Nsal005138.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000030.1:1522377-1523978[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0024 0.23 12.9 0.9 2 23 109 130 108 130 0.96 2 13 1.2e-06 0.00012 23.2 0.5 2 23 156 178 155 178 0.96 3 13 0.003 0.29 12.5 0.3 2 21 193 212 192 213 0.94 4 13 0.00039 0.037 15.3 1.5 2 23 235 256 234 256 0.96 5 13 2.6e-05 0.0026 19.0 1.4 2 23 266 287 265 287 0.97 6 13 2e-05 0.002 19.4 2.3 1 23 293 315 293 315 0.98 7 13 6.1e-05 0.006 17.8 4.9 1 23 321 343 321 343 0.97 8 13 4e-05 0.0038 18.4 4.3 1 23 349 371 349 371 0.98 9 13 1.1e-06 0.00011 23.3 0.4 1 23 377 399 377 399 0.97 10 13 1.1e-06 0.00011 23.3 2.1 1 23 421 443 421 443 0.98 11 13 8.3e-07 8e-05 23.7 0.5 1 23 449 471 449 471 0.99 12 13 4.1e-08 4e-06 27.8 3.2 1 23 477 499 477 499 0.98 13 13 2.7e-06 0.00026 22.1 1.4 1 23 505 527 505 527 0.99
Sequence Information
- Coding Sequence
- ATGAGGAACACCGACGAAATACTTAATACATTACatattcaagaaaataattgTGAAACAGTCAAAATTATTTCGGCTAATTTCATCGAAGAATCATCCCCGTTGTCTGATTATCATAACAGTGATACAACAATCAGTGATAAAGTGTTGTTTAGTGATTTAAGCGTGAGGAAAAATgacgaaaaattaaaattcgacCATTATGCCGTACAACCAAAAAATTGCGATACTCCGAACAATCgtttacaatatatacattCATCAAATTTCGACAAACCTAGTATAATCGAGCACAGCGTAATAAATAACGTTGAAATCGCACTAAAATGTGAACATTGCctagaaatatttacaaataaacttGATTTAAGTGAACATTTAGCAAAACATAGTAAACTTCGAAATCGCAATAATTCACACGACATACctttaatatatgaaaaaccgtgtgaaaatattaaattaaaatgtgaaCATTGTGACGAAGTGTTCACAAATAAAGTAGAGTTGAAAGAACATATTAATAGCGCTCATAGTACAAGTTTAATACAAGAAAATGGTGAAAGTATGAAGATAAAATGTGAACACTGCGCGGaaatattcacaaataaacTCGATTTGAGTAAACATTTAAACGACCGTACTACTAAATGCTATGAAGCGCCATCTAtgatttacaaaaatagtGATGAAATTAAGTTGAAATGTGAACACTGtgtgaaaatattcacaaacaAACTTGATTTAAGTGAACATTTGAAGGAGCATACTAAATTACGTAAACGAAAAGTGCAACAGTGTGAATTTTGTGGGAAAATAACTAACTTCCGGTCTGAGTTAAAAACTCATATGCGACTTCATAGTGGTGAACGTCCTTATAAATGCGCTACTTGCGGCAAAGCCTTTAGATTACGTTCATTTCTGCGTAAACATTTCTTAACGCACGCCGCAATCCGAAGTCACCATTGTATGTTTTGTCCAAAAAGTTTTGTATTAAAGAGTAATTTAAATAGTCACATAAAAACACATTCAGGCGATAAAAAATATCCGTGTAATGTGTGccataaaaaattcaaaacatcACGTTCATTATCATATCACTTAAAACTACATACCGGCGAACGTAATTTCCCGTGTTCGTATTGCGAGAAAGCATTCGTCAACCCATTTGATTTGAAGCGCCATTTGAATTTACAcgaaaaatacaaacaaatccGTGAAGGAACTTATGATAAATCACAGGAACGGCCTAAACAAATGCACCAGTGTGAAAATTGCGGTAAATTCTTTCCATCTCGTGGCGATTTGACGAAGCACAAACGTGTCCATACTGGTGAGAAACCGTTCAAGTGCCAGTATTGTGAGAAGGCGTTCGCAGGCTCGAGTGCGTTGACTGTGCACACGCGGACACATACAGGCGCCAAACCTTACACGTGCCACCATTGCGGATTATCGTTTGCGCAGTCGTCGAACCTTAAGGTCCATATTAGGTTGCATACTGGAGTTAGGCCGTATACGTGTTCGTTGTGCTCAAAAGGGTTCAATCGTAAACGAGATCTTGAAGcccatttgaaaaaacatataGGGATAAATAAGATGTAA
- Protein Sequence
- MRNTDEILNTLHIQENNCETVKIISANFIEESSPLSDYHNSDTTISDKVLFSDLSVRKNDEKLKFDHYAVQPKNCDTPNNRLQYIHSSNFDKPSIIEHSVINNVEIALKCEHCLEIFTNKLDLSEHLAKHSKLRNRNNSHDIPLIYEKPCENIKLKCEHCDEVFTNKVELKEHINSAHSTSLIQENGESMKIKCEHCAEIFTNKLDLSKHLNDRTTKCYEAPSMIYKNSDEIKLKCEHCVKIFTNKLDLSEHLKEHTKLRKRKVQQCEFCGKITNFRSELKTHMRLHSGERPYKCATCGKAFRLRSFLRKHFLTHAAIRSHHCMFCPKSFVLKSNLNSHIKTHSGDKKYPCNVCHKKFKTSRSLSYHLKLHTGERNFPCSYCEKAFVNPFDLKRHLNLHEKYKQIREGTYDKSQERPKQMHQCENCGKFFPSRGDLTKHKRVHTGEKPFKCQYCEKAFAGSSALTVHTRTHTGAKPYTCHHCGLSFAQSSNLKVHIRLHTGVRPYTCSLCSKGFNRKRDLEAHLKKHIGINKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -