Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000060.1:754466-758792[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 35 0.00017 0.016 16.5 5.2 1 23 10 32 10 32 0.98

2 35 3.3e-05 0.0032 18.7 1.1 1 23 63 85 63 85 0.98

3 35 0.0076 0.74 11.3 1.1 1 21 96 116 96 117 0.94

4 35 7.6e-05 0.0074 17.6 7.6 1 23 124 146 124 146 0.99

5 35 0.00015 0.014 16.7 0.2 3 23 154 175 152 175 0.95

6 35 3.9e-06 0.00038 21.6 4.7 1 23 183 205 183 205 0.98

7 35 0.0012 0.12 13.8 0.6 1 23 214 236 214 236 0.97

8 35 1.8e-05 0.0018 19.5 0.0 1 23 241 263 241 263 0.98

9 35 3.5e-05 0.0034 18.6 0.5 1 23 269 291 269 291 0.94

10 35 2.8e-06 0.00027 22.1 0.8 1 23 297 319 297 319 0.98

11 35 0.002 0.2 13.1 2.4 1 23 325 347 325 347 0.98

12 35 0.36 35 6.0 3.6 2 23 409 430 408 430 0.91

13 35 1.5e-05 0.0014 19.8 0.4 1 21 441 461 441 462 0.94

14 35 0.00023 0.023 16.0 7.9 2 23 470 491 469 491 0.97

15 35 0.00055 0.053 14.9 0.1 2 23 498 520 497 520 0.94

16 35 7.6e-06 0.00074 20.7 6.2 1 23 527 549 527 549 0.99

17 35 2.9e-05 0.0028 18.9 3.0 1 23 558 580 558 580 0.98

18 35 0.00011 0.01 17.1 0.2 1 23 585 607 585 607 0.98

19 35 0.00033 0.032 15.5 2.6 1 23 613 635 613 635 0.96

20 35 4.4e-07 4.3e-05 24.6 0.3 1 23 641 663 641 663 0.97

21 35 0.00014 0.014 16.7 2.0 1 23 669 691 669 691 0.98

22 35 5.5e-05 0.0054 18.0 2.0 2 23 715 736 714 736 0.97

23 35 0.0067 0.65 11.4 3.6 2 23 742 763 741 763 0.90

24 35 0.00013 0.012 16.8 2.9 1 23 769 791 769 791 0.97

25 35 0.003 0.29 12.5 3.0 1 23 797 820 797 820 0.97

26 35 8.3e-06 0.0008 20.6 1.7 1 23 825 847 825 847 0.98

27 35 0.41 39 5.8 0.3 1 21 858 878 858 879 0.94

28 35 1e-05 0.00098 20.3 5.2 1 23 887 909 887 909 0.98

29 35 0.00016 0.016 16.5 1.0 2 23 916 938 915 938 0.97

30 35 0.00011 0.011 17.0 0.9 3 23 945 965 943 965 0.96

31 35 0.00021 0.02 16.2 1.4 1 23 974 996 974 996 0.98

32 35 3.9e-05 0.0038 18.5 0.1 1 23 1001 1023 1001 1023 0.98

33 35 3.9e-05 0.0038 18.5 0.3 1 20 1029 1048 1029 1051 0.93

34 35 6.2e-08 6.1e-06 27.3 2.4 1 23 1057 1079 1057 1079 0.98

