Nsal008621.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria salina
Gene Symbol
-
Assembly
GCA_944039265.1
Location
CALUEJ010000060.1:748442-753982[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 51 0.0049 0.48 11.9 0.2 2 23 16 37 15 37 0.95
2 51 2.6e-06 0.00026 22.1 2.8 1 23 77 99 77 99 0.99
3 51 2.1e-05 0.0021 19.3 1.3 2 23 106 128 105 128 0.97
4 51 0.0014 0.13 13.6 4.5 3 23 135 155 133 155 0.96
5 51 0.0015 0.14 13.5 0.6 1 23 164 186 164 186 0.98
6 51 0.00032 0.031 15.6 0.2 1 23 191 213 191 213 0.98
7 51 0.00097 0.095 14.1 0.9 1 20 219 238 219 241 0.91
8 51 2.3e-06 0.00023 22.3 0.7 1 23 247 269 247 269 0.93
9 51 0.0012 0.12 13.8 1.1 1 23 291 313 291 313 0.98
10 51 5.1 5e+02 2.4 0.0 1 19 321 339 321 341 0.83
11 51 3.3e-05 0.0032 18.7 1.6 1 23 349 371 349 371 0.98
12 51 1.2e-05 0.0012 20.0 0.9 2 23 378 400 377 400 0.97
13 51 0.031 3 9.3 0.2 3 23 407 427 405 427 0.94
14 51 9.7e-06 0.00094 20.4 0.4 1 23 436 458 436 458 0.97
15 51 0.00087 0.085 14.2 0.0 1 23 463 485 463 485 0.98
16 51 2e-05 0.0019 19.4 0.7 1 23 491 513 491 513 0.97
17 51 1.6e-05 0.0016 19.7 1.7 1 23 519 541 519 541 0.97
18 51 0.049 4.7 8.7 9.6 1 23 547 569 547 569 0.99
19 51 0.0025 0.24 12.8 2.3 2 23 594 615 593 615 0.97
20 51 0.24 23 6.6 5.1 2 23 621 642 620 642 0.89
21 51 3.3e-05 0.0032 18.7 2.0 1 23 648 670 648 670 0.98
22 51 0.11 10 7.6 1.1 1 23 676 699 676 699 0.94
23 51 9.2e-07 9e-05 23.6 1.9 1 23 704 726 704 726 0.98
24 51 0.0024 0.24 12.8 0.7 1 20 737 756 737 758 0.94
25 51 6.2e-05 0.006 17.8 6.1 1 23 765 787 765 787 0.98
26 51 0.0028 0.27 12.6 0.2 2 23 794 816 793 816 0.96
27 51 6.6e-05 0.0064 17.7 0.9 2 23 822 843 821 843 0.97
28 51 0.00024 0.023 16.0 1.2 1 23 852 874 852 874 0.98
29 51 0.00024 0.024 16.0 0.0 1 23 879 901 879 901 0.98
30 51 1.7e-05 0.0017 19.6 1.4 1 23 907 929 907 929 0.98
31 51 3.4e-06 0.00033 21.8 5.2 1 23 935 957 935 957 0.98
32 51 8.3e-05 0.008 17.4 2.0 1 23 963 985 963 985 0.98
33 51 0.018 1.7 10.1 1.0 2 23 996 1017 995 1017 0.97
34 51 4.5e-05 0.0044 18.3 0.6 2 23 1023 1044 1022 1044 0.97
35 51 2e-05 0.0019 19.4 0.8 1 23 1050 1072 1050 1072 0.98
36 51 0.062 6 8.4 0.0 2 23 1079 1101 1078 1101 0.95
37 51 2.6e-05 0.0025 19.0 0.9 1 23 1106 1128 1106 1128 0.99
38 51 0.43 42 5.7 3.1 1 23 1143 1163 1143 1163 0.94
39 51 1.5e-06 0.00015 22.9 0.2 1 23 1169 1191 1169 1191 0.98
