Nsal002241.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000013.1:1597855-1599501[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.73 71 5.0 0.4 3 22 138 157 136 160 0.86 2 11 8e-06 0.00077 20.6 5.0 1 23 166 187 166 187 0.97 3 11 0.00019 0.018 16.3 1.9 1 23 193 215 193 215 0.98 4 11 4e-06 0.00039 21.6 3.4 1 23 221 243 221 243 0.98 5 11 1.4e-06 0.00013 23.0 1.7 1 23 249 271 249 271 0.98 6 11 0.012 1.1 10.7 4.3 1 23 284 306 284 306 0.98 7 11 0.0017 0.17 13.3 0.4 1 23 311 333 311 333 0.95 8 11 5.1e-06 0.0005 21.2 1.5 1 23 339 361 339 361 0.98 9 11 4.2e-06 0.0004 21.5 3.5 1 23 367 389 367 389 0.98 10 11 3.4e-07 3.3e-05 24.9 0.7 1 23 395 417 395 417 0.99 11 11 3.4e-06 0.00033 21.8 0.3 1 22 423 444 423 444 0.96
Sequence Information
- Coding Sequence
- ATGGCCAGCTTACATCTAGATAAAATCTGTAGGACATGTTTGAGGGTATGCGATGTTGGATCTATCTATACGAAAACTACGGTGGTGGATAGTGTTTCATTAGctgaaatattgaatattttggtTTCTATTGAGttcgttgaaaatgataaattcCCATCGCAAATATGTACACAATGTTCGAATGAAGTGCACAGGTTTTATAAGTTCAAGCAACTGTGTGAAAAGTCGGATGAAactctaaaatattattttgatttattagATACACCAGCGAACAGTGAAATCGTGATCAAAAGTGAAGATGGTGATGTATCATGGAAGCAACAAAACACGGTAAATgctattaaaacaaaaggTACGGTAAACAGACGGAAAACAGTATCGAAATGCTCGCGCCCACCACTAATATGTAAGCCTTGCGATATTAAGTTTGAGACGAAAGAAGAACGAAATGTGCACCGTTCGAAAATCAAACACCCACGCGATCGCAATCATTCGTGTACGATTTGTGGCAAATCATTCACCTATTCGCAGCTATGCGTACACATGCGTAGTCACACGCACGAAAAACCGTACTCGTGTGAAGTTTGCGCTAAACAGTTCACGCTGAAGTGTAATTTGCGGCGGCATGCCATGATACACACTGGGGAACGGCCGCATAAGTGTAACTTTTGCGGTAAGGGGTTCATACAAGCGACATCACTACACGAACACATCCGTACGCATTCCGGGGAAACGCCATTCGTTTGCAACAAGTGCGGACGAACCTTTAACCAACGGCGACTACTAGAGCTTCATTTAAAACGACATATTTATGATGAGAAAgGTAAACATCAAATTTTCGAGCACCAATGTGAAGTTTGTCTCAAAACATTCTGCTCGAAACCTATATTAAAAACGCACCAGTTGTCTCACGGCGCTAAAAGCTATTTATGTAGTAATTGTGGTCGTGGTTTCGTTAGTATGGCGGGTTTACATTCGCACGAAAAAGTACACACTGGCGACAAACCATATAGTTGTAAATTTTGCTCGAAAACATTCGCGCAATTAGGCTCGCTCAAAAGTCACCTGCTCACGCACACCGGCGAGCGGCCTTATGCGTGTTCGGTTTGTAAGCGTTCGTTTACGCAAAGCTCGCATTTAATGTACCATAAACGAATACATACCGGCGAACGGCCGTACTCTTGTGCGGTGTGCGATAAACGGTTCACCCTTAAAGGCACCCTTACTGTTCATATGCGCACGCACACCGGGGAGACGCCATTCGTGTGTCCTGTGTGTGATAAAGGCTTTTATGATTCGAGCTCGATGAACAGGCATCGTCGTCGTCGTAGTTGCACTTCATTACCGTCCCAATCTAAtttaacattaattaaattagagTGA
- Protein Sequence
- MASLHLDKICRTCLRVCDVGSIYTKTTVVDSVSLAEILNILVSIEFVENDKFPSQICTQCSNEVHRFYKFKQLCEKSDETLKYYFDLLDTPANSEIVIKSEDGDVSWKQQNTVNAIKTKGTVNRRKTVSKCSRPPLICKPCDIKFETKEERNVHRSKIKHPRDRNHSCTICGKSFTYSQLCVHMRSHTHEKPYSCEVCAKQFTLKCNLRRHAMIHTGERPHKCNFCGKGFIQATSLHEHIRTHSGETPFVCNKCGRTFNQRRLLELHLKRHIYDEKGKHQIFEHQCEVCLKTFCSKPILKTHQLSHGAKSYLCSNCGRGFVSMAGLHSHEKVHTGDKPYSCKFCSKTFAQLGSLKSHLLTHTGERPYACSVCKRSFTQSSHLMYHKRIHTGERPYSCAVCDKRFTLKGTLTVHMRTHTGETPFVCPVCDKGFYDSSSMNRHRRRRSCTSLPSQSNLTLIKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039517;
- 90% Identity
- iTF_01039517;
- 80% Identity
- -