Ning015005.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000207.1:482812-493579[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6 1.3e+02 3.4 3.2 1 23 162 186 162 186 0.92 2 11 1.5 1.2e+02 3.4 0.1 4 17 283 296 283 297 0.86 3 11 0.38 31 5.3 0.6 1 21 631 651 631 652 0.94 4 11 0.22 18 6.1 4.3 1 19 1358 1376 1358 1378 0.95 5 11 0.041 3.3 8.3 1.8 1 19 1402 1420 1402 1423 0.92 6 11 0.019 1.5 9.4 1.3 1 20 1442 1461 1442 1466 0.92 7 11 0.02 1.6 9.3 1.1 3 21 1517 1535 1515 1536 0.91 8 11 5.2 4.2e+02 1.7 0.5 2 23 1544 1564 1543 1564 0.86 9 11 0.0016 0.13 12.8 6.8 1 23 1570 1592 1570 1592 0.97 10 11 5.4e-07 4.4e-05 23.7 1.5 1 23 1598 1620 1598 1620 0.97 11 11 0.0018 0.14 12.6 0.5 1 22 1626 1647 1626 1647 0.93
Sequence Information
- Coding Sequence
- ATGGCAAATAATGACGCTAACGAAACTGGAGGAGTTTGTAGAACGTGTATGTCCACAGACAATTTAGAATCATTGTACCAAGATTGTGATAGTGATTTGTGTTTGGTTGAGATGCTTATGTCTTGTACTTTAGTACAGTTTAGTAAAAACGACGGTTTATCAACACAAATTTGCATTGATTGCATACGCGAAATAAATCGCTCTTACGAATTCGCATTGAAATGCCAAGAAACAGATAAAAAATTACGTATTCAACTAGAAAATAATCAAAACGAAGTTGCAATCTCGACTTTCGAAATCGAAAAACCAACAGAAGTGTACGTCATAACTGAACCAGAAACTATTGAAGAAACTCAAGTTAAATACGAAATAGAACTAGCGAATGACGACGTGAGTAATGAGCTCAATGACGCCAACAGCGAAACTGAAAATTATCCTTCAGTAAAATCGAAAATCAAACGCGGTAAAACTAAAACACCACCGTACGAGTGTAAAAAGTGTTGTGAACAATTCCCAGTGTATTATTTATTAAAAGAACACTATAAAAAAGCGCAACACCCGAAAACGGGCTACGAAAAACGGCCGTGTCCAACATGTGCGAATATTGTTTTAAGTTATTTAAACTTAAAATATGGAGCACATGGATACGCTACAGAAGCACCAGTTAATAAACAATTATTACCTGTAGTGCAAGAATATGATTGTTGTGTACCTGGTTGTAATTCAAACCAGGTAAATAACACCCAATTGTATTATCATCCCTTGCCAAGTGACACCCGGCTTCGCGAATTATGGTTGGAAACTTGTAATATCGTCGAACGTGATCCAGTTATTACAGAAACATTTCACGTGTGCGGAAAACATTTTGATTCATCTCAATATTTACAAAATTATCAACTGTTGCAAGGATCTATACCGAAAATCATTCCAAATCGGACCAAACCAAGCGATTCTAAATCAAATACGAAAACTATTTCAAATAATGTTGTTATAAATAATGCTGCACCTGCATTAAACATGCTAACTTTAAATAAAGAAGTACGTGAACGTATTAATGATAGTAAAGTTCAAAAATTCAATGTTTCGTTGCGCAATGATAAATTATCGCATTTACTTTTGGTGTTAGATCAATATAAAACTACTTTAGATCAAAGCGAAAGCAAACCTATCGTATACAATTCAGTTGATCCGATTTTAAACAAAAAACTTTTCGACATGATTGACGTGTCGACTCTTCCGATACCCAACGTAACACAAACGCCGGAAGAAACATATCCAGTCGTTATAAACAAAATCACGTCCACCGGTGAAGAAATTACGATGACAATTAAAAGCTCGAAAAGAAAGCATCAATTACAAATACCCAAACCGATAACTTATGATTTTACGCAAGTTTGTCGAATTTGTTTAGAAAACGGCGATTTAAAACATATTTACGAAGAAATCATCGATGAGATTTGCGTGAATGAATTACTAGAACGATACACATCATTTATGATGTTAGAAAATTCCAATTTACCGTCACAAATTTGTACAAAATGTTTGGTAAATTTAAAACAAACGCATGAATTTTTCAAAAAAGTCGACCGTTCCTGTACGATTTACCAGAACCGATTACGTTCACAACTGTTGGATCAATCCGATTTGTTGACTTATAAACAAAAATATTTTACACCGCTTCAAATTCCGGTAAACACTGAAGATCTTGAAGCGCCCGAAATGCAAGAAGAAGAAATACACAAAATTCCGGAAGAAACGTCTGAGAGTATAGTTGAAAATAATGGTAATAAGGTTGTGATTGATTTGGAGCCGATACGAACTATAGAAGACATTATGGATACTGGATTTAATGATATGGTTAACGAATCGATTCCGATGAACGCGGATGAGTTTATATGTTTGAAATGCGAAGAATCGTATGAGAACTTCCTGCTGCTTTCGAAACATATTTGCGTTTTTACACCTGAACCGGCGGCCTTTTTAACAGATTATACATTACCCGGGTGCAAAAATAACAGCGAAATTAATTGGGATGTAGAGTTTTTCCGAATTCCATCGGGTAAATCGAGTAAAGGTGTACCTGATCCGCAGATATTAAAACGGCGACAATGTTGGATTGAAGCATTACAAATAGACGATTCGGATCAACATACACTTAAAAACGGACGCATTTGCTCAGATCATTTCCTAATAGGACAACCTATAAGATTCGAACAAGTTGACCATCCAGATTGGGGTATACCAACGATATCTCACCCAGAACCTGAACCAGATATAATCCCTTCTAATCTAGAGCCAGAATTAACAAATAAAGAATGTGAAGAATTCAACCCAGTTTCGATTGCATCATATAGATTAAAACATGAGCCAAATAAAAGAAACGCAGTTTGCAGTTGTCATTTTAAAGACGGCTCAAAACAGAATTTACCTGAATATTTTCTGCGTAATATTAACATACATTTTGATTGTTTTCCTGTGGTGGAAACTCCTAAACGTTTAAAATTTCGTATTTTTAAACCGACTGAAACATCAAATATTGCACAAATTCGGGATTTATTATCTCGAGTCGATAAAAAACCCAAACCTACAAAAAAGCGAGCCTCCCCTAGAATAGTCTTCAAAGAATTGGAACCAGTTATAGATTTAGACTTATCTGATCTTGTTGTCGAGTCAAAAGTGGAAGTCTTTGTTCCAAAGAGTTTAACGACATGCGGCATAAATACGTGTGCGCATTCAAGTGAGAATAGTAAGTGTGAATGGATCAAAATGCCACAAGTTGATAAGCTTCGAAATCAGTGGATAGAACAAATTGGAAAATTCGGTGATAAGTTGCGGAGCAATTCATTGATTTGTACTTGTCATTTTGAAGACGAGAATGATCGAATGCGTGGTCCAACAATATTTTACGCAAATGTAGATGTTTCATATAATAACGATGAACTTAATAAAATAAAACAAAGTGATTCTGATATTGATGAAGAACCACACACTGAAAAAGTACAAGTACAAGTTGCCGATTTCGTTGATTCGCCATCGCATAAACAAGATGATACTCTAGAAACGACGCTTATCCAAATGTTAAATAGTACACCGGAGCAAATAACCGCATCACTAAATCTAGATACGAACCTGAAGCTTTACAACTTCAAAAAGACCTGTCGAATTTGTTTAAATAATAGTCCATCCCGAAATATTTACGAAGACCACATCGAAGACATTACTATTGTCGACATGCTACAACAAGTTACTTGTTCACAGATTTCAGAGACGGATAAACTTCCGAAGCTTGTCTGTACCAACTGTGTACAACAAATATTTTATGCGTATAAATTTTTAAAAAAATTCGTTAGTTCAAATAAAAAACTTGTCGAATATGTAAACTTTTGCGAAGAACATGTAAACACAATCACCGATTTACAGCATTCGATACATGTTGATCATTGTTACGATTCATTTCGAAACCCTCAATTAGCCGAACCGGAGTATGTGAACCCGGATTTATGCGACGGCGAAATACTAGAAACCGATCCTCTTGCTATGGAATCTTCGTTGTCACCGGATTTCGAACATGAACCAAATGCTAGATATTTACCTGTTATACCAGCGGGTTTCGTTCAATGTTACCCTGAACGTTCGAATAAATCAAATATGTCTGAAATACCGATTATTTCCGCCGATTTTCCTAGTTATTTGGTAAACATGGCTGATTGTGACGTAGATGAATCAGATAAAAATATCACTGCAGACATTTTAGTTAGAAACGGCATAGAAATTGCTAATACATCGAACAATATTGAATTCGATGTTCCTCTTACAATTTCCGGTAAAAGTTTGCTTCAAAACGAGGTGAATGAAGTTTCGCTGTTACGCAGCGAGGAATTTGATACTAAAATTGAAAAACCTATAATAATGTCCGCAGAAGTCAATCAAACAGTCGAAAGTTTCAAAAATGTACTAAAATGCACGTCAGATATCGACGATCACATGAAAGTCGATATAATCGACACTTTAATCGAATTATATAGTTTAAAAACACCTGACTATGAGAGACATTTCGATAGTAACAGAATTTTCAATTGTAAACGTTGCAATAAAATCTTTGCGAATCGTAAAGAACAGAAAAAACATAATTGCGCAAACCCTATTTTGCGAAACGTAAAAATTGTGTACACTAATCCTAAGAAACGCGATCAAATCGAATCGTTCCAATGCCGAATTTGCCGTAAAAAATTCTCAAATCTAACGGTTCTAGTATCGCACGCATGTTTCGTTAAATTCACGCGAAAACGTATGCAAAAAAGTGAAAAACCGCTAAGCAAACAATTCACTTGTTACGAATGCAGCGAAAAGTTTGATTTTTATTCCGAACTAGTGAAACATCGTGAAGACACTTCACATGCGGATGGCGTTGTTCTGAACGAAAACCCTGTTAAAGTAAACCTGCCAACAACGGATTTAAACGAAATAAATGTTGCAATCCGTTCGATCGACCCAGACAGTGAGATAGCGACGGTTGAACAACCGGTTGAAGAGAAATTGAAACATTTATGCACGAAATGTGGACAACGTTTCGAATTTTTCAGTCAATTGGTTCAACATAATCGGATTTGTAAACCGCCACCGATTCTAACTTGCCCGGTGTGTTCTTTGGAGATGAAACGGGCGAAATTCACAGAACATATGAAGATGCATAATAATGACCGGACATATTGTTGTGAGTTTTGCGGCAGAAGCTTTAAATTCGGCCGTCATTTTAAGCGGCACATGGAGATTCATATGGATATTAAACCGTATGATTGTAATGAATGCACAAAGAAGTTCCGACAGAAATCTGCGTTAAAAACGCATATGTTAATTCATTCAGGGGAAAAACCGTATATGTGTGAGGGGTGTGGGCAAAAATTCCGCCAGCGGGGAACACTGACGTTCCATTTGAAGACAAAACCATGCGGGAAAAGACCGCGAAACTAG
- Protein Sequence
- MANNDANETGGVCRTCMSTDNLESLYQDCDSDLCLVEMLMSCTLVQFSKNDGLSTQICIDCIREINRSYEFALKCQETDKKLRIQLENNQNEVAISTFEIEKPTEVYVITEPETIEETQVKYEIELANDDVSNELNDANSETENYPSVKSKIKRGKTKTPPYECKKCCEQFPVYYLLKEHYKKAQHPKTGYEKRPCPTCANIVLSYLNLKYGAHGYATEAPVNKQLLPVVQEYDCCVPGCNSNQVNNTQLYYHPLPSDTRLRELWLETCNIVERDPVITETFHVCGKHFDSSQYLQNYQLLQGSIPKIIPNRTKPSDSKSNTKTISNNVVINNAAPALNMLTLNKEVRERINDSKVQKFNVSLRNDKLSHLLLVLDQYKTTLDQSESKPIVYNSVDPILNKKLFDMIDVSTLPIPNVTQTPEETYPVVINKITSTGEEITMTIKSSKRKHQLQIPKPITYDFTQVCRICLENGDLKHIYEEIIDEICVNELLERYTSFMMLENSNLPSQICTKCLVNLKQTHEFFKKVDRSCTIYQNRLRSQLLDQSDLLTYKQKYFTPLQIPVNTEDLEAPEMQEEEIHKIPEETSESIVENNGNKVVIDLEPIRTIEDIMDTGFNDMVNESIPMNADEFICLKCEESYENFLLLSKHICVFTPEPAAFLTDYTLPGCKNNSEINWDVEFFRIPSGKSSKGVPDPQILKRRQCWIEALQIDDSDQHTLKNGRICSDHFLIGQPIRFEQVDHPDWGIPTISHPEPEPDIIPSNLEPELTNKECEEFNPVSIASYRLKHEPNKRNAVCSCHFKDGSKQNLPEYFLRNINIHFDCFPVVETPKRLKFRIFKPTETSNIAQIRDLLSRVDKKPKPTKKRASPRIVFKELEPVIDLDLSDLVVESKVEVFVPKSLTTCGINTCAHSSENSKCEWIKMPQVDKLRNQWIEQIGKFGDKLRSNSLICTCHFEDENDRMRGPTIFYANVDVSYNNDELNKIKQSDSDIDEEPHTEKVQVQVADFVDSPSHKQDDTLETTLIQMLNSTPEQITASLNLDTNLKLYNFKKTCRICLNNSPSRNIYEDHIEDITIVDMLQQVTCSQISETDKLPKLVCTNCVQQIFYAYKFLKKFVSSNKKLVEYVNFCEEHVNTITDLQHSIHVDHCYDSFRNPQLAEPEYVNPDLCDGEILETDPLAMESSLSPDFEHEPNARYLPVIPAGFVQCYPERSNKSNMSEIPIISADFPSYLVNMADCDVDESDKNITADILVRNGIEIANTSNNIEFDVPLTISGKSLLQNEVNEVSLLRSEEFDTKIEKPIIMSAEVNQTVESFKNVLKCTSDIDDHMKVDIIDTLIELYSLKTPDYERHFDSNRIFNCKRCNKIFANRKEQKKHNCANPILRNVKIVYTNPKKRDQIESFQCRICRKKFSNLTVLVSHACFVKFTRKRMQKSEKPLSKQFTCYECSEKFDFYSELVKHREDTSHADGVVLNENPVKVNLPTTDLNEINVAIRSIDPDSEIATVEQPVEEKLKHLCTKCGQRFEFFSQLVQHNRICKPPPILTCPVCSLEMKRAKFTEHMKMHNNDRTYCCEFCGRSFKFGRHFKRHMEIHMDIKPYDCNECTKKFRQKSALKTHMLIHSGEKPYMCEGCGQKFRQRGTLTFHLKTKPCGKRPRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01040166;
- 90% Identity
- iTF_01040166;
- 80% Identity
- iTF_01040166;