Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000020.1:935450-941452[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 4.1e-06 0.0004 21.5 4.2 1 23 166 188 166 188 0.98

2 32 1.8e-07 1.7e-05 25.8 2.5 1 23 194 217 194 217 0.97

3 32 0.033 3.2 9.3 0.2 1 23 223 245 223 245 0.97

4 32 0.00012 0.012 16.9 0.2 1 23 251 273 251 273 0.98

5 32 0.0051 0.49 11.8 2.1 1 23 279 301 279 301 0.96

6 32 1e-05 0.001 20.3 0.3 1 23 307 329 307 329 0.98

7 32 1.5 1.5e+02 4.0 0.1 1 12 335 346 335 348 0.89

8 32 0.0019 0.18 13.2 1.7 1 21 463 483 463 484 0.92

9 32 1.2e-05 0.0012 20.1 0.7 1 23 528 551 528 551 0.98

10 32 0.0008 0.078 14.3 2.1 1 23 587 609 587 609 0.98

11 32 4.1e-05 0.004 18.4 0.2 1 23 615 638 615 638 0.97

12 32 3.4e-05 0.0033 18.6 0.2 1 23 644 666 644 666 0.98

13 32 5.8e-06 0.00056 21.1 0.5 1 23 672 694 672 694 0.98

14 32 0.0013 0.13 13.7 0.6 1 23 700 722 700 722 0.97

15 32 4.7e-06 0.00045 21.4 1.8 1 23 728 750 728 750 0.98

16 32 2.9e-05 0.0028 18.9 2.2 1 23 756 779 756 779 0.95

17 32 0.00013 0.012 16.9 3.8 1 23 883 906 883 906 0.96

18 32 0.13 12 7.4 1.1 1 23 939 961 939 961 0.97

19 32 6.6e-06 0.00065 20.9 1.6 1 23 967 990 967 990 0.95

20 32 0.00034 0.033 15.5 0.1 1 23 996 1018 996 1018 0.98

21 32 4.2e-05 0.0041 18.4 1.6 1 23 1024 1046 1024 1046 0.91

22 32 0.0031 0.3 12.5 0.5 1 19 1052 1070 1052 1074 0.95

23 32 0.0002 0.019 16.2 0.5 1 23 1080 1102 1080 1102 0.98

24 32 0.075 7.3 8.1 0.0 3 23 1213 1233 1211 1233 0.95

25 32 0.00028 0.027 15.8 1.7 3 23 1273 1293 1272 1293 0.98

26 32 3.1 3e+02 3.0 5.9 2 23 1335 1356 1334 1356 0.96

27 32 0.00022 0.022 16.1 1.3 1 23 1361 1383 1361 1383 0.95

28 32 2.3e-05 0.0022 19.2 1.9 1 23 1387 1409 1387 1409 0.99

29 32 6.7e-05 0.0065 17.7 2.3 1 23 1414 1436 1414 1436 0.97

30 32 1.1e-05 0.0011 20.2 1.7 1 23 1442 1464 1442 1464 0.99

31 32 0.98 95 4.6 2.2 2 23 1471 1493 1470 1493 0.95

