Nsal013011.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- bab2
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000122.1:219785-225042[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9 1.9e+04 -3.6 0.2 6 20 309 324 309 324 0.69 2 2 9.4e-17 1.7e-13 50.9 0.0 2 45 379 423 378 423 0.95
Sequence Information
- Coding Sequence
- ATGACGATGCAACAGTTTTGTTTACGTTGGAACAACCATCAGCCGAATTTCATTTCGGTGTTTTCCAGTCTTCTCAATAGTGAATCTCTCGTTGATGTTACGTTAGCGGCTGAAGGGCGACATTTACAAGCACACAAAGTTGTTTTATCCGCTTGTAGTTCATATTTTCAGtcattatttacaataaatccTTGTCAACATCCGATAGTGATTCTAAAAGATGTGAAATTCATGGACTTGAAGGTGATGGTGGATTTTATGTATTATGGCGAAGTGAATGTGTCTCAAGAACAATTGccacatatattaaaaacagcAGAGATGCTAAAAATCAAAGGGCTAGCAGAAATGCCTGATTCGACATCGTTGACAAAATCACAAAGCGGCTCATCTGAGCGAGCCGAGTTGTTAACACCTGGCGATTCAAATTGGAGTTCAGACGCACAACGAAGATCACTGTCGCCATCGCCGTGCCCTTTATCACCTGGTGCTAGAAGAAAAAGATTAAGGAAATCGTCGACCGGTTCAGGATCAGGCTCAACTGAACGCACATCAGAAGACCATCACAACGAAGTACATTTAACATCACCCGGTGGAAGTGTGGTCAGTACGAATATAAAACAAGATCCTGGATTTCCATCCGAGTGTTCTACTATAAAACAGCATAACAGTGATTCGGAGCCGCATAGAGATAGTTCACATGAAAGTGTTGAAGAGGCACCGCATCAAATAACTCTACAAATACCACAGCAAGCCGATGTTAGTCTACAAAATATGGAGCCTGCACAAATTGATATGCCAGGCCCTTCCACATCATGTCCTCAACCACCAGTACCAgGGTTGCAATGGGCTTTTCTGGAACACACCTACCCCCGATTCGCACTATCCTCATGTCATACAAGCATGGCACTCACCTCATCTGCTGCTGAAGCCGCTCAGTACAGCATGGCCGGTGGTGAAACATCAATATCATCATGTGCGCTGAACAGTAACGATACCGTACCAACAGCATCCGCAACTAGTCCCTGTCATAGCATATGTCAATCTCCTTGTACATCACCGTCACCGAATCAGAATTACAACAATCCAAATATAATATCAGTGAAACGAAAACGCAGTGTGAATCCGCAAGCCGATGAGAACTTCTTACGCGCTTTAGAGGCAGTCAGATTTGGCGGGATAGGATTTTGCAAAGCGGCGCGAATGTACGGCGTTAATAATCGAACCCTGTGGCTAGAATATAAAAAACGCGGCTATCCAATCAGTCGGCTTAGCATTAAAAGTAGAGTTAGACAAGATACACCAGCGccgcaacaacaacaatcacaagacccacaacaacaacaacaacaacaaatatcTGCATCTGCGCCTTCCGAAACAACAAATCTAAATCATTCTCAGCCAGTCATTTGTCCACCGCCTCATTCTGTTGCGATGATTGGTGCATCGTTTCCGGCTGATTTTCAGCCCAACATTCAAAGAAACCAGTATCAAGATGCTATTATAGGTCCCTCCCCACCGCATATAACATCCGTACAAGGATTGAATTTCAATCCAATGTGA
- Protein Sequence
- MTMQQFCLRWNNHQPNFISVFSSLLNSESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTINPCQHPIVILKDVKFMDLKVMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPDSTSLTKSQSGSSERAELLTPGDSNWSSDAQRRSLSPSPCPLSPGARRKRLRKSSTGSGSGSTERTSEDHHNEVHLTSPGGSVVSTNIKQDPGFPSECSTIKQHNSDSEPHRDSSHESVEEAPHQITLQIPQQADVSLQNMEPAQIDMPGPSTSCPQPPVPGLQWAFLEHTYPRFALSSCHTSMALTSSAAEAAQYSMAGGETSISSCALNSNDTVPTASATSPCHSICQSPCTSPSPNQNYNNPNIISVKRKRSVNPQADENFLRALEAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPISRLSIKSRVRQDTPAPQQQQSQDPQQQQQQQISASAPSETTNLNHSQPVICPPPHSVAMIGASFPADFQPNIQRNQYQDAIIGPSPPHITSVQGLNFNPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01040236;
- 90% Identity
- iTF_01040236;
- 80% Identity
- iTF_01041016;