Nsal010112.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria salina
Gene Symbol
-
Assembly
GCA_944039265.1
Location
CALUEJ010000077.1:237549-241464[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.089 8.6 7.9 0.0 1 23 115 137 115 137 0.95
2 21 0.037 3.6 9.1 0.0 1 23 143 165 143 165 0.97
3 21 0.00011 0.01 17.1 0.1 1 23 169 191 169 191 0.96
4 21 0.58 56 5.3 2.5 1 23 197 219 197 219 0.98
5 21 0.00026 0.025 15.9 0.1 1 23 806 828 806 828 0.99
6 21 0.0012 0.12 13.8 2.1 2 23 835 856 834 856 0.95
7 21 0.0059 0.57 11.6 0.5 1 23 860 882 860 882 0.96
8 21 1.9e-06 0.00018 22.6 3.9 1 23 888 910 888 910 0.99
9 21 0.00093 0.09 14.1 0.0 1 23 916 938 916 938 0.97
10 21 1.2e-05 0.0011 20.1 0.5 1 23 944 966 944 966 0.98
11 21 4.2e-05 0.0041 18.4 1.7 1 23 972 994 972 994 0.99
12 21 5.9e-05 0.0057 17.9 0.1 1 23 1000 1022 1000 1022 0.95
13 21 0.0028 0.28 12.6 6.6 1 23 1040 1062 1040 1062 0.97
14 21 0.00048 0.047 15.0 1.0 1 23 1068 1090 1068 1090 0.98
15 21 4.1e-06 0.0004 21.5 0.4 1 23 1096 1118 1096 1118 0.99
16 21 0.00039 0.038 15.3 0.3 3 23 1126 1146 1124 1146 0.95
17 21 5.6e-07 5.5e-05 24.3 0.8 1 23 1151 1173 1151 1173 0.98
18 21 0.12 12 7.5 0.2 5 23 1182 1200 1181 1200 0.95
19 21 8.6e-06 0.00084 20.5 1.0 1 23 1206 1228 1206 1228 0.98
20 21 0.00017 0.016 16.5 0.4 1 23 1234 1256 1234 1256 0.97
21 21 0.0059 0.57 11.6 1.1 1 23 1262 1284 1262 1284 0.98

Sequence Information

Coding Sequence
ATGTCGAAATtacctgaaataaaattggaTAAAGTGTGCCGGGCATGTTTAACCACATCCGGCACTATGACGTCACTATACGAAGCGTTTTCCAGCTCATATATCGTATCATTAGCGGAAATGCTCACGATAATGACACCTTTAAGATGCGTTAAAGACGATGGAAAACCTTCAAAAATATGCGATAAGTGTATTAGAGAGTTGACGCGATTCAACGCGTTTCAAATCCAGTGTTTAGAGTCTGATGCTGTATTGGATACGCATATTAGCCGTTTGAGTAAAGGAGGCTTGGACACGCCCTGTGACCTAGTTTCTAGTGGACCAATCAGCGACGAGGAGGTGTTTACGTGCGTGATATGCGATGCTAGTTTTATGGTGGAGGAGGAGTTAGTGTTACATGTGGAGGAGCATTTAGGCGATAAGGTTTATATGTGCGATTTGTGCGATGCTGCGTTTGTTATGGAGGCGTTGTTTACGACGCATGTGCAAGAACACGCGGAGGTGTATTTGTGTGAGATATGCGATGCTAGTTTCACGACTGAAGATTTATTGAAGCTTCACGTACAAATACACACCGGAAGTGATaattataagtgtgtttattgTTGTGCTACGTTTAGACTCGAACGTTTATTAGAGTTACACCTACAAAAGCACATTGGGATGTATGTAAGTGATGATCTTAGTGACGTCACATTCACAAACGAGTCATTAACACAACAAATACAACCTAAAAACGACATATATGACGTCATAAACAACACAAAGAAGCCTATAACGCAgcatatacataaaaacacTCATGACATCACAACAAACGACTCTAAAACACGTCCTAATGACGTCACAAACACGCAACAAAAACAATCTAAAAACGACACTTATGACGTCATAAACAACACAAATGAGCCTATAAAGcaacatatacatatagacaATCATGACGTCACCACAAACAACTCTATAACACTTCATAATGACGTCACATTCACTACAACGCAACGTAACCAAATAAACGACACTTATGACGTCACAATCATCACAGATGATTTAACGCAATATATGCAAACCGACGCTCATGACGTCACATTTACAAACGAGTCACTTGCGCAACATAGCCAACCGCAAAACGACACTCATGACGTCACATTCACAAACGAGTCACTAACTCATATACAATCGCTAAACGACACGAATGACGTCACAATCACTATAAACGAGCCACTAAcaccatacatacataacgaCGCTTGTGACGTCATAATCAACTCAAACGAGTCTCTAGAGCAATACATCCAACTTGAAAACGACACTTATGACGTCATAATCAACGCAAACGAGTCTATAAcgcaaaatatacatatagacTCTCATGACGTCACATTCAACTCAAATGAGTCACTAACACTACATATCGCACCGCTAAACGACACTAATGACGTCATCAACACAAACGAATCACTAACTCTATATAACCAACCACTAAACGACACTCATGACGTCATCAACTCAAACGAGTCACTAACGCAATATATTCAACCTCTAAACGACACTAATGACGTCATCAACACAAACGAGTCACTAACGCCATATAACCAACCGCTAAACGATACTAATGACGTCATTAACTCAAACGAATCACTAACGCTATATAACCAAGCGCTAAACGACACTAATGACGTCATCAACACAAACGAGTCACTAACGCTATATAACCAACCGCTAAACGATACTAATGACGTCATCAACTCAAACGAGTCACTAACGTTATATAACCAACCGTTAAACGACACAAATGACGTCATCAACTCAAATGACCCAATAACGCAATATATCCAAACGTTAAACGACACTAATGACGTCATCGTCACAAATGAGCCTATAACGCAATATATCCAATCAATAAACGACACTAATGACGTCATAAACACAAATGACCCTATAACGCAATATATCCAAGCGTTAAACGGCGCTCATGACGTCATAAACACAAATAAGGCTATAAAGCAATATATCCAACCATTGAACGACACTAATGACGTCATAAACACAAATGACTCTATAAACCAATATATCCAAGCTTTAAACGGCACTCATGACGTCATAAACACAAATGAGCCTATAAAGCAATATATCCAAGCGTTAAACGGCACTCATGACGTCATCGCCACAAATGAGCCTATCGCGCAATATATCCAAGCGTTAAACGGCACTCATGACGTCATAAACACAAATAAGGCTATAAAGCAATATATCCAAGCGTTAAACGTCACTAATGACGTCATAGACACAAATGAGCCTATAACGCAATATATCCAACCGTTAAACAACACTCATGACGTCACAATCACCACAAACGAGTCTATACCATATATAGAGAGCGACGCGTGTGACGTCACAGTCACCACAAAGCTATATACGTGTGAAGTGTGCGAGACTACATTCATCATAGAAGGCTTATTAATACAACACATGCAAACCCATATAGGGCAACCATTGTGCGCATGCGCAATATGCGATAGCTCATTTATACACGACGAACTATTACGTAAACATATGCAAACGCATACGGACGCGTACGCGTGTAATGTATGTGATAGTACATTTATGCGTGAAGAGCTGTTAATTCACCATGCGCAACAGCACACGGGTAAAAAACCCTATAAGTGCAACGAGTGCCCGAATTCTTATAGtcataaatcaaaattgaaaatcCATATGCGTACGCACACCGGTGAGAAACCATATGCGTGCGCCATATGCGACAAATCATTCGCTATAAAAGGCATATTAACCGTTCATATGCGTTTGCATACGGGGAAAAAACAATTCGTTTGTGAAGTGTGCCGTAAAGCGTTTTATATCAAAGGTAATTTAACGAGTCATATGCAAACACACACGGGTGCGAAACCATATAAGTGCACAGAATGCGCAAGCGCATTCGTGCACCGCTCGAAGCTTAAAGTCCACATGCGCGTTCACACCGGCGAAAAACCCTACCTGTGTACCGTATGCGGGAAGACGTTCACCGTCTTAGGCAGTTTAACCGCCCACTCAAACATCCACGCACTTAAACCACGCCCACAACGTACAAATCACGCAAAAACGGACAAAAAACACCCGTGCACAATGTGTAATAGTGTATTCACGACACATAACCACTTAATGAATCATATGAGCCGCCATGACAGTATAAAACCGTATATTTGTGCGATATGTGGTCGAAGATTTGCGCAAAAGTTCATATTAAACGATCATATGCATACGCACACGAACGCGAAACCATATACGTGCGATATATGCGCGCGGGCGTTCAACGCTAAATCAACGTTGCGCGTTCATATGCGCACGCATACTAGTACGAAAGAGTGGGCGTGTCAGTTGTGTGAGAGTTCGTTTAGTCAGCGGAAAGATCTGACGAAGCATATGGGTGTACATGTACCGGTGACGTATGCTTGCCGAATATGCACGAAGGTGTTCGAGCGTCGCGTTGACTTGAAGCGGCATATACGAACGCATACGGAGGGTAGGCCGTTCGGGTGTGTGTGCGGGGATTCGTTCGGGCGTTTGGAGGATTTGCGTGTGCATAAACGGATGCATAGTGGCGAGAAGCCGTTCGAGTGTCCGTTGTGTGATTGTACGTTCGGACGCAAGGGGGACTTGACGGTGCATGTGCGGAAGCATGGTGGGGCGAAACCGTATGAGTGCGGGGATTGTGGGTGTTTGTTTCGTAGGAAGGAGGAGTTGAGTGCGCATGTGCAGGGACATGTGGGCGGGAAACCGTTTCGCTGTTCGATTTGTGATCGCACGTTTTTGTATGAGATTCGATTGATTAATCATTTACGCAAACATAGTGAGAcgatttaa
Protein Sequence
MSKLPEIKLDKVCRACLTTSGTMTSLYEAFSSSYIVSLAEMLTIMTPLRCVKDDGKPSKICDKCIRELTRFNAFQIQCLESDAVLDTHISRLSKGGLDTPCDLVSSGPISDEEVFTCVICDASFMVEEELVLHVEEHLGDKVYMCDLCDAAFVMEALFTTHVQEHAEVYLCEICDASFTTEDLLKLHVQIHTGSDNYKCVYCCATFRLERLLELHLQKHIGMYVSDDLSDVTFTNESLTQQIQPKNDIYDVINNTKKPITQHIHKNTHDITTNDSKTRPNDVTNTQQKQSKNDTYDVINNTNEPIKQHIHIDNHDVTTNNSITLHNDVTFTTTQRNQINDTYDVTIITDDLTQYMQTDAHDVTFTNESLAQHSQPQNDTHDVTFTNESLTHIQSLNDTNDVTITINEPLTPYIHNDACDVIINSNESLEQYIQLENDTYDVIINANESITQNIHIDSHDVTFNSNESLTLHIAPLNDTNDVINTNESLTLYNQPLNDTHDVINSNESLTQYIQPLNDTNDVINTNESLTPYNQPLNDTNDVINSNESLTLYNQALNDTNDVINTNESLTLYNQPLNDTNDVINSNESLTLYNQPLNDTNDVINSNDPITQYIQTLNDTNDVIVTNEPITQYIQSINDTNDVINTNDPITQYIQALNGAHDVINTNKAIKQYIQPLNDTNDVINTNDSINQYIQALNGTHDVINTNEPIKQYIQALNGTHDVIATNEPIAQYIQALNGTHDVINTNKAIKQYIQALNVTNDVIDTNEPITQYIQPLNNTHDVTITTNESIPYIESDACDVTVTTKLYTCEVCETTFIIEGLLIQHMQTHIGQPLCACAICDSSFIHDELLRKHMQTHTDAYACNVCDSTFMREELLIHHAQQHTGKKPYKCNECPNSYSHKSKLKIHMRTHTGEKPYACAICDKSFAIKGILTVHMRLHTGKKQFVCEVCRKAFYIKGNLTSHMQTHTGAKPYKCTECASAFVHRSKLKVHMRVHTGEKPYLCTVCGKTFTVLGSLTAHSNIHALKPRPQRTNHAKTDKKHPCTMCNSVFTTHNHLMNHMSRHDSIKPYICAICGRRFAQKFILNDHMHTHTNAKPYTCDICARAFNAKSTLRVHMRTHTSTKEWACQLCESSFSQRKDLTKHMGVHVPVTYACRICTKVFERRVDLKRHIRTHTEGRPFGCVCGDSFGRLEDLRVHKRMHSGEKPFECPLCDCTFGRKGDLTVHVRKHGGAKPYECGDCGCLFRRKEELSAHVQGHVGGKPFRCSICDRTFLYEIRLINHLRKHSETI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01039448;
90% Identity
-
80% Identity
-