32 32 0.87 85 4.8 0.3 2 20 1495 1513 1495 1517 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	4.1e-06	0.0004	21.5	4.2	1	23	166	188	166	188	0.98
2	32	1.8e-07	1.7e-05	25.8	2.5	1	23	194	217	194	217	0.97
3	32	0.033	3.2	9.3	0.2	1	23	223	245	223	245	0.97
4	32	0.00012	0.012	16.9	0.2	1	23	251	273	251	273	0.98
5	32	0.0051	0.49	11.8	2.1	1	23	279	301	279	301	0.96
6	32	1e-05	0.001	20.3	0.3	1	23	307	329	307	329	0.98
7	32	1.5	1.5e+02	4.0	0.1	1	12	335	346	335	348	0.89
8	32	0.0019	0.18	13.2	1.7	1	21	463	483	463	484	0.92
9	32	1.2e-05	0.0012	20.1	0.7	1	23	528	551	528	551	0.98
10	32	0.0008	0.078	14.3	2.1	1	23	587	609	587	609	0.98
11	32	4.1e-05	0.004	18.4	0.2	1	23	615	638	615	638	0.97
12	32	3.4e-05	0.0033	18.6	0.2	1	23	644	666	644	666	0.98
13	32	5.8e-06	0.00056	21.1	0.5	1	23	672	694	672	694	0.98
14	32	0.0013	0.13	13.7	0.6	1	23	700	722	700	722	0.97
15	32	4.7e-06	0.00045	21.4	1.8	1	23	728	750	728	750	0.98
16	32	2.9e-05	0.0028	18.9	2.2	1	23	756	779	756	779	0.95
17	32	0.00013	0.012	16.9	3.8	1	23	883	906	883	906	0.96
18	32	0.13	12	7.4	1.1	1	23	939	961	939	961	0.97
19	32	6.6e-06	0.00065	20.9	1.6	1	23	967	990	967	990	0.95
20	32	0.00034	0.033	15.5	0.1	1	23	996	1018	996	1018	0.98
21	32	4.2e-05	0.0041	18.4	1.6	1	23	1024	1046	1024	1046	0.91
22	32	0.0031	0.3	12.5	0.5	1	19	1052	1070	1052	1074	0.95
23	32	0.0002	0.019	16.2	0.5	1	23	1080	1102	1080	1102	0.98
24	32	0.075	7.3	8.1	0.0	3	23	1213	1233	1211	1233	0.95
25	32	0.00028	0.027	15.8	1.7	3	23	1273	1293	1272	1293	0.98
26	32	3.1	3e+02	3.0	5.9	2	23	1335	1356	1334	1356	0.96
27	32	0.00022	0.022	16.1	1.3	1	23	1361	1383	1361	1383	0.95
28	32	2.3e-05	0.0022	19.2	1.9	1	23	1387	1409	1387	1409	0.99
29	32	6.7e-05	0.0065	17.7	2.3	1	23	1414	1436	1414	1436	0.97
30	32	1.1e-05	0.0011	20.2	1.7	1	23	1442	1464	1442	1464	0.99
31	32	0.98	95	4.6	2.2	2	23	1471	1493	1470	1493	0.95
32	32	0.87	85	4.8	0.3	2	20	1495	1513	1495	1517	0.90

