Nsal013181.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria salina
Gene Symbol
-
Assembly
GCA_944039265.1
Location
CALUEJ010000124.1:444058-450301[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2.6e-06 0.00026 22.1 3.3 1 23 859 881 859 881 0.99
2 15 1.1e-06 0.0001 23.4 0.9 1 23 887 909 887 909 0.99
3 15 0.0033 0.32 12.4 6.1 1 23 915 937 915 937 0.98
4 15 0.00013 0.012 16.9 5.4 1 23 943 965 943 965 0.98
5 15 0.0037 0.36 12.3 5.3 2 23 972 993 971 993 0.96
6 15 1.2e-05 0.0012 20.1 2.1 1 23 999 1021 999 1021 0.99
7 15 2.2e-05 0.0021 19.2 3.0 1 23 1027 1049 1027 1049 0.97
8 15 2.3e-05 0.0022 19.2 3.8 1 23 1055 1077 1055 1077 0.98
9 15 0.0006 0.059 14.7 0.4 1 23 1083 1105 1083 1105 0.98
10 15 0.00062 0.061 14.7 6.5 1 23 1111 1133 1111 1133 0.98
11 15 5e-07 4.8e-05 24.4 0.4 1 23 1139 1161 1139 1161 0.98
12 15 7.7e-06 0.00075 20.7 0.8 1 23 1167 1189 1167 1189 0.98
13 15 3.8e-07 3.7e-05 24.8 1.8 1 23 1195 1217 1195 1217 0.98
14 15 8e-08 7.7e-06 26.9 0.3 1 23 1223 1245 1223 1245 0.98
15 15 0.00022 0.021 16.1 0.4 1 23 1251 1274 1251 1274 0.96

Sequence Information

Coding Sequence
ATGTTAATGTTATGCACTCCAGTAGAATATAATGAAAATGATGGTTTACCGCTGCACATTTGCACGGATTGCACAAACGAATTAAAACGGTCGCACAGTTTTGCGTTAAAGTGCCGCGAATCGGATGCCCAATTGCGCAATTATATACAGAAACTTGTTCCGCAAGAGTATGCGAAACCGAATTGTTTCGAGCCGATTCGGTCACTTAAAGAGCCGTTGGAAATCTGCGAATTGGATGATGAGTTGAATCATGAAATGATGATGAAAAACGAGTTTGATGATACGGGGGATCCGCATATGATAGATCCGATGCAATTTAACGACTTTACGGATGTTATTAAGGTTGAAAGTGAGAGTGACGCTGAAGATACACAAACACCGCCAGATGTCTCTATGACTCAAgtgcaggatatttttgaagaacCAAACCAAAGTTTACACGTTAAGGCCCGTAAATCAACGCGAAAACCAATTGGCCGAGGCAGTGGACGGTTGTACCACGAAGACTGGTTCTATAAGTTCGGCGTCATCGAAAAACATAGCAAAGCGTTCTGTATCATGTGCAACAACGCCGTCGTCACCCGCACATTTAACGTAAAACGGCATTTCCAATCGAACCACAAAAACCTAGTGTCGCTAACGAGCGACGAGAAACGAGTACTATTCACTCAGAAACTAATACAGTATCATGAGCAGCCGAAAAGGCGCGAGCATGTTGAGAGTTCTGCCCCGAAACGGCAGAAAAGCGATGTTTTAAAGCGGAAgctaaaaattactaataaacCGGCGGGGAGCGGGCGGCAGTATCATGTTGAGTGGTATTCGAAGTTTGGTGTTGTTGAGCGAAGCGGAAAAGCGTTTTGTATTATGTGCAATAAAACTGTTGTTTCGCGCAGTTTTAACGTGCGGCGGCATTACGAATCGCACCATAAAAACCTAATGACTCTAACGAGCGATGAGAAAATGTTACATTTCTCACAATTACAACAATTAGCGACTAAATTTACTAACAATAGCAaattacGCAATAACAAACGAAAATTGGAGCAACAAGAAGCTTTAAAATCGCTTAAACCAACCAATATAAAAGTCATGAAGctacaaaaaatgtataaaccCGATAATTCAGCCTCAAATGTCACGAAACGTTATATACTAAAGCCAAAAAGACAATCCATGAAcgacatatatttaaaacatcaataCGACACCAACAAAATCTTCTCCAGCGACATGGAGGAGGACTTCAAAGAATACATCGCCATGGCCTTCCGGTTACATCAAGGTCAATCACCAGACATCATAAAGAAACTAGCGTACCAATTCGCGAAAAAACACCTCATAAAAACCCCACCAACATGGTCGACCATCCAAATGGCGGACGATAATTGGCTGCTCAAATTTTGCAAAAGACACCCTTACATATCATTCCAACGCCTCGAAGACGGTGAAGAAGACTTTTTTAACAACTTATCCAGCGCGTATCGCCATTTGACCAACATGCATAAAGGATGCGTGTACAATTTCGCGGAAATCGCATTTAAAACCACGCACGACGAAATCGATACGTTTAAATGCGTAACAGCGTGTTGTTTTGTTAACGCATCCGGACGTTCAATTCCACCGTTTTTAGTATTCCCTGGGTTTGATTTCAAACCGTTAAAGCTCGGAGCGCCAGCTGGGAGCTTAAGTGCCGCCACGATAGACGGTTGTGTGAACGGGGcgttgtttattaaaatattagagCATTTCGTGAAGTTTTCGAAGTGTAACAAGGACAAACCGATCATTTTAATTGCAGACTATCacgagaaatatattacgttaGATAGTTTAGAGTTTGCGAGAGAAAACGGGGTGATTTTTATGACGGTGCCGCTGAATAACGTAAACGAATTGCAACCCTTACACAAAATTGTTTTCCATTCATTGCGACGCCACTATgataatacttttattactttCGATCAACCCGTATCGCTTAATACGATCGATCAATTATTTTGGAAGTGTTATCATAAAGCGTTTACTGCAGCGAATATCGAGAATGGTTTTAAGACATGTTTATCGCCACTAGATTTAAGTTCAATGTACGCTAAAAGCTCAACTCAAGCTAGTTTAGCAGATATGTTAATGATTTGTACTCCAGTGGAGTATTATGAAGATGATGGATTACCGGGTCAAATGTGCACTAAATGTGTGAACGAGTTAAACTACTCGTATAGatttgcgttaaaatgccGGCAAACAGATGATGAGTTACGGTTATATTTAGCTAAACGTGCAGAACACAAACGACCCACTATTATAAGTGTGCTAACACCTAAAGCGCTAAAGGACCCACTAGCGATACCTGGGTTAGAGCATCTAGATGAAGTTGTGATTAAGGATGAAATCGATGTTGATATTAAGATTGAACCGGATGATTCACTTCAAATTGTTAATGTTGATGTTGGAATTATATTGGAAGCTAGTCGGAATATTAAAGATTCACAAGATGAGCAATTTGATATTATGAACATGCCGGTACATTTAGATTCACTTCAAACGGAACAAATACAAggCGAACGACCCTATAAATGCTCCATGTGCAACAAGTCATTCATACAAAAAACCAGCTTACGCTACCACATGCTCAAGCACACCGGCGAACGACCCTACTCATGTCAACTATGCGACAGGTCGTTCATACAAAAAGTCACGCTAGTGCAACATATGCGCACGCACACCGGCGACCGCCCACACACCTGTAAACTGTGTAACGGGTCGTTCCGAGAACGATGCGACCTAACCTCTCACATGCGACGACATTCAACCGTAAAACCCTACTCGTGCGAAGTGTGCAAAAGCTCATTTAAGCATCAACACAATTTAACCATCCACCGGCGGATTCACACGAATGAGAAACCGATTTCGTGCAACGTATGCGAACGCACCTTTCGGCAACATTGCGAATTAAAGTATCACATGTTTAGTCACACGGGTGAATCCCCGTTTAAGTGTACGGTTTGTGAGCGCTCGTTTCGccagaatattattttaaaacgacATATGCGCACGCACACGGGCGAACGCCCGTTTATTTGTGCGTTTTGCGATAAATCATTCACGTTAAAGAGCAatttaaaatcacatttatgTGTGCACACCGATGTGAAACGATTCACGTGCACTATGTGCGAAAGCTCGTTTAATCACAAATACACCTTAATTCGCCATATGCGAATACATAGCGATGTTAAACCGTATGTGTGCACGTTTTGTGATAGCTCGTTTAATCAAAAAATCGGTTTAGAAATCCATTTATTAAAGCACACGGGCGATAAGTCGTATTGTTGCACGGTTTGCAAAAACACGTTCTGGCAAAAATCGCATTTAATCCGCCACATGCGCACGCACACCGGGGAACGACCGTACCCGTGCGCGATTTGTAAAAAAGCGTTCTCGCTGAAAAGTGATTTGAAAACGCATATGCGGATACATACGGGTGAGAAACCGTATTCGTGTACGGTGTGCGAGATGTCGTTCACGCAAAAGCCTACGTTGAAGGTGCATATGTTGAAACATAGCGGGGAGAAACCGTATGCGTGCACGGTTTGTGGTAAGACGTTCACGCAGAAGCCGCACGTGACGCGGCATATGTTAACGCATACGGGTGAGCGGGCGTTTGTTTGCACGTTATGCGGTAAAACGTTCGCGTTAAACGGGAATTTGACGGCTCATATGCGCACGCACACTGGCGAACGACCCTATAAGTGTCCTGAGTGCGGGAAAGGGTTTTATAAGGGTGATGCCATGAGGAAACATAAAGAACGTGTACATAAAAACCAcgattaa
Protein Sequence
MLMLCTPVEYNENDGLPLHICTDCTNELKRSHSFALKCRESDAQLRNYIQKLVPQEYAKPNCFEPIRSLKEPLEICELDDELNHEMMMKNEFDDTGDPHMIDPMQFNDFTDVIKVESESDAEDTQTPPDVSMTQVQDIFEEPNQSLHVKARKSTRKPIGRGSGRLYHEDWFYKFGVIEKHSKAFCIMCNNAVVTRTFNVKRHFQSNHKNLVSLTSDEKRVLFTQKLIQYHEQPKRREHVESSAPKRQKSDVLKRKLKITNKPAGSGRQYHVEWYSKFGVVERSGKAFCIMCNKTVVSRSFNVRRHYESHHKNLMTLTSDEKMLHFSQLQQLATKFTNNSKLRNNKRKLEQQEALKSLKPTNIKVMKLQKMYKPDNSASNVTKRYILKPKRQSMNDIYLKHQYDTNKIFSSDMEEDFKEYIAMAFRLHQGQSPDIIKKLAYQFAKKHLIKTPPTWSTIQMADDNWLLKFCKRHPYISFQRLEDGEEDFFNNLSSAYRHLTNMHKGCVYNFAEIAFKTTHDEIDTFKCVTACCFVNASGRSIPPFLVFPGFDFKPLKLGAPAGSLSAATIDGCVNGALFIKILEHFVKFSKCNKDKPIILIADYHEKYITLDSLEFARENGVIFMTVPLNNVNELQPLHKIVFHSLRRHYDNTFITFDQPVSLNTIDQLFWKCYHKAFTAANIENGFKTCLSPLDLSSMYAKSSTQASLADMLMICTPVEYYEDDGLPGQMCTKCVNELNYSYRFALKCRQTDDELRLYLAKRAEHKRPTIISVLTPKALKDPLAIPGLEHLDEVVIKDEIDVDIKIEPDDSLQIVNVDVGIILEASRNIKDSQDEQFDIMNMPVHLDSLQTEQIQGERPYKCSMCNKSFIQKTSLRYHMLKHTGERPYSCQLCDRSFIQKVTLVQHMRTHTGDRPHTCKLCNGSFRERCDLTSHMRRHSTVKPYSCEVCKSSFKHQHNLTIHRRIHTNEKPISCNVCERTFRQHCELKYHMFSHTGESPFKCTVCERSFRQNIILKRHMRTHTGERPFICAFCDKSFTLKSNLKSHLCVHTDVKRFTCTMCESSFNHKYTLIRHMRIHSDVKPYVCTFCDSSFNQKIGLEIHLLKHTGDKSYCCTVCKNTFWQKSHLIRHMRTHTGERPYPCAICKKAFSLKSDLKTHMRIHTGEKPYSCTVCEMSFTQKPTLKVHMLKHSGEKPYACTVCGKTFTQKPHVTRHMLTHTGERAFVCTLCGKTFALNGNLTAHMRTHTGERPYKCPECGKGFYKGDAMRKHKERVHKNHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-