35 35 1.4e-05 0.0013 19.9 4.7 1 23 1085 1107 1085 1107 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	35	0.00017	0.016	16.5	5.2	1	23	10	32	10	32	0.98
2	35	3.3e-05	0.0032	18.7	1.1	1	23	63	85	63	85	0.98
3	35	0.0076	0.74	11.3	1.1	1	21	96	116	96	117	0.94
4	35	7.6e-05	0.0074	17.6	7.6	1	23	124	146	124	146	0.99
5	35	0.00015	0.014	16.7	0.2	3	23	154	175	152	175	0.95
6	35	3.9e-06	0.00038	21.6	4.7	1	23	183	205	183	205	0.98
7	35	0.0012	0.12	13.8	0.6	1	23	214	236	214	236	0.97
8	35	1.8e-05	0.0018	19.5	0.0	1	23	241	263	241	263	0.98
9	35	3.5e-05	0.0034	18.6	0.5	1	23	269	291	269	291	0.94
10	35	2.8e-06	0.00027	22.1	0.8	1	23	297	319	297	319	0.98
11	35	0.002	0.2	13.1	2.4	1	23	325	347	325	347	0.98
12	35	0.36	35	6.0	3.6	2	23	409	430	408	430	0.91
13	35	1.5e-05	0.0014	19.8	0.4	1	21	441	461	441	462	0.94
14	35	0.00023	0.023	16.0	7.9	2	23	470	491	469	491	0.97
15	35	0.00055	0.053	14.9	0.1	2	23	498	520	497	520	0.94
16	35	7.6e-06	0.00074	20.7	6.2	1	23	527	549	527	549	0.99
17	35	2.9e-05	0.0028	18.9	3.0	1	23	558	580	558	580	0.98
18	35	0.00011	0.01	17.1	0.2	1	23	585	607	585	607	0.98
19	35	0.00033	0.032	15.5	2.6	1	23	613	635	613	635	0.96
20	35	4.4e-07	4.3e-05	24.6	0.3	1	23	641	663	641	663	0.97
21	35	0.00014	0.014	16.7	2.0	1	23	669	691	669	691	0.98
22	35	5.5e-05	0.0054	18.0	2.0	2	23	715	736	714	736	0.97
23	35	0.0067	0.65	11.4	3.6	2	23	742	763	741	763	0.90
24	35	0.00013	0.012	16.8	2.9	1	23	769	791	769	791	0.97
25	35	0.003	0.29	12.5	3.0	1	23	797	820	797	820	0.97
26	35	8.3e-06	0.0008	20.6	1.7	1	23	825	847	825	847	0.98
27	35	0.41	39	5.8	0.3	1	21	858	878	858	879	0.94
28	35	1e-05	0.00098	20.3	5.2	1	23	887	909	887	909	0.98
29	35	0.00016	0.016	16.5	1.0	2	23	916	938	915	938	0.97
30	35	0.00011	0.011	17.0	0.9	3	23	945	965	943	965	0.96
31	35	0.00021	0.02	16.2	1.4	1	23	974	996	974	996	0.98
32	35	3.9e-05	0.0038	18.5	0.1	1	23	1001	1023	1001	1023	0.98
33	35	3.9e-05	0.0038	18.5	0.3	1	20	1029	1048	1029	1051	0.93
34	35	6.2e-08	6.1e-06	27.3	2.4	1	23	1057	1079	1057	1079	0.98
35	35	1.4e-05	0.0013	19.9	4.7	1	23	1085	1107	1085	1107	0.99

