Nsal029733.2
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010001308.1:2290858-2292789[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-11 1e-07 32.4 0.0 4 39 18 53 15 57 0.92
Sequence Information
- Coding Sequence
- ATGGTGCGCAATCGGGAACGAAAAACGAATATGGGGAAAACGGATTCTGCTCAAATGATGAATGCTGTGAAATGCATTATGAATGGAGGCCTCTCATTGAAATCTGCGAGCACGCGATTTGATATACCAAGGACTACTCTAAGACGATATCTCGAAAAAAGTAGAGATCTAAATATTGACTGGACCAATCCAAACTTGAATGAATTACCAAGATTCACTCCTATTTATGAAGTaaggaaaatattttcattagatGAAGAGAAAGCATTGAGTTCATATTTAATACGCGCTGCTGAGCTTCATCATGGCTTACCGCCGCAAGAAGCACGAAAATTTGCTTATGAATTTGCTATTGCTAAGAATAAACAATTTCCTGATTCATGGCTACGAGACAAAAGCGCTGGAAAAGATTGGTTCACCAACTTCCTAAAACGGAACATAAATATTTCCCTTAGATCACCAGAAGCAACCTCATTAGCTAGAGCCATGGGATTTAATGAAGTTgtagtaaataaattcttcgaaaatttaagaattattttagaaaaatacaaaattggaCCAGAATCGATATACAACACAGATGAAACTGGATTAACAACAGTTCAGATACCTCCAAAAGTTTTAgcgagaacaggatctaaacAAGTTGGGCAAATTACCAGTGCTGAACGCGGCACTTTAGTGACAGTTTGTTGTGCAATTAATGCTGTGGGTAATTCAGTACCACCTTTTATGATATTTCCTCGGGTTCATTATAAAGACTTTATGATAAAAGGTGCTCCACCTGGAACAGTTGGTGCTGCAACACCTAATGGTTGGATTAATTCCGATGTATTTTTCGCATGGATGAagcattttattaaacatgcaAAACCTAATAAAGAAAATCCCGTTCTCTTAATAATGGACAATCACGAAGCTCACGTTAGTTTTGATGTTAATCAGTTGGCTAAAGATTCTGATGTAATATTATTGACTTTACCTCCACATACCAGCCATAAACTACAACCACTTGATAAAAGTGTTTATGGCccgcttaaaaaatattataatgatGCATGTAGAGCTTGcgAACACGATTTTATTAGCGCAAGTGTTACTGATATACCATTACCAGATATTAATAACACACCATCAACTAGTAGAGGATTAAATAAGTCAAATATTACTCCAGAGATGGTCAGACCATATCCCAAAGCAAAAGGAAATGAAAAAATCAAATCTTCCAGAAAACGTAAAACTACGGAAATTTTAACAAACACGCCGGTGAAAGATCGAATAGAACaagtatatttagaaaaacaaagaaaaaaagaCTGCAGCAATAGAAaagatatgaaaaaaaaattatttcaatcagAAGAAACCAGGACTATCATAAAGAAAGGAAAAAAGCAGACAAGAGTTGATGAAAGTGAATCGTCTAATTCAGAAGAAGAAATAGAATTTACAGATTcatatgaaatagattttgtAAATGAAGATGAAACTATAACTAATGACATCGAAGATATGAAGGAAGGCAATTTTGTGTTAGTAAAATTTCCTACAAAAAAGTCCATAATATATTATGTAGGGCAAATAGAAAAATTTTGCAAGGATGATCTCACTATAAACTTTCTTCGAAAAGTGAATAATTCATTCGTATTCCCTGAAGATAAAGATGTAACTAATAGTGATATAGTATTAGTATTACCACCACCTACTTCTATGGGAGGAACGGCTAGAACTTCTAAATCTCTTAAATTTAACATTGATTTAACAtcttatttaatatcataa
- Protein Sequence
- MVRNRERKTNMGKTDSAQMMNAVKCIMNGGLSLKSASTRFDIPRTTLRRYLEKSRDLNIDWTNPNLNELPRFTPIYEVRKIFSLDEEKALSSYLIRAAELHHGLPPQEARKFAYEFAIAKNKQFPDSWLRDKSAGKDWFTNFLKRNINISLRSPEATSLARAMGFNEVVVNKFFENLRIILEKYKIGPESIYNTDETGLTTVQIPPKVLARTGSKQVGQITSAERGTLVTVCCAINAVGNSVPPFMIFPRVHYKDFMIKGAPPGTVGAATPNGWINSDVFFAWMKHFIKHAKPNKENPVLLIMDNHEAHVSFDVNQLAKDSDVILLTLPPHTSHKLQPLDKSVYGPLKKYYNDACRACEHDFISASVTDIPLPDINNTPSTSRGLNKSNITPEMVRPYPKAKGNEKIKSSRKRKTTEILTNTPVKDRIEQVYLEKQRKKDCSNRKDMKKKLFQSEETRTIIKKGKKQTRVDESESSNSEEEIEFTDSYEIDFVNEDETITNDIEDMKEGNFVLVKFPTKKSIIYYVGQIEKFCKDDLTINFLRKVNNSFVFPEDKDVTNSDIVLVLPPPTSMGGTARTSKSLKFNIDLTSYLIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039153; iTF_01040788; iTF_01039154; iTF_01040789; iTF_01040790; iTF_01040791;
- 90% Identity
- iTF_01039153;
- 80% Identity
- -