Nsal011072.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000089.1:401245-401751[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.3e-09 6.2e-06 26.7 0.0 2 39 14 51 13 54 0.95 2 3 3.1 5.7e+03 -2.0 0.0 24 34 82 92 81 104 0.65 3 3 4.5 8.3e+03 -2.5 0.0 21 30 97 106 95 107 0.84
Sequence Information
- Coding Sequence
- ATGTCAAAACAGTCAaaacgtatttataataaatggaaAAAAGAAGATATGGAAGAGGCTTTAACTAAATTATCCGAAGGAGTAATTGGCTTCAATGAAGCTCATAGGCAATATAAAATTCCTAAACCAACATTACGGCGACATTTTAAAGGTTTAAATAAGAATGTTAAATTTGGAAGGCCTAAGGATATGACCGCAACTATGGAGAAGGAGTTGGTTGAACACGTTCTCAATTTAGAATCAAGCATTTTTGGGATTACTGCTACCGATCTAAGAAaacttgcctatcaattggcagaaaaatataaattaccaCACCGCTTCAATAGAGAAAAAGAAATTGCAGGCAAGAAGTGGTACTATAAATTCATGAAAGATAATCCTTCTTTATCTTTGCGTACTCCAGAAGAATGTGCTTACGGATGTTTtgataaatgcgaatccatatTAGATGAATACAAATTCACTGCTAACGTTGACGAAACAGAATTGTCTACTGTCCCATGA
- Protein Sequence
- MSKQSKRIYNKWKKEDMEEALTKLSEGVIGFNEAHRQYKIPKPTLRRHFKGLNKNVKFGRPKDMTATMEKELVEHVLNLESSIFGITATDLRKLAYQLAEKYKLPHRFNREKEIAGKKWYYKFMKDNPSLSLRTPEECAYGCFDKCESILDEYKFTANVDETELSTVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039155;
- 90% Identity
- iTF_01039155;
- 80% Identity
- -