Sequence Information

Coding Sequence: ATGCACCTCCATGCGGGGACGAGGACGTTTACCTGTAAACATTGTGATAAAAAATTCCGTTTGGTGAACCAACTGAAACGACACGAACAGACGCATGTGATACCGTGCACGAAATGCACTTTAATGTTTtctaatcatttaaaatatcgtGAACACTGCAAAGAAACTCACCAAAATGATTCGGAATATAAATGCTTGGACTGTAATCGAGTTTTTGCGCATGCGACTGGgcttaaaatacatttatcaaAACATGACCCACTGCTAATGAAAAATCTAGTTACTCATTCTTGCGATAAATGCCGCAAAGTGTTCACAGTATATCAAGATTTGGAAATGCACACGAAAAATAAGTGTGTTGATATACAGTACAAGTGTGAACATTGTccaaaaatgttcaaatataaacACTACTTAAGAGTTCACAGCCGTAGACACACTAATAATTATGTGGTGATTTGTAAAGATTGCAATAAAGGTTTTTATACGTGGCGCGAGTATCGTGTTCACGTCCAAGTATCACATACGATCCAGAACAAAACACAGTTCAAATGTGACCACTGCCCGAAAACATTCTCGCAAAAAGCTTACTATACACGACATCTAAAACTACACGACCCAGATAAGCTTTTACGCGAATATATCTGCCCAATATGTGAACAAAAGTTTCACAATCGGGATACATGGCGTGTTCACGTTGCTCGACATAGAAAcactgtgtttgtgtgtgacgTTTGCGGCAAAACTGTGACGAGTGCAGCAAGTTTGAGAGACCATGCTCGTGTTCACACTGGGGCGAAACCGTTTGCATGTGGAACTTGTGGAAAGACGTTCCGGACAAAGAATTTGTTACGTATTCACGAGGTGTCCCATTTGAGTGATAAACCTTATATTTGTAATGTGTGTGACAAAAGGTTTACACAAATTGGCAGCTTAACAGTACACCGAAGGAAACACACTGGAGAGCGACCTTACCCTTGTGATATTTGCCAAATGCGGTTTTATACAAAAACGCTAATGAAAACACACTTTAAATCTCATGGTGTATCATCTGATTTAGATCCAGTTTATTTGTCATCCATTACTAAAGTAACTCAGGAATCTCTTGACAGGGCGAAGACTTCTGTGTTCATAAAACCGACAGTATACGATCGTCACTACACAAAATTGATCGAAGATTCTAAACGAACTGAACAACCACTAATTAAAACCGACCAAAAACTAACttgtaaatattgttcaaaaatatttaaaactgaaCGAGCTCACAAACTGCATACGTCATCGCATGATCCGCTTTTCGTTCGCAAAATTAAAAAGCATATCTGCGAAAAATGCGgaaaagaatttaaaagacccatagatttaaaattgcaCATGAAAAACAACTGTGTCGATGAAATCCTCAAATGTGAATACTGTGCCAAAACATTCAAACACCGCTATTATTTGAAACATCACACACGTCGACATACGGACAGCTTCGTTGTAGTCTGTAAAGATTGCGGTAAAGGTTTTATAACAATGGGCGAATATCGTGTTCACGTGAAAGGAACACATGCCAAAATACCAGCGAGCTACCGATGTGAACACtgtcaaaaaatattttcgcaaaaagaCTACTATAAGAAACACTTGAAAACTCACGATCCTCATGCCGTGGTTATTGAGTACACGTGTTCACATTGTCAGAAAATGTTCACCAATCGTGACAATTGGCGAATGCATGTGGCAAGACACGAAAATCATTCTTTTGTGTGTTATGTATGCGGGAAAAATTTAACAACTTTAGCTAGTTTGAAGGATCATGTTCGCGTTCACACTGGAGATAAACCATTTTGTTGTGCATCGTGCGGGAAAACTTTCAGGACGAAAAAATTACTGGACACTCATGTAGCGACGCACATCAACGAGAAGAGGTTTATTTGTGCTGTATGCGGAAAGAGTTTTACGCAACAAAGTACTTTAATAGTACATCGGCGACTTCACACTGGTGAACGTCCGTATGCTTGTGATATTTGTCAAAAGCGTTTTTATACGAAAACTTTAATGAAAACTCATGTTAAATCTCACGTTGTCGCTGTAGCtcaaCTTACTCAACAAGAATCTCTTGACAGGAAGAAGACAACTGCAGCACGTCTTAAATGCGAAATATGCTCGAAGCAATTCCCTGATCGCACCAAACTTAACAAACATAAACGTTCGCACATGCCACGGAATCAATCATGTAAATATTGCGATAAAAAGTTCCACTTCAAAAATCAATTACGAACGCACGAAGTGGCGCACAGTGACGACAAAACGTTTGCTTGCAACCAGTGCGACAAAAAGTTCAAGACTAAGAAGAGTTTGGATATGCACGAGAAACGCCACACGAACGACTACAAATTCAAGTGTCTCGAATGCGACAAAGGCTTCTACGACAAACATATTTATCGCAAACATATTAAAGTAAATCACGTTGGATTTCGACACAAGTGCAATGAATGTGGTAAAGCATTTAAAACTCCTATTTCGTTTAAGCTCCATGTCCAGTCACACGATCCCAATTTTGTGAAACCAGCCAAAAAACACCAATGCGATGTGTGCATGAAGGTGCTTCGCACTGCTCTTGATTTGACCACgcacaaaaacaacaattgcGTCGACGCACTGATTTATAATTGTGAAATTTGCgagaaaaaattcaaacacagATATAACTTGAATCTACACCGTCGAAGACACACAACCAATTACGTAGTGAAATGTGAACATTGCGATAAAGGGTTCTTCACAACAAGTGAATATTACGACCACATTCGCGTTGTTCACACAAAGGAACGCATCAACTGTGTGCATTGTCCGAAAACATTTGCGACCCAAGCCAATTACGGACGACATTTAAAACTGCATGACCCGAACATGCATTTGCTCGAATATACATGTCCGAAGTGCGagaaaatgtttcataatCGAGACGCTTGGCGAACACACGTTGCTAGACATGACAACAACGCCTTCGTGTGTTATGTCTGCGGAAAAACATTAACCACCGCCGCTAGTTTGAGGGACCATGCCCGCGTTCACACTGGCGATAAACCGTTCCCGTGTACCACATGTGGAAAAAGATTTCGAACGGCGAATTTATTGAAGATTCATCAACCAATTCACAAGAATGAGAAGCCGTATATTTGTAGCGAATGCGGCAAATGTTTCACTCAACAAAGCAGCTTGACGGTGCATCGCCGCATACACACGGGCGAACGCCCCTACCCGTGTGATATCTGTCACAAACGGTTTTATACGAAAACTTTAATGAAAACCCATATGAAAACTCATGGTTTATCTATGGCTGATgtgttttaa
Protein Sequence: MHLHAGTRTFTCKHCDKKFRLVNQLKRHEQTHVIPCTKCTLMFSNHLKYREHCKETHQNDSEYKCLDCNRVFAHATGLKIHLSKHDPLLMKNLVTHSCDKCRKVFTVYQDLEMHTKNKCVDIQYKCEHCPKMFKYKHYLRVHSRRHTNNYVVICKDCNKGFYTWREYRVHVQVSHTIQNKTQFKCDHCPKTFSQKAYYTRHLKLHDPDKLLREYICPICEQKFHNRDTWRVHVARHRNTVFVCDVCGKTVTSAASLRDHARVHTGAKPFACGTCGKTFRTKNLLRIHEVSHLSDKPYICNVCDKRFTQIGSLTVHRRKHTGERPYPCDICQMRFYTKTLMKTHFKSHGVSSDLDPVYLSSITKVTQESLDRAKTSVFIKPTVYDRHYTKLIEDSKRTEQPLIKTDQKLTCKYCSKIFKTERAHKLHTSSHDPLFVRKIKKHICEKCGKEFKRPIDLKLHMKNNCVDEILKCEYCAKTFKHRYYLKHHTRRHTDSFVVVCKDCGKGFITMGEYRVHVKGTHAKIPASYRCEHCQKIFSQKDYYKKHLKTHDPHAVVIEYTCSHCQKMFTNRDNWRMHVARHENHSFVCYVCGKNLTTLASLKDHVRVHTGDKPFCCASCGKTFRTKKLLDTHVATHINEKRFICAVCGKSFTQQSTLIVHRRLHTGERPYACDICQKRFYTKTLMKTHVKSHVVAVAQLTQQESLDRKKTTAARLKCEICSKQFPDRTKLNKHKRSHMPRNQSCKYCDKKFHFKNQLRTHEVAHSDDKTFACNQCDKKFKTKKSLDMHEKRHTNDYKFKCLECDKGFYDKHIYRKHIKVNHVGFRHKCNECGKAFKTPISFKLHVQSHDPNFVKPAKKHQCDVCMKVLRTALDLTTHKNNNCVDALIYNCEICEKKFKHRYNLNLHRRRHTTNYVVKCEHCDKGFFTTSEYYDHIRVVHTKERINCVHCPKTFATQANYGRHLKLHDPNMHLLEYTCPKCEKMFHNRDAWRTHVARHDNNAFVCYVCGKTLTTAASLRDHARVHTGDKPFPCTTCGKRFRTANLLKIHQPIHKNEKPYICSECGKCFTQQSSLTVHRRIHTGERPYPCDICHKRFYTKTLMKTHMKTHGLSMADVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039436;
90% Identity: iTF_01039436;
80% Identity: -