Nsal008563.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- Hivep1
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000060.1:422757-424991[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.073 7.1 8.2 6.9 1 23 114 136 114 136 0.97 2 22 0.91 88 4.7 0.5 1 21 142 162 142 164 0.91 3 22 0.00025 0.025 15.9 4.0 1 23 170 192 170 192 0.98 4 22 0.016 1.5 10.3 1.0 1 23 199 221 199 221 0.97 5 22 4.8e-05 0.0047 18.2 2.8 1 23 227 249 227 249 0.97 6 22 0.001 0.1 14.0 1.9 3 23 259 279 257 279 0.98 7 22 2.1e-06 0.0002 22.5 2.5 1 23 285 307 285 307 0.97 8 22 1.1e-05 0.0011 20.2 1.8 2 23 314 335 313 335 0.97 9 22 1.3e-06 0.00013 23.1 1.3 1 23 341 363 341 363 0.98 10 22 1.1e-06 0.00011 23.3 1.8 1 22 369 390 369 390 0.97 11 22 1.4e-05 0.0013 19.9 0.5 2 23 398 419 397 419 0.97 12 22 0.0002 0.019 16.2 0.2 1 23 423 446 423 446 0.98 13 22 0.00013 0.013 16.8 1.3 2 23 453 475 453 475 0.96 14 22 0.00012 0.012 16.9 2.8 1 23 481 503 481 503 0.98 15 22 3e-05 0.0029 18.8 1.8 1 23 509 531 509 531 0.96 16 22 4.3e-06 0.00042 21.5 0.9 1 23 537 559 537 559 0.97 17 22 4.2e-06 0.0004 21.5 2.1 1 23 567 589 567 589 0.98 18 22 3.1e-05 0.003 18.8 0.5 1 23 595 618 595 618 0.97 19 22 2.5e-06 0.00025 22.2 2.0 1 23 624 646 624 646 0.98 20 22 8e-05 0.0078 17.5 1.9 1 23 652 674 652 674 0.96 21 22 0.0055 0.54 11.7 1.5 1 23 681 703 681 703 0.97 22 22 1.3e-05 0.0013 19.9 0.3 2 23 710 731 709 731 0.97
Sequence Information
- Coding Sequence
- ATGGATCCCTTTGAATCGGatcaaaattttgtatctataAAACAAGAGTTTGATTCAGAGGATGAGGGTCCAATTATGTCTATCAGGACACGGGATGAGATTATGGAAGAATCTCGTAGTAATGAAGAATATGCGGTGAAGATAAAAACAGAGCCTACGATAAAAGATGAAATCCAGGATAGCGAATATCTTCACGAAGAGAAAATTCTGAAATCGGAAACCATATTTGCCCCATCTCCTTCATTCGGCGAATTTTCACTAGACGAAACCATCAAACTCGAACCGACCGAAAAAGATGATCTACAAACTCGGATCGCCAATGACCCAACGTATAAGCCCTACTCATGCCACTTATGCCGAAAAACATTTCGCTACCAAAGCAGTAAAATGTTTCACCTGAGACGACATGCCGCCCAGAAGAGATACATTTGCAAAATATGCAAAGTTCCATTTCTCAAATTAGCTGCCCTTGTGTTACATATGAACTGCCACAGAGGTAGGCGACCAtatttttgtccattttgtAAACAATGCTACGCAAGTTCCGGATTTTTAAAACGACATTTAAATACGCATTTGATTAAACGAAAAATGTATTCATGTCGATTTTGTAAACAAGAAATTCGCCGAGCTGTAGATTTACAACGTCATGAATATACCCATACAAATGTCAAAGAATTTGCTTGTCCCAAATGTGGTAAGCGATTTATATGcaatgattatttaaataagcaTATTAAGCGGCATTCGGGTAAACCAAAGAAACGTTATGGCTGTGATATATGTCATAACAAATTCTCAAACACTTCCGTTTTATCCGAACATATGCGTCGACATGCTGGTGAACGGCCATTCGCGTGTAAGATATGCGACAAATCATTCCATGGTAAATCtgatttgaataaacataCACGAATTCACGGTGGCGTACGTAATATACAATGCACAACTTGTGACCGAAAATTTTACACCAAATCCGAGATGACTGTTCACTTAAAAACGCATTCCAACTCAAAGAACTTTAATTGCACACTTTGTGATCGGAAATTTGATTTTCCCTCCGAACTATCACGACACATGCGTATGCACACCGGAGAAAAGCCATTTCCCTgtcaaatttgtaataaaaatttctcgAGTTCATCACATTTATACCGCCACTTGCGAACGAATTGCTCTGAAAATGAACTGAAATGCGAAGTTTGTCAAAAGATCTTTAAACGGCCGGCGTTTTTAGAAAAACACCGCGCAACGCACAACCAAATTTACGAATGCACTCAATGTAATTTGGAAATGTCAAATAACGACGCATTGCGAAGACATATTCGCATTTTACATGCCGATGTAAAAGATCGAACTTGTGAATATtgtaagaaaatattcaaattcagTACTAGTCTTAAAGAACATGTAATGCGCGTTCACACTGGCGAACGCCCATTCCCATGTGGTCAATGCAGCAAGCGTTTCTGTAATTCAACTGCTCTGTCTTATCATGTCAGAACTCACACTGGCGAACGGCCATACTCGTGTGAACAGTGCGATAAAACGTTCACAAAGAAAGTGTTTTTGAAACGCCATTCAGCGATTCATTTTGGTGAGCGACCATTTTTCTGCAAAATATGCCAGGAAACGTTTGTTAGAGAGTCCACGCTCGAAACACATATGCTTAGCCATGGGTTTAACCGAGTTTTAAAGCACGAATGCTCATACTGTGATAAAAAATTCGCTAATAAACGAGTCCTTCTACGTCACATTCGTATTCATACCGACGAACGCCCTTATCCGTGCGAGGGTTGTtcgttaaaatttaaaagtaaagaTGAAATGCAGCGTCACGCTAGAAAAATACATTCGAATAAACGTCCGTTTAAATGTGACGATTGTGTTAAGTGTTTCGCGACTCAGGGCGAACTCAATCGTCATAAGATTACACATTTGGGAATACGACGATATTTGTGTACGAATTGTGATAAGTCGTTTTTGTATTCGAATGAGCTGACGCGGCATATGAAATCACATTCGGACGATGCTATCAAATACTTTTgtcatatttgtaataaagGGTTTAAGGCGAATACGATACTGAAAATACATGTGAAGATACATGAAAACAACGCTAAAACCTCTTGTGATTTTTGTGGTAAAGTTTATCAGAAACCCAGTTATTTAGCAAAGCACATGGCTACTCATATCGAGACGGTTCAGATCAAGGAGTATAATTGTAACGAGTGA
- Protein Sequence
- MDPFESDQNFVSIKQEFDSEDEGPIMSIRTRDEIMEESRSNEEYAVKIKTEPTIKDEIQDSEYLHEEKILKSETIFAPSPSFGEFSLDETIKLEPTEKDDLQTRIANDPTYKPYSCHLCRKTFRYQSSKMFHLRRHAAQKRYICKICKVPFLKLAALVLHMNCHRGRRPYFCPFCKQCYASSGFLKRHLNTHLIKRKMYSCRFCKQEIRRAVDLQRHEYTHTNVKEFACPKCGKRFICNDYLNKHIKRHSGKPKKRYGCDICHNKFSNTSVLSEHMRRHAGERPFACKICDKSFHGKSDLNKHTRIHGGVRNIQCTTCDRKFYTKSEMTVHLKTHSNSKNFNCTLCDRKFDFPSELSRHMRMHTGEKPFPCQICNKNFSSSSHLYRHLRTNCSENELKCEVCQKIFKRPAFLEKHRATHNQIYECTQCNLEMSNNDALRRHIRILHADVKDRTCEYCKKIFKFSTSLKEHVMRVHTGERPFPCGQCSKRFCNSTALSYHVRTHTGERPYSCEQCDKTFTKKVFLKRHSAIHFGERPFFCKICQETFVRESTLETHMLSHGFNRVLKHECSYCDKKFANKRVLLRHIRIHTDERPYPCEGCSLKFKSKDEMQRHARKIHSNKRPFKCDDCVKCFATQGELNRHKITHLGIRRYLCTNCDKSFLYSNELTRHMKSHSDDAIKYFCHICNKGFKANTILKIHVKIHENNAKTSCDFCGKVYQKPSYLAKHMATHIETVQIKEYNCNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039441;
- 90% Identity
- iTF_01039441;
- 80% Identity
- -