40 51 8e-07 7.7e-05 23.8 1.5 1 23 1197 1219 1197 1219 0.99
41 51 0.0049 0.48 11.9 3.8 1 23 1225 1247 1225 1247 0.98
42 51 0.039 3.8 9.0 5.2 1 23 1270 1292 1270 1292 0.95
43 51 0.00075 0.072 14.4 0.5 1 23 1297 1319 1297 1319 0.97
44 51 1.2e-05 0.0012 20.1 0.6 1 23 1325 1347 1325 1347 0.98
45 51 0.0095 0.92 11.0 9.2 1 23 1353 1376 1353 1376 0.98
46 51 0.018 1.8 10.1 0.3 1 23 1381 1403 1381 1403 0.95
47 51 7.2e-05 0.007 17.6 0.8 2 23 1413 1434 1412 1434 0.96
48 51 0.00074 0.072 14.4 0.5 1 23 1439 1461 1439 1461 0.98
49 51 0.021 2 9.9 0.1 1 23 1467 1489 1467 1489 0.96
50 51 1.6e-06 0.00015 22.9 3.3 1 23 1495 1517 1495 1517 0.98
51 51 1.5 1.4e+02 4.1 0.8 2 23 1524 1545 1523 1545 0.95

Sequence Information

Coding Sequence
ATGCTTACTCAACAAGACTCTCTTGACAGGAAGAAGACATCCCTAACATGCAGCGTATGTGGCAAATTGCTTAGAAGTCCTAGTTCGTTTAAACTGCACGTCCAGGCTCATGAtccattttttgtaaaaccaGCCAATAAACTCCAATGCAATGTCTGCATGAAGGTTCTATATACTATAGTTGATTTCTCAATGCACAAGACGAACAAGTGCATTGATGCATTGATTTATACTTGTGAAGTTTGTGGTAAAAAGTTCAAATACACATATAACTTAAACGTACACAAACGACGACACACCACCAATTATTCGgtgaaatgtaaatattgcgGTAAAGGATTCTTTACGAATGCTGAATACTGTAATCATATTCGTGTTGTCCACACCAAAGAACGAGTCAACTGTGTGCATTGTACTAAAACATTTGCGACGCACACCAATTATGAACGACATTTAAAGCTGCATGATCCAAATATACATATGATCGAATACACATGTCCGGAATGTCAGAAATTGTTTCACAATCGAGACGCGTGGCGTGTTCACGTCGCTAGACATTACAACAATTCAtttgtatgttatgtatgcGGCAAAATATTGACCTCGAGTGCAAGTTTGAGAGACCATTCCCGTGTTCATACGGGCGACAAACCGTTTCCGTGTTCTACTTGTGGTAAAACATTCCGAACGAAGAATATGCGGCGAATTCATCAACCGGTTCACATGAGTGCGAAACCGTTTATTTGCATCGAGTGTGGCAAATCGTTTACGCAACAAAGCAGTTTGAAGGTCCATCGACGGATACATACGGACGAACGCCCCTACCCGTGCCATATTTGTCTCAAACGGAAGAAGACATCTCCAGATAGTCATAAATGCGATGAATGTGGTAGTGTGTTTAAAAGTCTTATTTCGTATAAAGTCCACGTTCAGTCGCATGATCCACGTTTTGTTAAACGATTCCCGTGTAATGTGTGCAAGAAGATTCTATACGCTGAAGTTGATCTCGTCTGGCACAAAGCAAACAATTGCATTGCTGCGATCTATGCTTGTGAATTGTGCGATAAAAAATTCAATGACAAAAGTAGATTGAAAGTGCACAGTCGACGACACACAAATAACTACTCAGTTAAATGTGAACAGTGCAATAAAGGATTCTACAATAGTAGCCAATATCAAAACCACGTACGCACTGTGCATACGAAAGAACGAGTCAATTGCGTACATTGTCCCAAAACGTTCGCGACTCCAGCCATTTATGCACAGCATTTAAAATTGCATGATCCAAACAtgcatttgaataaattcaaATGCCCTAAATGcgagaaaatattcaataataggGACGCATTGCGTCTGCACATCGGTAGACATACGAATAATTCGTTTGTATGTTATGTGTGCGGGAAAGTATTGACCGCGGCTGCAAGTTTGAGAGACCACGTCCGTATTCACACCGGAGATAAACCCTATTCTTGTACCACATGTGGTACAGCGTTCCGGACGACGAGTTTATTGAGGGCTCATCGAACGGttcacaacaataaaaaaccgTTTGCTTGTAGGCAATGTGGTAAATCGTACTCTCAATACAGCAGTTTATCGGTGCATCGAAAGACTCACACGGGCGAACGCCCATACTCGTGTCATGTCTGTCACAGAcgtttttatatgaaatgtttCTTGAAAGCTCATGTTAAAACTCATGGTTTTATATCTTATCTTACTCAACAAGAATCTCTTGACAGGAAGAAGAAATCCAAATCGTCAGGACGTCTAAAATGCGATACATGCTCCAAAGAGTACACAGACCGAATCAAATTCGCCAAACATAAACGCACGCATAACCCGCGGAAGTTATCGTGTGTGCATTGCGATAAAAAGTTCCATTTCGAGCATCAGTTGAAAACGCACGAGGTGGCTCACTCCGACGATAAATCATACGCGTGCGGGCTATgcgaaaaaaaattcaaaacgaAGAAAAGTCTAGAGATGCACCAAAAACGTCATCTAAACGATTACAAATTCAAATGCGCTACTTGCGGTAAAGGCTTTTATGAAATTCACGTTTATCGTGAACATGTTAAGGTGAACCACAGCGGATTCCGGTACAAGTGCGACAAATGCGGCAAATCATTTAAGACTGCAAGCTCGTACAAATTGCACGTCCAGTCACACGATCCCAATTTCGTAAAGCCGGCTGAGAAACACCAGTGCGACGTATGCCACAAAGTATTTCGAATCGCGTTTGATCTAACCGCACACAAAGATAATAATTGCGTTGATCCAATCTACAATTGCGATTTGTGCGACAAAAAGTTTCGGCACAAATTCAATTTGATGAAACACAGTCGCAGGCACACGACGAACTACGCGATAAAATGTGAAGAATGCGATCGGGGTTTCTTCACGAAACCAGAGTATTACGATCACGTTCGCGTGACACATACAAAAGAACGGATCCAGTGTGTGCATTGTCCCAAAACATTTGCCACCCAAGCCAATTATGGGCGGCATTTGAAACTGCATGATCCAAACATGCATTTGATCGAATATACGTGTCCGAAATGCCagaaaatgtttcataatCGGGACGCGTGGCGTGTGCACGTAGCCAGGCACGATAATAATTCGTTCGTGTGCGATGCTTGCGGGAAAACATTAACAACGGCCGCAAGCTTAAGGGATCACGCTCGTGTGCATACCGGGGCAAAACCGTTTCCATGCTCATCGTGTAGCAAGTCGTTTCGAACTATTGCGTCTTTGAAGACTCATTTACGCACTCATACCAATGAGAAACCGTTTATTTGTTGTGAATGCGGCAAATGTTTTACTCAACAAAGCACGCTGACAGTGCATCGCAGGATTCACACGGGCGAACGCCCATACCCGTGTGATATCTGTCAAAAGCGATTCTTTACGAAAACACTAATGAAAAGTCATATTAAATCTCACGGAGTGTGCCCCCAGGCGATACCGACCCTTAAATGCGATATATGCTTCGGAGAATACGCGGATCGTACGAAATTAACCAAACACAAACGAAGCCATCGAGTACCTAATATACCATGTTCGATTTGCAAGAAAAAGTTTCGTAGTCCATATCAAGTTCGATTGCATCAATTGACGCACACCAACGAGCGTTTTTATCCGTGCGATATTTGCTCGAAAtcatataaaactaaatacgGTTTGAGCCAGCATCAGGCGCGTCATGTAGGcgatttcaaaattaaatgtgTCGTTTGTGGTAAAGGTTTCTATGAGGCGCCACCGTACCAAGAACACTTGAAAGTTGTGCACGGTGGCTTTCGTTACAAATGCGAGTATTGCGATAAAGTCTTTATGACGGATGGCTATTACAAAATACACTTACGAATCCATAAACCTGGTTAcgtgaaaatgaaaataacgcGCCGCAGAGCGTTTTGTTGTGAAGTTTGTGGAAAAACGATCACATCGAGTTTGCATGATCACATGCGAATACATTCGGGAGAACGTCCATTTGTGTGTGACGTATGCGGCAAGccgtttaataaaaaatcattgCTTAAAGTGCATGAGCGtatccataaaaatattagaaactACAAGTGCGACCAATGCCCGAAAACGTTTACGCAACGAAGTACTTTGGTCATACATTTGCGGTATCATAGCGGGGAAAAACCGTACACGTGTACGATTTGCCAGAGATGTTTCGTTTCGAAATCTTTGAAGGATAGCCACGTCAAATCTCATGGAATTCGACTAGTTGACATGAAAAAATTGCGTCGCAAACGCACAAAAGTGGACCCATCAGATCCGCACATATGTACAATTTGCCAAAAAGACTTCCCCGACCATCACCGTTTGTTAAATCACATGTACAATCACAAAGAGAAACGTTACGCGTGTGCGTTATGCGGCCAACGATTCTACTTCGAAGCAAAACTACGGAACCACCAAAAAATCCACGACGAGATCAAACAATTCGAATGCGATCAATGTGACAAAGCGTTCGCCAAGAAGGACAGTTTACAAGTCCACAAATTGCGGCACGCCGGCATTATACCATTCAAATGTCTACATTGTGATCGTGGCTTCTACAAAAAACACGACTTCAAAAACCACATAAAAGTCTGTCACGACGGCGTCAAATACATATGCTTTCCATGCAACAAATCTTTAACGGACGTCGCGTATTACGCTCAGCACATGCGAACGCACGACCCGAGTTATGAGGAGCAAGATTTGATTTGCCCGATTTGTGACAAAGTCTATAAAAACCGGGTCAGTTTTCGTTTGCACAAAAAGCGACACGAAGGGTTTAGTTTCGTTTGCGATATTTGCGATAAAAAAGTCGGTTCGAAAAGCAGATTGGCGGAGCATAAGCGCAAACATACCGGTGAAAAGCCTTATATTTGTCAGGCTTGTGGTAAGGGTTTTGCAAGCGGACGTACTTTGGCGGTACATTTTCGCGCGCACACGGACGAAAAACCGTTTTCATGCACTGAATGCAAGAAGACATTTACTCAACGTAGCTCGTTGAGTATGCATATGAAATCACATACGGAGGATGAGTTGATTAAATGtcatatttgtttgaaatggGTTTATACCAAACCAGAGTTTTTGGTGCATTTAAAGAGCCATGGAGTTGAGGAAGATGAACatagttaa
Protein Sequence
MLTQQDSLDRKKTSLTCSVCGKLLRSPSSFKLHVQAHDPFFVKPANKLQCNVCMKVLYTIVDFSMHKTNKCIDALIYTCEVCGKKFKYTYNLNVHKRRHTTNYSVKCKYCGKGFFTNAEYCNHIRVVHTKERVNCVHCTKTFATHTNYERHLKLHDPNIHMIEYTCPECQKLFHNRDAWRVHVARHYNNSFVCYVCGKILTSSASLRDHSRVHTGDKPFPCSTCGKTFRTKNMRRIHQPVHMSAKPFICIECGKSFTQQSSLKVHRRIHTDERPYPCHICLKRKKTSPDSHKCDECGSVFKSLISYKVHVQSHDPRFVKRFPCNVCKKILYAEVDLVWHKANNCIAAIYACELCDKKFNDKSRLKVHSRRHTNNYSVKCEQCNKGFYNSSQYQNHVRTVHTKERVNCVHCPKTFATPAIYAQHLKLHDPNMHLNKFKCPKCEKIFNNRDALRLHIGRHTNNSFVCYVCGKVLTAAASLRDHVRIHTGDKPYSCTTCGTAFRTTSLLRAHRTVHNNKKPFACRQCGKSYSQYSSLSVHRKTHTGERPYSCHVCHRRFYMKCFLKAHVKTHGFISYLTQQESLDRKKKSKSSGRLKCDTCSKEYTDRIKFAKHKRTHNPRKLSCVHCDKKFHFEHQLKTHEVAHSDDKSYACGLCEKKFKTKKSLEMHQKRHLNDYKFKCATCGKGFYEIHVYREHVKVNHSGFRYKCDKCGKSFKTASSYKLHVQSHDPNFVKPAEKHQCDVCHKVFRIAFDLTAHKDNNCVDPIYNCDLCDKKFRHKFNLMKHSRRHTTNYAIKCEECDRGFFTKPEYYDHVRVTHTKERIQCVHCPKTFATQANYGRHLKLHDPNMHLIEYTCPKCQKMFHNRDAWRVHVARHDNNSFVCDACGKTLTTAASLRDHARVHTGAKPFPCSSCSKSFRTIASLKTHLRTHTNEKPFICCECGKCFTQQSTLTVHRRIHTGERPYPCDICQKRFFTKTLMKSHIKSHGVCPQAIPTLKCDICFGEYADRTKLTKHKRSHRVPNIPCSICKKKFRSPYQVRLHQLTHTNERFYPCDICSKSYKTKYGLSQHQARHVGDFKIKCVVCGKGFYEAPPYQEHLKVVHGGFRYKCEYCDKVFMTDGYYKIHLRIHKPGYVKMKITRRRAFCCEVCGKTITSSLHDHMRIHSGERPFVCDVCGKPFNKKSLLKVHERIHKNIRNYKCDQCPKTFTQRSTLVIHLRYHSGEKPYTCTICQRCFVSKSLKDSHVKSHGIRLVDMKKLRRKRTKVDPSDPHICTICQKDFPDHHRLLNHMYNHKEKRYACALCGQRFYFEAKLRNHQKIHDEIKQFECDQCDKAFAKKDSLQVHKLRHAGIIPFKCLHCDRGFYKKHDFKNHIKVCHDGVKYICFPCNKSLTDVAYYAQHMRTHDPSYEEQDLICPICDKVYKNRVSFRLHKKRHEGFSFVCDICDKKVGSKSRLAEHKRKHTGEKPYICQACGKGFASGRTLAVHFRAHTDEKPFSCTECKKTFTQRSSLSMHMKSHTEDELIKCHICLKWVYTKPEFLVHLKSHGVEEDEHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-