Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000013.1:1170773-1172738[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00061 0.059 14.7 4.8 1 23 254 276 254 276 0.98

2 12 0.0014 0.13 13.6 0.2 1 21 285 305 285 306 0.95

3 12 9.9e-06 0.00096 20.3 1.9 1 23 313 335 313 335 0.99

4 12 0.003 0.29 12.5 8.2 1 23 341 363 341 363 0.97

5 12 3e-06 0.00029 22.0 0.5 1 23 369 391 369 391 0.96

6 12 3.5e-06 0.00034 21.8 1.2 1 23 397 419 397 419 0.97

7 12 0.13 12 7.4 1.8 1 23 425 447 425 447 0.97

8 12 5.4e-07 5.3e-05 24.3 0.4 1 23 459 481 459 481 0.96

9 12 0.00011 0.01 17.1 5.3 1 23 487 509 487 509 0.98

10 12 0.00026 0.025 15.9 0.1 2 23 515 536 514 536 0.97

11 12 1.7e-05 0.0016 19.6 0.7 1 23 542 564 542 564 0.95

12 12 0.0019 0.18 13.2 3.6 2 23 571 593 570 593 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00061	0.059	14.7	4.8	1	23	254	276	254	276	0.98
2	12	0.0014	0.13	13.6	0.2	1	21	285	305	285	306	0.95
3	12	9.9e-06	0.00096	20.3	1.9	1	23	313	335	313	335	0.99
4	12	0.003	0.29	12.5	8.2	1	23	341	363	341	363	0.97
5	12	3e-06	0.00029	22.0	0.5	1	23	369	391	369	391	0.96
6	12	3.5e-06	0.00034	21.8	1.2	1	23	397	419	397	419	0.97
7	12	0.13	12	7.4	1.8	1	23	425	447	425	447	0.97
8	12	5.4e-07	5.3e-05	24.3	0.4	1	23	459	481	459	481	0.96
9	12	0.00011	0.01	17.1	5.3	1	23	487	509	487	509	0.98
10	12	0.00026	0.025	15.9	0.1	2	23	515	536	514	536	0.97
11	12	1.7e-05	0.0016	19.6	0.7	1	23	542	564	542	564	0.95
12	12	0.0019	0.18	13.2	3.6	2	23	571	593	570	593	0.96

Sequence Information

Coding Sequence: atgatagaatttaacaaaatttgtCGATTATGTGTAAGTGATAGTACTACACTAACAAATATTCAATCGTTAGATGAGGATTCGGTGGCGTTATGcgataaattgaaaacagTTTGTGATATCCAAATAAACACGGACGACAGCCTGCCGACGACGATTTGCGATACGTGCCAAGAGAAACTGCGCCAGTTTTACGAGTTCAAATTAATGGTACTGCAGTCAAATGTGTTGTTGAATAAGTACAAGAAAGAATTGAATTTAAGTTCGTTGTTGGACATTCGAAAAAAGATCAATGCGGTGTTTCAAACTGTTGATATCAAACAGGAGGATTGCGGCGTGTCGGGTGGGCAACCGTGTTTGGTAGATCCGCTTGCCGAAGTGAATGTCTCACAGAATGTGATACCGTTGCGGAAAACACATGATGAGAAAAGTGAGAAAATGTCTGATAGCGAAAACGAATATGAGACTGAGTTTTTGGATGATACTTTAGAGTTAGATGTACAAGAAGTCGATGTTTTAATCAATTGGTCTAACAAACCTCAAGAAGAtgcCTCTACCAGTGAACCACCTCCCACCGACTCACCAATCcaaacaaacacaaaacatATAATCACTGATAGCAGCGATGATGAAACATATATCGTAAAAGATGAAGATGACAAAGAAGAATCAGGTAGTGAAGCAGAATCAACATCATCATCAAAAGACCAGGATTACATCCCCGAAAAGCGATCCCATAAATCGCGCAAAACCGGCCCGTTCTATTGCCACATATGCGACAAACATTTCCCGAAAAACGCCGGCCTCTACCAACACACATTCACGCACGTCATGCGCCAAGCGGACGACTCATACAAATGCGCAAAATGCGACAAAGATTTCACATCAGATCTCGGTCTACGCCAGCACATCCTACGCTATTCCGGCGACCGTCCATACAAATGCGATTTATGCGAAATGACCTTCACCGACAAACCGAATCTATACAACCACAAACGGAAACACAGCGATGAACGGCCATACTGTTGTCAAGTATGCGGGAAAACATTCAAATTCGCCAGTTGCAAACGAACACACATGAAATACCACAGCGGCGAAAAACCATTCCTATGCAACATATGCGGAAAAGCGTTCACACTAAAAATAACACTCAAAAACCATTTGAGAATTCACACCGGCGAAAAACCATTCACTTGTCAAATATGTGGTACAGGATTTTCCGATCCGTCTAGTTTAAAATCGCATCATGTTAAACACACCGATGGTAAACCGTTTAGTTGTGATATATGTTTCCAGGATTTTAAGTGGGAGAAAAGTTTGAAATCGCATAAAAAACTGCATACTAGAACCGCGGAAGAGCTGACGGAAAAGCGTTTTTCATGTGAACTATGCGGGAAAATGTTTCGCACGAAAGACTCGTTAAATAAACACGCCGCTGTGCACTCCGATGCGCGACCGTTCAAGTGCGATTTATGCGGTAAAACATTCAAATTCCAAAGCTGTTGGCGGACGCATGTTAAGTACCACGGTGGCAAACGAGTTGTTTGTAACATTTGCGggaaaaaatacttaaataactCCGTACTAGCGAATCATATGCGGCTGCATACGGGTGAGCGGCCATTTAAGTGTGATTTGTGCGAGAAACGATTCGCGGATAACTCAACGTTGCGTTCGCATAAAATTGCGCACTCGAACATAAAAGACCAGAAATGTGATTATTGCGGATTGGAATTTAAACATAGGAGctatttaatgtttcatattAAGAAGAAACATCCGGAAATGAAATCTGAACATGAGACTAGAGTTGAGATTAGTGCGGATCCGCAGTGA
Protein Sequence: MIEFNKICRLCVSDSTTLTNIQSLDEDSVALCDKLKTVCDIQINTDDSLPTTICDTCQEKLRQFYEFKLMVLQSNVLLNKYKKELNLSSLLDIRKKINAVFQTVDIKQEDCGVSGGQPCLVDPLAEVNVSQNVIPLRKTHDEKSEKMSDSENEYETEFLDDTLELDVQEVDVLINWSNKPQEDASTSEPPPTDSPIQTNTKHIITDSSDDETYIVKDEDDKEESGSEAESTSSSKDQDYIPEKRSHKSRKTGPFYCHICDKHFPKNAGLYQHTFTHVMRQADDSYKCAKCDKDFTSDLGLRQHILRYSGDRPYKCDLCEMTFTDKPNLYNHKRKHSDERPYCCQVCGKTFKFASCKRTHMKYHSGEKPFLCNICGKAFTLKITLKNHLRIHTGEKPFTCQICGTGFSDPSSLKSHHVKHTDGKPFSCDICFQDFKWEKSLKSHKKLHTRTAEELTEKRFSCELCGKMFRTKDSLNKHAAVHSDARPFKCDLCGKTFKFQSCWRTHVKYHGGKRVVCNICGKKYLNNSVLANHMRLHTGERPFKCDLCEKRFADNSTLRSHKIAHSNIKDQKCDYCGLEFKHRSYLMFHIKKKHPEMKSEHETRVEISADPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039519;
90% Identity: iTF_01039519;
80% Identity: -