Ning005010.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000642.1:2271-6023[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.01 0.81 10.3 4.6 2 23 225 247 225 247 0.91 2 11 0.00063 0.051 14.1 0.9 3 23 328 349 327 349 0.96 3 11 5.9 4.8e+02 1.5 7.6 3 23 446 467 445 467 0.95 4 11 0.095 7.7 7.2 0.0 2 20 528 546 528 548 0.89 5 11 0.00053 0.043 14.3 1.3 2 23 622 644 622 644 0.97 6 11 0.11 9.2 7.0 0.7 2 23 666 689 666 690 0.88 7 11 0.0081 0.66 10.6 3.7 2 23 747 769 746 769 0.96 8 11 0.1 8.5 7.1 4.2 3 23 784 805 782 805 0.92 9 11 0.0008 0.065 13.7 0.6 2 23 880 902 880 902 0.92 10 11 3.1 2.5e+02 2.4 1.8 1 23 996 1018 996 1018 0.97 11 11 6.8e-05 0.0055 17.1 2.6 1 23 1036 1059 1036 1059 0.96
Sequence Information
- Coding Sequence
- ATGATGACATCAACGCCAAGTCTACCAGCAACGTTGTGCTTCTCGTCGCCAACGTTGTCGACTTCAAACGGTTGTGATGAAGACGGCACGGCAACGGCAATGGCAATGGCAACAGCGTCTCAGGAGCCGGCGCTCTCGCTGCGCCTGGTGAAGCGTCCGCTGACGAGCAACACCGATTCGTGCAAAAAACGCCGCAAACAATCGACGCCGATCCGCATCTCGACGACGGGACTGCTGGCCGACGAAGACGAGGAGGAATCCGAAACAAGCAATGGCAATGGCGGCCACTTTGAAGGTAAGCTCGGTCTGTCCTACCTGTCCTCCCCCATACAGTCTGCATCGGCACCGCTGTTCGAATCCACCGACACCAACAAATTACCTGTTGCTCTCGCCGCCGATGAACGTTCGCACATTAAAATCGAACCACCGTTCGGTACATGCGATATGTCACTGCACGCCGACCAACCAGATTATCCGGTTAATCTGTCTGGCAGCCAAAGTGTACCGTTATGGTTGACCGATATGCAGCAAGGGAAAACCACCGATGACTGGCTGGGCGTTGCAGCGACCACTTCTTTGCAATCCATCAATCGGCCATCGTATTATCCAGCGACCGGTGATGGTTCGAAAATTTTGAATCAACCACCTATTCGCATATTCAACCCTGAGGCGTATTGCGAACTGTGCAACAAAGAGTTTTGTAACAAATACTTTTTAAAAACGCACAAAGCGAATAAACATCGGATATACAATGATCCACCTGTACCAGAACAAGTTGGCATTGGAGTTGGAGTCGGTGTCAACGTTGGCTTAGGCATGCCGGTCACCGTACCTAATTTCACAACGCTAACTTTAAAGAAACAAACAACATGTCTGCCGCCGTTAAATTCAGACGGTACACCAGCATCATCGATTCTAACCAAAAGTGACGCGGACAAACAACAAACGGCATCGATGAGCGTGGCCTACATGAACGAACCATGTGACATTTGCAGTAAAACCTTCTGCAATGTCGTTGCGCTACAAACGCATAAATCTACCGCACATGGAATCGGCGTCGCTGAGCAAGACAAATCAACGCACGACGAACAACTCGGCGAGTACATTGGTGCTGAAACAGAAGACGCTGCCGACAAACTGGAAACGGATAAAAAACTAAACAGTCTGAATGACGGCGAAATTAGTGTAACAATGACGGAAATCGTGCGACCGATCAAAGAAGAAGTTGCGCCGCCACCCGAACCGGACGAGACGGAACCGCCGCGGGAGAACAACGTCGTCGAGTATTCGGTGAATCATTTGCGACGTCTCGGTGTCATGAATCCGGAAGCGTTTTGCGAGATCTGCTGCAAGGAATACTGCAACAAGTACTTTCTTCGTACGCATAAAATGAAGCGACATGGTATTTTAATAACGGACGAAAACTCGAAAGACCCAAACGGCAAAGATTTGAAACTGGAACTGTCGATCAGTAACAATTGGTATCAGATCCAGACGAGTCCATTGAACTTGATTATGGGCGAACAACAGAATACGAACAGTTCAAGCTCGTACGGCGAGAAGAAGTCGGCGAATGACAATGAGTGTGAGATTTGCGGATTGCGATTCCAAACGTCGTATATGGCGCAAGTGCATGCTGCCACCGCACAGTGTAAAAGAGAAGAGCCTAATAGTGATGGCGCCGTTGGTGATTTCGTTATCAAAACGGAGGAGGGAATGAACAACAACAACAACAATAACAATCAGAAGAATGGTCCTGGTTCAGGAACGTCTGGCTCAGCGGATTCCATCAGTGAAGATCTACAAAAGCTACAGACTATGATTTTACAATTAAACGACTTAGACGTAAGTCGCGTTAGTGCCACGTGTAATGTGTGCAACAAAGAACTAGAGAATCGATATTATTTACACGTGCACATGATGACCGAGCATGGGGTGCTCTTGGAAGACGACGTCGACAAACAAAACGTTGACACATCCAACGATTTGTTTGCAACGTGTAAGATATGCGGTCGTGACGGATTCTCAACGTTAGACACGTTGCGGCAACATATCATCGAATCTCATCACGATCCTAGTCTACCGACGGCGTCACTGCCACCGTTGCAAGACACCAAAGACGATGGCCTCGGTGACTTTCCGCATATCAACGCGGAGAAAACGGCGCGTCCGATAATGCCATCGCCCGTCGTCGCTGGCGAACGTCGCGTTTCTGTCTCGCACACGCCGACCAGCAGCTATTGCGACATTTGTAATAAGGAGCTGTGCAACAAATATTTCATGAAAACTCACATGCAACGGATGCACGGCATTGAAATTGAGAACGGCGCACAGATTGGCGGGGTTATTTGTAATATTTGCAACAAAGAATTATGTAGTAAGTACTTTTTGCGCGTACACAAACACAACACACATGGAATTGTTGAGGATAGCTCGACGGGATCTACAACTTTACGACTACCTAATGAATTAGATAATTTAACTCAACAACCCCAACAGCAGCAGCAGCAACAACAACAACAACAACAAGTTTTAACAAGCACAGAACCGTTCAACACCACCTCACCGTTAGACCCGTCACTAAAACCGGCTGATTTATCCGATTTGAGCAACCGGTACTTCACGTACTTCACGGAAGTATGCACTATCTGCAGTCGACGTTTTCGCAGTACAAAATGGTTGAAAACTCATCTAATCGGTGAACATGGTAAAGCTGGCATCGACAAATGGAATGAATTAGAACAACAATTACAAAAATCTGTCACACATCAACAACAACAGCAGCAACAACAACAACAGCAAACAACGCGTACTAGTAAACCAAATACCAACAACAACAACGGTCGTGACCGAAACAGTCCAACGTTACGTATTCCAAACGGTAACCAGAACCAACAAAATGGCGCAAATAATGGCCATTTAAAGCTGGGAGTGCAAAATGTATTGTCGAATTTGTTTGGTTCAGATGAGTCGAATGTGAAACAATATCATTGTTCATTTTGTTCGTTTTCAACGCCGGTCCTAGCGTTTTTGTTCGTTCACGAGAAGAGTCACGTGACAGGGTTGCCAACTAGTGCAGAGACGTCGACAGACGGTGCATCGACGTACCAGTGTACCGTGTGCACGCAAACGTTTCGTCAAGCGGATAAACTGCATCGGCACGTCATGCAGCAGCATCCGTTTCTATCGTTGGGGAGTTTATTTGGGAATTTATCGCAATCACAGTTTCAAACGCCCGATATTACTGAAGCACCGAAAGTAGACGCACAAGATGGCGGCACAGCGTTGTTGACATCAGAGTCACCAGAATTAGAGCACCAGTGCAGCAAGTGCACGCAGTGTAACAAGATGCGAAAAGCGGCGACGGCGAAGACAGGCCGCTACCAAAACGAATTGAGCGCAGAAGTGAGTTCGACGCTTAAAGACGTCTCGAAACAACGACAGCTACCAGCAACGTATGCACTGCCGCAACGATACCAGCAACAAACCAACTATATGATGCAAGCGTTCCTAATGGACGAGCCAGCGACTTCGGGGCCGGTGATAACATCACCGGAATCACCGACGATATCGCCACAAATAACCAGAACAGATGTGACCACATGCTCTTCGTCGTCGCGATCCGAACAACAATTGCACAATAACCTAAAAAGTGATTCGGACCGGAAATTCGCACCTTCTATCGTCTTCCTGCCCGTCCTCGAGAGGCAGACAGCTCCATTGACCGTTTCCTTTACGTTGACTCCCGCTTAA
- Protein Sequence
- MMTSTPSLPATLCFSSPTLSTSNGCDEDGTATAMAMATASQEPALSLRLVKRPLTSNTDSCKKRRKQSTPIRISTTGLLADEDEEESETSNGNGGHFEGKLGLSYLSSPIQSASAPLFESTDTNKLPVALAADERSHIKIEPPFGTCDMSLHADQPDYPVNLSGSQSVPLWLTDMQQGKTTDDWLGVAATTSLQSINRPSYYPATGDGSKILNQPPIRIFNPEAYCELCNKEFCNKYFLKTHKANKHRIYNDPPVPEQVGIGVGVGVNVGLGMPVTVPNFTTLTLKKQTTCLPPLNSDGTPASSILTKSDADKQQTASMSVAYMNEPCDICSKTFCNVVALQTHKSTAHGIGVAEQDKSTHDEQLGEYIGAETEDAADKLETDKKLNSLNDGEISVTMTEIVRPIKEEVAPPPEPDETEPPRENNVVEYSVNHLRRLGVMNPEAFCEICCKEYCNKYFLRTHKMKRHGILITDENSKDPNGKDLKLELSISNNWYQIQTSPLNLIMGEQQNTNSSSSYGEKKSANDNECEICGLRFQTSYMAQVHAATAQCKREEPNSDGAVGDFVIKTEEGMNNNNNNNNQKNGPGSGTSGSADSISEDLQKLQTMILQLNDLDVSRVSATCNVCNKELENRYYLHVHMMTEHGVLLEDDVDKQNVDTSNDLFATCKICGRDGFSTLDTLRQHIIESHHDPSLPTASLPPLQDTKDDGLGDFPHINAEKTARPIMPSPVVAGERRVSVSHTPTSSYCDICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVEDSSTGSTTLRLPNELDNLTQQPQQQQQQQQQQQQVLTSTEPFNTTSPLDPSLKPADLSDLSNRYFTYFTEVCTICSRRFRSTKWLKTHLIGEHGKAGIDKWNELEQQLQKSVTHQQQQQQQQQQQTTRTSKPNTNNNNGRDRNSPTLRIPNGNQNQQNGANNGHLKLGVQNVLSNLFGSDESNVKQYHCSFCSFSTPVLAFLFVHEKSHVTGLPTSAETSTDGASTYQCTVCTQTFRQADKLHRHVMQQHPFLSLGSLFGNLSQSQFQTPDITEAPKVDAQDGGTALLTSESPELEHQCSKCTQCNKMRKAATAKTGRYQNELSAEVSSTLKDVSKQRQLPATYALPQRYQQQTNYMMQAFLMDEPATSGPVITSPESPTISPQITRTDVTTCSSSSRSEQQLHNNLKSDSDRKFAPSIVFLPVLERQTAPLTVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039715;
- 90% Identity
- iTF_01041319;
- 80% Identity
- -