Ning015003.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000207.1:475827-479214[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.7 1.4e+02 3.2 4.4 1 23 824 843 824 843 0.87 2 8 0.0003 0.024 15.1 0.1 3 23 851 871 850 871 0.96 3 8 0.011 0.89 10.1 2.2 1 23 879 901 879 901 0.96 4 8 0.0034 0.28 11.7 0.3 3 23 945 965 943 965 0.96 5 8 0.0027 0.22 12.1 0.2 2 23 971 992 970 992 0.97 6 8 0.00052 0.042 14.3 4.3 1 23 1007 1029 1007 1029 0.98 7 8 0.12 10 6.8 4.6 2 21 1036 1055 1036 1056 0.92 8 8 0.64 51 4.6 3.9 2 23 1062 1083 1061 1083 0.96
Sequence Information
- Coding Sequence
- ATGTTGAATGATATGAAATCAGATGAGATTGATATGAATAAAGTGTGCAGAACTTGTTTAGCTACTGGGGAATTGATATCTATATTCAATCCATGCGCAACAGGGCCTTGTATATTACAGAAATTAACTTCAGTTACATCTAAAAAGTACTACGATTGTTTCGGTTTGCCTACTCAAGTGTGCAACGTATGTGTTTACGAAATAAACCGCGCGTACAAATTCGCATCGAAATGCCATGAAACGGATCGGAAATTGCGAGATTATATACGACAAACGAATGCGACATCTGAAACTGATTCGGCAACCATTTCTAAAGTTGTCGGCCACTTGGAAAAAGTCAGTTTCGATTTAACAGATAACCGAAACAAATGGATTGATTCTATAAATCAACGGTTTAAAAAACAAAAGTTAAACTCGCAAGAATTTACAAATGCGGTTCAACGCTCTATTCACGTTACAATCAATTACGATTCGGACGAATCTGATTTTGCTGAAATCCATAATTTCCCTCGTGTTTACGAAAATAATCAAATCGCCCACTTTAATCATGACAATCAACCAGAATACGATTATTCACATTGTTCCAAATCAGAAGTTAATCTTAAACGAAAAATTGTTGAACAAGTACTTGAAAGCGGTATAAAAATCGAATTAACCAGTGAAGTCGACTTAGGAATCTCCGAATCATCTAATCATTCAAATGAAAACGTTTTAAATCCAGATACAGAATTACAAATAAAAACAGAAATTTGCGCTAATAACTCGGATGACTCACTAGCAAATAAAGAAATTAAATACAATTTAGAACCAGAATGCTCGCTAACTTCTAATTTATTAAATACGTCTGAAGTTAGCAACGAAATAAACCAATCAGACAATCAAAACTCAGCTTCATTAAATTTTAAATCCACAATTCCAACAAGTGCCCTAGAATTACCAATAAACAATCAAATTGAAACAAATAGAAACCAACATTTAACACTGCCAAAAAATATAACAAATGCAGAACAACAAATTACCCCGAATCAAGAATTCGATTTAAAACAGTTAACTATCGAAAATCAAATAGTACCAAACCTACAAAGCGATTTAGGACATTTAAATGAACAAGTGTCCTCAAATCTAGAATTAAGTTTCGAAAAACAAACATCCCCACATCAGAATTGTAATTTAGAACCGTTGAATAACGAAAATCAAATCGCTCTAAATTTAGAATGCGATTTAGAACCACTAAACACAACATCGAACTTAGAATTCTCTGAATATGGATTAGATTTTGAGAAACGAATTAATTTAGATTCAGATCAAGATCAAACGCAATCAGGGTTTGCGAAGTATATGGAAGACTTTTTGGCTGAAATTTCACCGTTACCAAATGATCAATTGAACAAAGAAATTGATTCGTTTGAAGCTGATATTCAAACGTTCATAGATCAAGTGTCTCCTAAATTGCAAGTGCATGCAATTGAAAGCGCCGAAACGGCCGAATCTGTTCCGGAAACCAGGCATTATTTTGATTTAGACTTAGTAAAACCGGAAATAGATGAACTAGATCCGTTAGTTATTGATGAGTCAGTTTGTAACGACATCAGAAATGAAACTGTTCCAACTGAGTTATCAATTACTGGTGATTTGAATGATAAAACTAAAAGTAATAATGAAATAATTTTTGCTGAAATAAATGTTGAGAATGTTCTAAGTCAAACATTCGATAATAAAATATATTATAAAATAAACTCAAATATTTGCACTTTAAAGAACCAAATACTGCCTAACTCGAATAGCTTAAACTATCACAATATTATTAATCACAGTGATACAGCGTATTTACATAACACTATTGATATATCTAATAACGTGATTGATTTAACGAACAATGATATTATAAACAAAAACAGCCCGAATAATAATAACAATAATAATATACGAAATCTAAGAAAAATACTACCAAATAATACATTATCTAATCAAGAATTGTGCCATAACAATAAAGCATCATGTAGCCTACCAAACTATCAAACCAAACTATTAAATAATATTAGAATTAATTCAAAAACTACTGAAACGAATACCAAAAACAGTCAAATTGAGCTAACAAATAAACAAAATACAGTGAATAAATCACAAGTTGATATAAAAACTAGTCAATCAAACACAAAAATTAACTTAAAAACAACTAATGAAAACACTCCAATTACTGATGAACAATTCATTAAACTAGAACCTGCACAAAATTTAGATGGGAATTCGCAAATTGAACTATTAAATAGTTGTAGTACAATAAATAAAATACTAACTAAAAATCCGAAGGACAATAATGTTGAAATAGTACAAAATAATAATGAAAACTGTTCTAATTTGAGTAATAATGTAATAAATGATGCAACAACTAGTAAAAGTAGCAGTGAAAACTGTGAAAAAACATCACAAAAGACGGAAAAGAAACCGTGGAAAGACGGTCGCAAATACCACCGTTGCTCGATTTGTTCCCGAATAGTGCGACATTTAACGAAACACATGCGCGGTCATACAGAGAACACAAGTGCTATGTGTGAAATTTGCGGGAAAATCCTTAAAAATCCTAGAGATTTTATAAAACATCAACTTGCTCATAAAACTAAAGGTGCCAAGGAATTCAAATGCAATGCGTGTACGAAATCATTCTTTGAATTCGAACTACTTAAGAAACATCGTGAAGACCATAAAACGACTAGGATTTGTACCAAATGTACGAAACGAATCTTAAAAAGTAATCTAACACACAAATGCGATCGATTACCCGAAAAACCTAAAGAGGTAGCATCCGTTCAGCAAGCGAAAGATGTGATAAATTGCGACAAATGTGACGCTAAGTTCACATCGGTCGACACATACAATACACACTACTTAATTCACACAACTAAGCAAGTATCTTGTACGAAATGCAATCTAATTTTTGATTCCGATGAATTGTTAATCGAACATTTAAAAACACACAGTGAATCAATAATAGATCAGGACATTTCGCTGGATAAACAATTTACTTGCGAGTTTTGTGAGAGGAAATTCACGTTTCATTCGCAGTTAATTTATCACTTAAAAATCCACAAAACAAAGAAGGTAAACGAGTGCAAATATTGCGGCGAAATTTTCGCTAAATATTACTGTTTTCGTAATCATAAATGTAAAAAGTTCCCCGATACCACTTGTCCTACTTGTAACAAGTATTTTGATTGCGAAATTAAATTGAAAAAACATTTCAAAATTCATATTAAGAAATCATAA
- Protein Sequence
- MLNDMKSDEIDMNKVCRTCLATGELISIFNPCATGPCILQKLTSVTSKKYYDCFGLPTQVCNVCVYEINRAYKFASKCHETDRKLRDYIRQTNATSETDSATISKVVGHLEKVSFDLTDNRNKWIDSINQRFKKQKLNSQEFTNAVQRSIHVTINYDSDESDFAEIHNFPRVYENNQIAHFNHDNQPEYDYSHCSKSEVNLKRKIVEQVLESGIKIELTSEVDLGISESSNHSNENVLNPDTELQIKTEICANNSDDSLANKEIKYNLEPECSLTSNLLNTSEVSNEINQSDNQNSASLNFKSTIPTSALELPINNQIETNRNQHLTLPKNITNAEQQITPNQEFDLKQLTIENQIVPNLQSDLGHLNEQVSSNLELSFEKQTSPHQNCNLEPLNNENQIALNLECDLEPLNTTSNLEFSEYGLDFEKRINLDSDQDQTQSGFAKYMEDFLAEISPLPNDQLNKEIDSFEADIQTFIDQVSPKLQVHAIESAETAESVPETRHYFDLDLVKPEIDELDPLVIDESVCNDIRNETVPTELSITGDLNDKTKSNNEIIFAEINVENVLSQTFDNKIYYKINSNICTLKNQILPNSNSLNYHNIINHSDTAYLHNTIDISNNVIDLTNNDIINKNSPNNNNNNNIRNLRKILPNNTLSNQELCHNNKASCSLPNYQTKLLNNIRINSKTTETNTKNSQIELTNKQNTVNKSQVDIKTSQSNTKINLKTTNENTPITDEQFIKLEPAQNLDGNSQIELLNSCSTINKILTKNPKDNNVEIVQNNNENCSNLSNNVINDATTSKSSSENCEKTSQKTEKKPWKDGRKYHRCSICSRIVRHLTKHMRGHTENTSAMCEICGKILKNPRDFIKHQLAHKTKGAKEFKCNACTKSFFEFELLKKHREDHKTTRICTKCTKRILKSNLTHKCDRLPEKPKEVASVQQAKDVINCDKCDAKFTSVDTYNTHYLIHTTKQVSCTKCNLIFDSDELLIEHLKTHSESIIDQDISLDKQFTCEFCERKFTFHSQLIYHLKIHKTKKVNECKYCGEIFAKYYCFRNHKCKKFPDTTCPTCNKYFDCEIKLKKHFKIHIKKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -