 346 0.98 7 13 3.6e-07 3.5e-05 24.9 1.4 1 23 352 374 352 374 0.98 8 13 0.00037 0.036 15.4 0.3 2 23 381 402 380 402 0.96 9 13 0.38 37 5.9 2.7 1 23 408 430 408 430 0.96 10 13 0.00015 0.015 16.6 6.4 1 23 435 457 435 457 0.98 11 13 0.00097 0.094 14.1 1.3 1 23 463 485 463 485 0.98 12 13 0.12 11 7.5 1.7 1 23 491 513 491 513 0.93 13 13 0.68 66 5.1 0.1 1 11 519 529 519 533 0.78
Sequence Information
- Coding Sequence
- ATGGATAAATCTGTGATACATATAGATAATCTCGTCCGagaaaatacacaaatattacgCGACTTAGACGAACTAGGAACGCCGAAAATCGGTAAAATAACGGATGAAACATTCGAAGTCTGTCGAACTTGTTTAGCAACCACTAATTTGGAATCATTATACGATATTACACAGCGTCTAGATGAGATGTTAATGATATGCGCGTCAAtaaagTGCTCGATTAGTGATGGTTTACcgattaaaatatgtacggattgCATTGATGAAGTGCAACgttcatacaaattcgttATAAAATGCCGGGAAATCGATACGAAATTGCGtgaatgttataaaaaaatcgcAATCGAAAACGCGCCCGAAatcaaaaaagaaataaatccTGAATTAGTATTAATTAAACCTACTAACTCAAACCATGAATTGAGTGATATAGCACTAAAAGACCCATTGGAAATATACCAAGAACCCGATTTGGACATCGTCAAACACGAATTCACCGAAATTAAACAAGAAATCACAACCGAACAAATACCCTTAACCCAACACACACAAAAAGATTACCAGTGTAATATATGCCACAAAATATTCGTCACAATCGCTTCGCTTCGACGCCACTTATTCGAGCATACCAAACGCCACATAACCTACCCATGTCGCGTTTGTGCCAAATCATTCCGCTATAATTACGCGTTAAAAGCTCATATGTGTGTGCATAACGCGCAAAAATTCACGTGCACTGTTTGCGGTAAAATATTCGCGCACGAATGTAATTTAACCGCGCACTTAGCAACGCACGGCACTTTATTGTCGTGCACGATTTGTCGCTGTAGTTTCCGCAAAGAGCGCAACTTGCAACGGCATATGAAAGCGCTCCATGAAGTGTTTGATTGTGAAGTGTGTGGGTGGGCGTTTCTAGAGAAAGACTTGCTACTAGAGCATGTGACGTCACACCACACGAAACACTCGTATATATGCGCGATTTGTGGAAGAGCTTTCGTAACTGAGGCGGAATCGGATCGACATATGTTGACGCATACTGTTGATAAATCGTACCCGTGCACGATGTGTAATCGAGCGTTTACCAATCAAACGTATTTATCGAAACATATGCTTACGCATACGTTTAAAGAGTTGCTTGTGTGCACGTTTTGTGATATACGTTTCGTTAAAGAGCTTTATCTGACGCGGCATATGTTGATCCATAAACAGGATATGGTGCACGCGTGTTTGGTGTGCGAGCGATCGTTTTTAACGGAGTTTTGTTTGAGTGAGCACGCGCGCACGCATGCTGGGGAAGTGTTTCCGTGCTCGATTTGTCATGTTTCGTTCGGTAAGAAGGAGCATTTGAATAAGCATATGCATAAACATAGTCATAAAGCGCATTATTCGTGTCCGGTTTGTTTTAAGTTCTACTTTTTTACGGCTAGTTTGGAGTCGCATATGTTGCGGCACTCGGAAACGCCGTCGTTTTTGTGTTTCGTTTGTCGCGAAACGTTTTGTAGTATTGCTGAGTTTATACAACATGGGAAACAACATCCTGGCGATTGCCGTTATAAGTGTCCGATATGCAATTTGGTCTCGTTTAGGAAAcagttgtaa
- Protein Sequence
- MDKSVIHIDNLVRENTQILRDLDELGTPKIGKITDETFEVCRTCLATTNLESLYDITQRLDEMLMICASIKCSISDGLPIKICTDCIDEVQRSYKFVIKCREIDTKLRECYKKIAIENAPEIKKEINPELVLIKPTNSNHELSDIALKDPLEIYQEPDLDIVKHEFTEIKQEITTEQIPLTQHTQKDYQCNICHKIFVTIASLRRHLFEHTKRHITYPCRVCAKSFRYNYALKAHMCVHNAQKFTCTVCGKIFAHECNLTAHLATHGTLLSCTICRCSFRKERNLQRHMKALHEVFDCEVCGWAFLEKDLLLEHVTSHHTKHSYICAICGRAFVTEAESDRHMLTHTVDKSYPCTMCNRAFTNQTYLSKHMLTHTFKELLVCTFCDIRFVKELYLTRHMLIHKQDMVHACLVCERSFLTEFCLSEHARTHAGEVFPCSICHVSFGKKEHLNKHMHKHSHKAHYSCPVCFKFYFFTASLESHMLRHSETPSFLCFVCRETFCSIAEFIQHGKQHPGDCRYKCPICNLVSFRKQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039516;
- 90% Identity
- iTF_01039516;
- 80% Identity
- -