Sequence Information

Coding Sequence: ATGAGCGACGAATTATCCGGCGGCGAGTTAATTTCCGCCGAAGAGCCAATAATTCACCTCACGGAGAATGGCATCGAGGGTTTCGAAATCTTGTGTCGCCTTTGCGCGAACAGCAGCGATCATTTGATTTCGATCTACAGCGAGGAAGGCGTCACCAATGATCTAGCGgagaaaatgaatttatatctACCGGTAAAAGTCCACAAAACGGATATTTTACCGCTGCAATGTTGTTTCCAATGCGCCAGCACCGTCTTGGCTTGGCACGAGCTGGTGGTCGCCAGCGTAGAAGCCGATCGAAGATTGCGTGATATACAATTTGAAGTTGAGAAACAATTAGCTGGTGATGAACTTCCTCAAGAAGTTACCGAACCCAGCACTTCACAGACGGACGAAGTTGAGCAGAATGGACAACAAGAACCTGAttCAAAAAccactgaaataaataatacatctAAAACAACTTCCGAAAACTCggaaacgaaaaaaaaaactcataaaTGTCATGAATGCCAAAAAACTTTCATCCAAAAACCCTCACTCATCCGCCACTTACGGATACACCGTAACGAGCGACCATACACATGCCACGTATGCGGCAAAGGATTCCGCGATCAAAGTGGTCTAAACCGCCACATACGTCACGTTCATATCCGCGTAAAATCGTTCGCATGCGATATCTGCAACAATTCGTTCGCATCGGCTGCCACTCGTGATGATCACCGCCGCCGCCACACGAAAGAGCGTCCGTTCGTTTGTCAAGAGTGCGGTAAACGGTTTGGAGCGAAAGCCAGCTTATTTATACACGCCAAAACGCACAATGATGTGTTTCCGTTTGCGTGTTGCGTTTGCGCGAAACGCTTCCGTCGTCGCCAGGAGTTGATCGTGCATTCGTCAACGCACACGGGACAAAAGTCGTACCAGTGCGAAGATTGTGGTCGCACGTTTCGAATTAGAAGCTTATTGGTTAGTCATCGATTAGTCCATACTGATTTGAAACCGTTTGTTTGTGAGATATGTGGGGTGAGGTATAAGCAGTTGAGGCGAAACGACACCGCAAGTCTGAGTCCATTTCGCCAAGACGACGTTGAAGTGAAGCTAGTCATTCCATCCACTATCACCCCACCTAGAAAACGTGGCCGTAAACCCAAACATCAAACGCAAGAAAATAAAGACGACACCGTCAAACTTGAACCGTCTGTCAGCGACACGGATGGCCAATGGATTAAAACCGAACTAGTAATGGAACCAGACGACGCCATCAATCCGTTCATTGCAGATTGCGAATTAACAGAGGACATGGATGTGAAAATAAGTCCACCCATCTCTGATTCCGATGACTTAGATCCCGAATACGATCCTGGTAACGAAACCAAAGTGAAAACACACCATTGCGCCACTTGCGGCAAATCATTTCGGAAAATCGTCCAATTACGACGGCATGAAAAGTTATGCTCTAGTGAGTTGAAAGAAGAATTATTTAAGGAAGAGTATCTAGATGGCGATTTAGATGATTTGGATAGAGACCCAATGGATGAGTTTCAAGATGCGGAAATATTTGAGCGAAAAGTCAAACGGGAATATCGGTGTGATTACTGCCCGAAAATGACGGTACGCCGTGAGGATTTGAAGGATCATGTCCGGACGACTCACCCAGAAAAATTCGAGAGTTTTTCAATGCAACGGCAACGGAAACGCAGTAAAATCGACCAAGAAGCGGTGAACCGCGCTAAAGTCGTGGTGGACTCGCGTACTTATTACCATTGCAGTGATTGCGGTAAAAATCTCCACTCGCCGTACACGTACATCTGGCATATTCGCATACACACCGGCGAGCGACCATACGTGTGTGATTTATGCGGTAAACAATTTCGTGTTTCACAAGGTTTAGTGCGACACCTACGCGAAACACACGCCGGCATCAAGAACTTCCCATGCGATCTATGCGGTCGCATGTTTGCGACAAGGCGTAACGTTGAAGAGCACAGGCGTATCCACACGAATGAACGCCCGTATATTTGTGACTTGTGCGGCAAAGCTTTCAAACAAAAGGCATCGTTGTTCGTGCACAATCGCTCGCATACGGATAGTTTCCCGTTTAAATGCAGCTATTGCAATCAAGGTTTTCGAACACGACCGCCATTGTTAGTTCACGTGACGCGACACACGGGCGAAAAACCGTACCCGTGTGATATTTGCGGGCGGTGTTTTCGCATTAAATATGAGCTGAAGCGGCATAGATTAATCCACTCGGATGATAAACCGTTTAGTTGTACGGATTGCGGATTGAGTTTTCGACAGAAACGGTACTTGAGGaatcacaataaaattaatcataatcGGCCGACGCCATTAAACCCCAATCAACAACAGAAAACGGAAGACTCTAACGTGTTAACACATTTCTTGGACCAAAAGACTCATGTAGATATAAGTACACCAAAACTCCAAgaaacaaaaactaataagTCCAATAATTTAAACTACCTTATAGtagtaaaactaaataaacttcaaaacGACCAGAAAGCAATTGAACAAACTAACGACACCAACATTGAAGCTCCACTAGTTAAAAAAGAGCATAAAAATCAAAGCGAGTCGAAAAAGCGGCTACGCCGCAAAAAAGCTGAAATATACGCGGaatatttttgtgatatttgcgACCGCGGCTTCACCCGCAAACACGACATGCAAAAACACCGCTTAAAGCAACACCAAAACGCACCGACTTTAATAGATATTGAGCAAAAGAGTAAATACGACGAGCTTTTGAGCCGCTGCAAAGAAATTGATGCGGATGGGAAAGTTAATTATAAGTGTGAAATTTGTcacaaattaatacaattgCCGAATAGTTTTATTCGCCACCAATCAATACATACAGGTGTACGGCCGTATTTTTGTCATATATGCGGTAAAAGCTTCCGCTTAGCGAACACTTTAACGCGACATATTAACGAGCTGCATTATGGGCAGAAGAACTATGAGTGCGATGTGTGCGGTCGGAAGTTTGCGGCGAAGGTAACACTAGAGGAGCATAAGAATATCCATACGAATGCGCGACCGTTTGTTTGCGATGTTTGCGGGAAGTCGTTCAAGCAAAAAGCGAGTTTGCATATACATAAAGTGTTTCACACGAATGTGTTTCGATTTTCGTGTTCGGTTTGCGGGAAAAAATATCGGCGTGGTCGTGATTTGAAAGTGCATAGCTGGATACATACTGGACATCGGCCGTATGCTTGCGATACTTGTGGTAGTATGTTTCGCCTATCGCAAGATTTAAAGCGGCACTTAAAGGTGCATAATAAACCTACGGGCGTTTTTGTTTGCGTATTtctaaaATACGATGCGCTATGGTCTGAAAACCAATTATATTTCTGTGATAAATGCCCGTTCATCAGCCAACACAAAACCAAATTCGACGATCACATTTGCAAACCCAAAATTCCAAACGAATCCAAAAAACAAACCCCCACATCTTCCAACAAAACAGACGCAACTAAACAGAAACCACACAAAGAAAGTGGCGTAAcaacaaacataaaacaaCCAACATCACTAAAACTGATTAAAACGGCAAATAAATCAGAATCAACATGGATAGATAATCCAGATGTAATCATAAGTATCATTTGTGATGAATGTGACTCTGAATTTAACACCATAAATGAGTTAGCCGCACATAAAGAGTCACATAAACCTGCTAAAGAAACCACAtgtgatattaaattaaaagcgGATTCAGATAAAAAATCACATGATGTTTCAAAACCAGCGTCAAAAAACGAATCAGCCGAAACTTTGCAAAAAAATTGCCAAATATGTGATAAACTATTCATGAAACTCGCTCATTTAAAAGTACACATACGAACGCACATATTAGACAAATATTGCTATGTTTGTTGTAACAGTTACAACAGTCAATTAAAGTTAGATCAACATAAATCGCAACACACTGAAGCCGATTTAGCTCAATATAAAACGGACCCAGCGTTCGTCCAGTGTTCGTATTGCGTTGAGAAGTTTTGCTCGAAACTAAAACTATATGATCACTGTCGCACGCACGATTACGGCGAATATGCTTGCAATAAATGTCCGAAAAAATTCAACAACTACCGCAGCCTTAACGCCCATAAAGGCTCACATAACATCCTCTACAAATGTAAAGAATGCGATAAATTATTCGCAGTCAAACAAACGCTATTCCAACACTTGCGGACTCACCAAGAAAAATCGTTCGAGTGTAATATTTGCAGTAAGAAATTTCGCTATcgaaataatttgaaagaacACGAAACCATGCATAATATGTTGAAGAAATATAAATGCGATATTTGTAAGCAGCGCTTTGCGcgtttgaattatttgaaaacGCATTTGAGGATTCATTTCAATGATAAGCCGGTGACGTGTGAATATTGTGCGTGTACTTTTACGCAAATTAGCGTTAAGAATACGCATGTGAGGAGTAAACATCGCGTTTGTACGGTTTGTAATCAAATCGTTGGTGATTCGTTGCAATTGAGAGTACATATGTGGAAGCATCATCCCGAAAATGATCATTCTGAAGATGTCGAATATATTGATTAA
Protein Sequence: MSDELSGGELISAEEPIIHLTENGIEGFEILCRLCANSSDHLISIYSEEGVTNDLAEKMNLYLPVKVHKTDILPLQCCFQCASTVLAWHELVVASVEADRRLRDIQFEVEKQLAGDELPQEVTEPSTSQTDEVEQNGQQEPDSKTTEINNTSKTTSENSETKKKTHKCHECQKTFIQKPSLIRHLRIHRNERPYTCHVCGKGFRDQSGLNRHIRHVHIRVKSFACDICNNSFASAATRDDHRRRHTKERPFVCQECGKRFGAKASLFIHAKTHNDVFPFACCVCAKRFRRRQELIVHSSTHTGQKSYQCEDCGRTFRIRSLLVSHRLVHTDLKPFVCEICGVRYKQLRRNDTASLSPFRQDDVEVKLVIPSTITPPRKRGRKPKHQTQENKDDTVKLEPSVSDTDGQWIKTELVMEPDDAINPFIADCELTEDMDVKISPPISDSDDLDPEYDPGNETKVKTHHCATCGKSFRKIVQLRRHEKLCSSELKEELFKEEYLDGDLDDLDRDPMDEFQDAEIFERKVKREYRCDYCPKMTVRREDLKDHVRTTHPEKFESFSMQRQRKRSKIDQEAVNRAKVVVDSRTYYHCSDCGKNLHSPYTYIWHIRIHTGERPYVCDLCGKQFRVSQGLVRHLRETHAGIKNFPCDLCGRMFATRRNVEEHRRIHTNERPYICDLCGKAFKQKASLFVHNRSHTDSFPFKCSYCNQGFRTRPPLLVHVTRHTGEKPYPCDICGRCFRIKYELKRHRLIHSDDKPFSCTDCGLSFRQKRYLRNHNKINHNRPTPLNPNQQQKTEDSNVLTHFLDQKTHVDISTPKLQETKTNKSNNLNYLIVVKLNKLQNDQKAIEQTNDTNIEAPLVKKEHKNQSESKKRLRRKKAEIYAEYFCDICDRGFTRKHDMQKHRLKQHQNAPTLIDIEQKSKYDELLSRCKEIDADGKVNYKCEICHKLIQLPNSFIRHQSIHTGVRPYFCHICGKSFRLANTLTRHINELHYGQKNYECDVCGRKFAAKVTLEEHKNIHTNARPFVCDVCGKSFKQKASLHIHKVFHTNVFRFSCSVCGKKYRRGRDLKVHSWIHTGHRPYACDTCGSMFRLSQDLKRHLKVHNKPTGVFVCVFLKYDALWSENQLYFCDKCPFISQHKTKFDDHICKPKIPNESKKQTPTSSNKTDATKQKPHKESGVTTNIKQPTSLKLIKTANKSESTWIDNPDVIISIICDECDSEFNTINELAAHKESHKPAKETTCDIKLKADSDKKSHDVSKPASKNESAETLQKNCQICDKLFMKLAHLKVHIRTHILDKYCYVCCNSYNSQLKLDQHKSQHTEADLAQYKTDPAFVQCSYCVEKFCSKLKLYDHCRTHDYGEYACNKCPKKFNNYRSLNAHKGSHNILYKCKECDKLFAVKQTLFQHLRTHQEKSFECNICSKKFRYRNNLKEHETMHNMLKKYKCDICKQRFARLNYLKTHLRIHFNDKPVTCEYCACTFTQISVKNTHVRSKHRVCTVCNQIVGDSLQLRVHMWKHHPENDHSEDVEYID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -