Nsal002246.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000013.1:1615139-1620551[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.96 93 4.7 5.2 2 23 433 451 432 451 0.73 2 16 0.00056 0.054 14.8 1.6 2 23 458 479 457 479 0.94 3 16 0.11 11 7.6 4.4 1 23 487 509 487 509 0.98 4 16 0.0035 0.34 12.3 0.2 2 23 547 568 546 568 0.96 5 16 0.0017 0.17 13.3 0.9 3 23 575 595 574 595 0.97 6 16 0.0037 0.36 12.2 0.8 1 22 741 762 741 765 0.90 7 16 1.1 1e+02 4.5 0.1 2 17 771 786 770 791 0.84 8 16 7.1e-07 6.9e-05 23.9 0.5 1 23 797 819 797 819 0.97 9 16 7.8e-06 0.00075 20.7 0.9 1 23 825 847 825 847 0.98 10 16 4.5e-05 0.0043 18.3 1.7 1 23 853 875 853 875 0.97 11 16 0.019 1.8 10.0 0.3 2 23 894 915 893 915 0.96 12 16 0.0058 0.56 11.6 0.6 3 23 922 943 920 943 0.96 13 16 4.5e-05 0.0044 18.3 1.1 1 23 948 970 948 970 0.96 14 16 0.0037 0.36 12.2 2.7 1 23 976 998 976 998 0.98 15 16 4.3e-07 4.2e-05 24.6 0.1 1 23 1004 1026 1004 1026 0.98 16 16 7.4e-05 0.0072 17.6 0.8 1 23 1032 1054 1032 1054 0.96
Sequence Information
- Coding Sequence
- ATGTTGAATGGTATAAAATCAACAGAGATTGATATGAATAAAGTGTGTAGAACTTGTCTAGCAACCGGGGAATTGATATCCATATACAAACCATGCTCGACAGGACCTTGTATTTTACAGAAATTAACTTCAGTTACATCCAAAAAGTATTACGATTGTTTCGGTTTACCAACGCAAGTGTGTAACGTTtgcatttatgaaataaaccGTGCGTACAAATTCGCAACGAAATGTCACGAAACCGATCGGAAATTACGTGATTATATACGGAAAATAAATACGCAATCCGAGGATTCGCCAACGTTATCCCAAGTGGTGGGTCATTTCGAAAACGCCGGTTTCGATTTAACCGGTTCGGCGCATCAGCGCTCAATTCACGTTACGATTAATTACGATTCGGACGAATCCGATTTATCCGAAATTAACGACAACAATCATAATAAATCCGAACACGAAGTATCTTCATACTGCACCAAATCAGATGATGAATTATGCAAGTTTCAAGAAGACGATATAAAAATCGAATTGACCAGCGAAATCGATTTGGGTATAACCGAATTATCGAATCATTCAATTGAAGATATAAACGTTTTAAATACAGATTCCGAATTACAAATCAAAACTGAAATTGACGATAATTCCAATGACTCACCGATAAGCAATGAAATCGGAAACAATTTCGAATCTGAATGTTCATTAACGTCAGACGTTTTCAATACGTGTGAAGTTAACGCCAATGAAATAAACCAATCAGACAATCAGAACACAGTTTCACTAaatttcaaatctaaaacACCAACAAGTGCCATTGATAAGCAAATATCCCCACATCAGGATTGTGATTTAGAACAGTCGAATAACGAAAATCGAATTACTTCTAACTTAGAATACTCTGAATATGGGATAGATTTTGAGGAACGAGTCTTAGATCAGGATTTAAATCAAACACAATTAGGGTTTGAAAAGGatatgaaagattttttaGCTGTAATATCCCCGCCGCCAGATGATCAATCACACAAAGAAATTGATTCGTTTGAAATTGATATCCAACATTTTATAGATAAAGTGTCTCCTAAATTGCAAGTACATACAGAAGCGGCTGAACCGGAAACTAGTAATTATTTCGATTTAGACTTAGTCAAACCGGAACTAGATGAATTAGATCCGTTAGTTATTGATGAGGCACTTTGTAACGACATCAGAAATGAAACTGTTCCAATTGAGCAATCAAATGTTAAAAtaaatagtCAAAAGACGGAAAAGATACCGTGGAAAGACGGTCGTAAATACCATCGTTGCTCAGTGTGTTCGCGAACAGTGCGCCATTTAACGAGACACATGCGCGGTCACAAAGAGGACACAAGTACCATGTGTGAGATATGCGggaaaatacttaaaaattcgaaacattttataaaacatcaaaCGGCGCATAAAACGAGAGGTACCAAAGAATTCAAGTGCGATGCGTGTGCGAAATCATTCTTCGAATTAAAACATCTACGGGAACATCGACATGTTCACAAAACAGCCAGGATATGCCCGCAAAGAATCGTAAAACACCAATGCGATAACTTACCAGAAAACCCAAAAGacaTAACACCCGATCCTGTCCAGCAAACAAAAGAGCTAATCAAATGTGATAAATGTGACGCTATGTTCACATCGGTGGATACATACAACGCACACTACTTCATTCACACAACGAAAAAAGAATCATGTGCGAAatgcaaacaaatatttgattccAATCAATTATTAACAGAACATTTAAAAACGCACACCGAACCGATAACAAATCACGTTATTACGCCGGaaccTCTTAAAGtcaataaagaaatattaactAGTGAAATGAAACAAACACTAGCTCAAATGTTGAGACAAAAATACAGGGAAAATTACTCcaatagtaaaaaatatattgttcgaCTTAAACCCTTAACAACTACCAaagaaacatttaataaatctaaacTATCAAATTTTGAGTTTCATATTGAAAATGAGCGACAAGATTTCGATTATATCGAACATAATCAAAGTGATTTAGTCGATTTTGTAACGAATGAACTAGATGAACCATCAAATACAGTGATTCCAAACACACCTGTTACTAGTGGTGATTTGACAATGGACTCAATTGAAGCAACCAAAAAACGtgtaaaaccaaataaaaatgatttgaaatcGTCGAAAACGAAACGAAAACCGCCATACGAGTGTAAAAAATGCGGTGAAAAGTTCCCACTGTATCGTTCGTTGCGGGAACACTTCAAAAACATACCGCACAAGTACACGCGCAAACCGTGTCCCATATGTGCGAAACCCGTCACATATTGGTACTATTTACGACACGTGGACTCGCATAAAGGTCTGCGGCCgtatatttgcgaaatatgCGGTAAAAGTTTCGTAAACATTTCCAACTACAAACGCCACCAATACATACACCTCGCCGTGAAACCGTTCACGTGCGACATTTGCGGCAAAGGATTTCCGCAAGCGTTTTGTCTCAACGAGCACAGGCGCATTCACACCGGCGAACGACCGTTCATATGTTACAAATGCGGCCAAACATTCCGAAGTTCAGtgtatttaaaacaacatttagATAAACACGAACAAGATATAAAAGGACGCGTAGCAGAACAAGAATCGACAGAACTACCAATAACATGCGGCATATGTAACCAAATCTATACAACGTTGCGTGGCTTTAAAACGCACAGCGCTACGCACCAAGCGAAGCATTTCGGGTGTTCGATATGCGGCAAATATTTCGTCACCGATTACCGGTTGAAAATGCACGAACGGTATTACCACGGTCACCGGAAATTCGCGTGCGATATTTGCCAGAAGACGTTCTCGATGCGGAATTCGTTTAAGCAACACATGTTGGCGCATTCCGGCCGCAAAGATTACTCGTGTGATGTGTGCTTGAGGAAGTTTAACAGTTACGGACATATACGTTACCATATGTTGACGCATACGGGTGAAAAACCGCATAAGTGTAACGTTTGCGGGAAAGCGTTCGCCGGCAATGGGAATTTGGTCGTACATATGCGCATACATACTGGCGAAACGCCGTATTATTGTTCCGTTTGTCAAAAAGGCTTCTATGATTCGAGTTCGATGAAAAAACACCTTGCAGGACATTCGAAAAccaaataa
- Protein Sequence
- MLNGIKSTEIDMNKVCRTCLATGELISIYKPCSTGPCILQKLTSVTSKKYYDCFGLPTQVCNVCIYEINRAYKFATKCHETDRKLRDYIRKINTQSEDSPTLSQVVGHFENAGFDLTGSAHQRSIHVTINYDSDESDLSEINDNNHNKSEHEVSSYCTKSDDELCKFQEDDIKIELTSEIDLGITELSNHSIEDINVLNTDSELQIKTEIDDNSNDSPISNEIGNNFESECSLTSDVFNTCEVNANEINQSDNQNTVSLNFKSKTPTSAIDKQISPHQDCDLEQSNNENRITSNLEYSEYGIDFEERVLDQDLNQTQLGFEKDMKDFLAVISPPPDDQSHKEIDSFEIDIQHFIDKVSPKLQVHTEAAEPETSNYFDLDLVKPELDELDPLVIDEALCNDIRNETVPIEQSNVKINSQKTEKIPWKDGRKYHRCSVCSRTVRHLTRHMRGHKEDTSTMCEICGKILKNSKHFIKHQTAHKTRGTKEFKCDACAKSFFELKHLREHRHVHKTARICPQRIVKHQCDNLPENPKDITPDPVQQTKELIKCDKCDAMFTSVDTYNAHYFIHTTKKESCAKCKQIFDSNQLLTEHLKTHTEPITNHVITPEPLKVNKEILTSEMKQTLAQMLRQKYRENYSNSKKYIVRLKPLTTTKETFNKSKLSNFEFHIENERQDFDYIEHNQSDLVDFVTNELDEPSNTVIPNTPVTSGDLTMDSIEATKKRVKPNKNDLKSSKTKRKPPYECKKCGEKFPLYRSLREHFKNIPHKYTRKPCPICAKPVTYWYYLRHVDSHKGLRPYICEICGKSFVNISNYKRHQYIHLAVKPFTCDICGKGFPQAFCLNEHRRIHTGERPFICYKCGQTFRSSVYLKQHLDKHEQDIKGRVAEQESTELPITCGICNQIYTTLRGFKTHSATHQAKHFGCSICGKYFVTDYRLKMHERYYHGHRKFACDICQKTFSMRNSFKQHMLAHSGRKDYSCDVCLRKFNSYGHIRYHMLTHTGEKPHKCNVCGKAFAGNGNLVVHMRIHTGETPYYCSVCQKGFYDSSSMKKHLAGHSKTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -