Basic Information

Insect: Nebria salina
Gene Symbol: ab
Assembly: GCA_944039265.1
Location: CALUEJ010000037.1:1057507-1075385[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0024 7.2 7.6 0.1 15 43 289 314 282 315 0.76

2 10 8.6e-06 0.026 15.4 0.4 19 44 323 345 318 345 0.92

3 10 0.00083 2.5 9.0 1.7 14 43 399 425 389 426 0.84

4 10 0.0019 5.8 7.9 1.8 16 44 448 473 440 473 0.86

5 10 0.00012 0.35 11.8 5.8 19 44 481 503 479 503 0.95

6 10 2.3e-06 0.007 17.2 0.7 15 44 507 533 504 533 0.88

7 10 7.6 2.3e+04 -3.6 0.1 19 29 542 552 541 557 0.81

8 10 0.24 7.2e+02 1.2 5.6 12 44 580 609 575 609 0.84

9 10 0.13 4e+02 2.0 0.2 18 32 616 637 614 642 0.70

10 10 0.044 1.3e+02 3.5 0.2 4 29 674 699 673 705 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0024	7.2	7.6	0.1	15	43	289	314	282	315	0.76
2	10	8.6e-06	0.026	15.4	0.4	19	44	323	345	318	345	0.92
3	10	0.00083	2.5	9.0	1.7	14	43	399	425	389	426	0.84
4	10	0.0019	5.8	7.9	1.8	16	44	448	473	440	473	0.86
5	10	0.00012	0.35	11.8	5.8	19	44	481	503	479	503	0.95
6	10	2.3e-06	0.007	17.2	0.7	15	44	507	533	504	533	0.88
7	10	7.6	2.3e+04	-3.6	0.1	19	29	542	552	541	557	0.81
8	10	0.24	7.2e+02	1.2	5.6	12	44	580	609	575	609	0.84
9	10	0.13	4e+02	2.0	0.2	18	32	616	637	614	642	0.70
10	10	0.044	1.3e+02	3.5	0.2	4	29	674	699	673	705	0.77

Sequence Information

Coding Sequence: atggatAACAATATTAGGCAGTATGCGTTAAAATGGAATGATTTCCACGTAAAATTAACATCGTCGTTTCAATATTTACGAAATGAGTTCGATTTTATAGACGTTACTCTTGCAGGGGATGGTTACTCATTCTCGGCGCACAAAGTGATTTTGTCGGCGTGTAGTCCGTATTTTCGACAATTGTTGAAAGCGAATCCGTGCCAACATCCGATAATAATATTGCGCGATGTGAACAAACAAAACATGGAGAACTTATTAATGTTTATGTATAATGGTGAAGTGAATTTGGAACATGAACAACTCGCTGATTTCATTAAAGCGGCACAGTTGCTAAAAATCCGTGGTTTGGCTGATATTAAAGATACGTTCGCGCAACTTGAGAGCGAATCGTTCGGAAGTGAAGATTCTACGGCAACCGTAACGCGATCGCAAGAGAAGTTTactacaaacacacacaaatatgaTCAACCGATGGCTACACCAGTTCCCGCACCTGAACTTATTCTACCAAACTTGATTCCTGAACCAgATCCGCACTCTATGGAAGCACCATCATCGTCACATGAACCAGAGccaattgataataaaatagcaaTCATCAATTTAATCGAACCAAAACAAGAGCCTTTCGAATTAATCGATGAAGACTTATCGCTAGAAGATGTGTGTAGTGCAGAAGATATAAGTAACATGTCTTCAATGTCAAATCAATCATATAACGACCAAGGCAACAACGGTAACGAAACAGCAACAACATCCAACCAAAGCCCACCGGGATCATCTGATATAAAGCGGCCCCGAGTATCGATAGACTCAAATCGGCACCTGGTTCGAGAAAGAAAACGCACGATGCCCTATCAACTGTATCAAATCCAATGCGGCGATTGTGGATACACGTCAACGTCGCCGGGAAATTTGCGTCAACATATACGCACAAAACACGACCCAAACCGTCCAGTTTTCCTCTGCAACTATTGCAATAAAAGATATTCGTCCCCGAGTAACCTACGAGCGCACGTTAAAAACGTACACAGCGCTGTGTCGGTGGAAAACTGGCCTATGTGCACAATAAAAGTGAGAAATCGCAGGACTGCGTCGTACGAGTTGGCTGAGATCCGATGCGTCGATTGCGGATATATGGCAGAGACGCCGGGGAGTTTACGCAAACACGTCTACATCAGACACAACCCCAATCGACCGAAATACACATGTGCACTGTGTAGTAACACGTACTCGACGCAAAGTAATCTCAAATCGCACGTTGATAATGTGCACGTTGAAGTACCGATTGAACAATGGCCCAAATCAGAACTCGAGACGACGACATCGtcgaaaatatcaaattttcaatGTACCCAATGCACACGTATGTATTCAACTGCTAGCAACTTACGTGGTCATATGGATAGAAAACATAACCCAAACTTTACCGGATACCTTTGCCAGCATTGCAACAAAAACTACTCAGCGTTGAGTAACTTGAACAGCCACATTGAGCACATGCATAACCCAAGTCGCGAACGGATCCCCTGCAAATACTGCAAAAACATGTACTCAACAACATCGAATTTACGTCGACATGTCTTAGATATGCACAGCAAAACGCCTAGATTTTGGTTTCCGTGCGACAAATGCGAACAAAAATTTCGTTCGAAAGTTAAACTTGACAACCATGACCGAAGGAGCCATAGTATTATTGCTTTTAATGAAGAATCAGAGACGCACGTAAAAGCAGAAACAACCGGCCAGGAATATCGATGTCATCTATGCCATCTAAACTATTTGCATAATTCAAGTTTACGCACTCATATCGAACAAAAACACAGTCCTCTGCCCCCAACACTAAAGTGCGGCCATTGCGATAAACTATTCAAAACCCGACAGTATTTAGTGATGCATGAACACAGAACACATGGTATTTCTAGACGATCAACCAtgATTGAAGGCGAAATCCAGCAAATAACTTTGGAGCATAATGCAAATTATGTAAACATGGTTTTCACATGCGACTACTTTACTTGGGCATTTGCAGCGATACACGTAGGAATACTGAACAAATTGGCGTGTTACCTTTGCAAAAAGAATTACGAAACGCGGCTATATTTGACCTCGCGTCAAATTCTTATTATGTATAAAGATTTGAAGAAAATGAGGAAATTAGATTGTACAAAGAGCAACCCTGCCTATAAAATTCAAGTCGTCCACGTCTGGGAACGCAAAAGGTCCACAGCCATGTCATATTTGCGGCCGAGTGTATTCCACCATGACAAACTTACGTTCGCATATCGCAAACGTACACAATCCCAATCCCAACTGagatCAAAGTCCAAGAACATCGAAAACGGAAACGCACCAATGCCCGGTATGCCATCACAACTACTCTACCCTGAGCAACCTAAGGGCTCATGTGCACAACATACACAACTCCACCATGCAAAATACTTACTATGA
Protein Sequence: MDNNIRQYALKWNDFHVKLTSSFQYLRNEFDFIDVTLAGDGYSFSAHKVILSACSPYFRQLLKANPCQHPIIILRDVNKQNMENLLMFMYNGEVNLEHEQLADFIKAAQLLKIRGLADIKDTFAQLESESFGSEDSTATVTRSQEKFTTNTHKYDQPMATPVPAPELILPNLIPEPDPHSMEAPSSSHEPEPIDNKIAIINLIEPKQEPFELIDEDLSLEDVCSAEDISNMSSMSNQSYNDQGNNGNETATTSNQSPPGSSDIKRPRVSIDSNRHLVRERKRTMPYQLYQIQCGDCGYTSTSPGNLRQHIRTKHDPNRPVFLCNYCNKRYSSPSNLRAHVKNVHSAVSVENWPMCTIKVRNRRTASYELAEIRCVDCGYMAETPGSLRKHVYIRHNPNRPKYTCALCSNTYSTQSNLKSHVDNVHVEVPIEQWPKSELETTTSSKISNFQCTQCTRMYSTASNLRGHMDRKHNPNFTGYLCQHCNKNYSALSNLNSHIEHMHNPSRERIPCKYCKNMYSTTSNLRRHVLDMHSKTPRFWFPCDKCEQKFRSKVKLDNHDRRSHSIIAFNEESETHVKAETTGQEYRCHLCHLNYLHNSSLRTHIEQKHSPLPPTLKCGHCDKLFKTRQYLVMHEHRTHGISRRSTMIEGEIQQITLEHNANYVNMVFTCDYFTWAFAAIHVGILNKLACYLCKKNYETRLYLTSRQILIMYKDLKKMRKLDCTKSNPAYKIQVVHVWERKRSTAMSYLRPSVFHHDKLTFAYRKRTQSQSQLRSKSKNIENGNAPMPGMPSQLLYPEQPKGSCAQHTQLHHAKYLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01041031;
90% Identity: iTF_01041031;
80% Identity: iTF_01041031;