Basic Information

Insect: Nebria ingens
Gene Symbol: -
Assembly: GCA_018344505.1
Location: JADQWA010000061.1:157634-163037[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0091 0.73 10.4 6.8 1 20 408 427 408 430 0.96

2 7 7.7e-05 0.0062 16.9 0.9 1 23 436 458 436 458 0.96

3 7 0.00032 0.026 15.0 2.8 1 23 464 487 464 487 0.93

4 7 0.00022 0.018 15.5 0.8 1 23 493 515 493 515 0.98

5 7 0.11 9.2 7.0 1.0 2 23 522 544 522 544 0.91

6 7 0.0013 0.1 13.1 0.1 3 21 624 642 623 643 0.94

7 7 2.4e-06 0.0002 21.6 0.2 2 23 695 716 695 716 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0091	0.73	10.4	6.8	1	20	408	427	408	430	0.96
2	7	7.7e-05	0.0062	16.9	0.9	1	23	436	458	436	458	0.96
3	7	0.00032	0.026	15.0	2.8	1	23	464	487	464	487	0.93
4	7	0.00022	0.018	15.5	0.8	1	23	493	515	493	515	0.98
5	7	0.11	9.2	7.0	1.0	2	23	522	544	522	544	0.91
6	7	0.0013	0.1	13.1	0.1	3	21	624	642	623	643	0.94
7	7	2.4e-06	0.0002	21.6	0.2	2	23	695	716	695	716	0.97

Sequence Information

Coding Sequence: ATGCTCACATGGTGCCAGCATCAAATACAACAATCCAACAAGTTCTGCAAGCAGTGTCTTACATCGCACATCTCCCTAAAAAAATACACCCATCAGTTCATCAATACACCACCAAAACTATTCAACATACACCATCATAAAATGAAACTAACCCCAACTGTGACGAATCACACAACAAACAATCAACCGATTTGTAGTGAAATGCCGACTACTCAAGTTCCCAGCGACTTACAAGTGCAAATGCGACGAAAACGCCAAAGTACAACAGAAATGGATACAATTGCACCGAAACTCTACGCAGATGAAACAAATAATCACGAGAACTCGACAGGTTCCTCTCAAAACACAACCAATTTCAGTTTCGAGTCGATTTATACAGATCGACCTGCCACCTATACATCTCTGTTGAATTTAACGGAAGACGAACTGTTGAAATCGAATTTATCGAACACGTTTTTGAAAACGATCTTAGGGGAATACTCAAAACAATTAGATCTTGAGTTGATTGGGGATGAAGTGTTGACTATTTTAGAAAATGACCAAAATGAGGTGTTTAGTGAATCGAATAACTTAAATATATTTCAGAGCTCAATGGAAACGCTCGAAGATCAAATAACACAAAATGGCGACGTTCCTCCAACGTATTCAAACGCATCACCAATATTTTCAGAGATTGATTTAATTTTAGCCCCAACTAATCTTAATTCAACTGATTTTATTAATACATCAGAAACCTATAACAATTTCGAAACACATTTCGATATGAATCTAACTTCATATCCTAATTACTCCGAAACTTCTGAATCATCAACAATTACAACGAATATTTTCACCAATAAACACCACATAACTTCAGACGCTTTAGATATAAATTGTTCTACATTAGATTTAACATCTATGACTCCATTCACGGCAGAGAATATATCTGCGGAGGTGTCTGAAGTTAGTAACATTGATAAAAATATGGGTCAGTGTGTAAACGAGCAGCGGAGTGAAGTTCGTTACTCTAAACGCGACATGTTTTGTAGGGTTCTAACTGATTTAGAATCGGCGTCTCGGCACACAAAACACAAATACAATTCACTATGTTTAACGGATTTATTAGTGCATGGGAAACAACATAAAATGAATTCTGATTTTAGTGAAAATAATTATCTAGCACCAGATCCAAAGTCACCAGGGCAATTCGTTACTTTTATAGTCAACCACAAGCTGAAGTTTTATAAGTGCAAAGTTTGTAAGAAACAATTTTGCGATGGTAAATCCTTGTACCGTCATATGGCGTGTCATGTTTCTGATAAGAGTTTCGATTGTGATATTTGCGGCAAAACGTTTAGAATTAGTCGATACTTGTCTATACATAAAAATAATCATAAAAAACAACGGATGTTTAAATGCAGCGAATGTAATAAGTCGTTTAAAGCGAAAGAAACGTTGCATATTCATGAATTGCAGTACCATCAAGATTTGAAGCCGTTTTCGTGTGGTATTTGTGGGAAAAAATTCGCAGTCGTTCAGTATTTTAGAGTACACACGAAACGGCACACTAAAGAAGCGGGTAGAGTTTGTTATATTTGCGGGAAAGTATTAAAAAATGAAGCGTTATGCTTTAAACACATAAACGATAAACATTCTTTAAAAGCTACTACGAATTCACACCCTTGTGAAGTTCGTGAAGATGTTATTGACGTTGTAGAGAATCAACACGACGTTTGTGATGTTTATAAAGTATCTAAAGACACAAGTGAGGTCTATACTGATTTAGAAGTTAATAATGAAGTTAGTAACACATCATTACGAGCTCAACAGTTTGAATTTGAGTCTAAACTGAATGAAAACAATATAGAAGTGCATATGAGAAAGAAATTGTGTGAACTATGTGGTCAATCATTCCCAACTTCACGCCTATTAAAGTTACACGTACTTAAAAACTGTTCGAACCCCGTTCAGAAGAAGAATCAATTATTTCCAGTTTCACTTACCGAACAACAAGTCCATGAATGTGAAGTTCGTTGCAAAACAGTCTCGAAAAATCTGACCCATTCCCGTTGTAAATTAACCGATGAACATCGGCAAACGAACGAATGTGAAGTGTGCGGCAAATCGTTCCCTGCCTCACGCAACTTGCAATCACACATGAAGTTGCACGGTGCCAAACAATTCAAATTTCTATGGATAACGTGCTCAGAAGTTCCTGATGTGGACAACTTGCTCAGGAGTTCCTGGAATCCAGGATCCGATCTATGA
Protein Sequence: MLTWCQHQIQQSNKFCKQCLTSHISLKKYTHQFINTPPKLFNIHHHKMKLTPTVTNHTTNNQPICSEMPTTQVPSDLQVQMRRKRQSTTEMDTIAPKLYADETNNHENSTGSSQNTTNFSFESIYTDRPATYTSLLNLTEDELLKSNLSNTFLKTILGEYSKQLDLELIGDEVLTILENDQNEVFSESNNLNIFQSSMETLEDQITQNGDVPPTYSNASPIFSEIDLILAPTNLNSTDFINTSETYNNFETHFDMNLTSYPNYSETSESSTITTNIFTNKHHITSDALDINCSTLDLTSMTPFTAENISAEVSEVSNIDKNMGQCVNEQRSEVRYSKRDMFCRVLTDLESASRHTKHKYNSLCLTDLLVHGKQHKMNSDFSENNYLAPDPKSPGQFVTFIVNHKLKFYKCKVCKKQFCDGKSLYRHMACHVSDKSFDCDICGKTFRISRYLSIHKNNHKKQRMFKCSECNKSFKAKETLHIHELQYHQDLKPFSCGICGKKFAVVQYFRVHTKRHTKEAGRVCYICGKVLKNEALCFKHINDKHSLKATTNSHPCEVREDVIDVVENQHDVCDVYKVSKDTSEVYTDLEVNNEVSNTSLRAQQFEFESKLNENNIEVHMRKKLCELCGQSFPTSRLLKLHVLKNCSNPVQKKNQLFPVSLTEQQVHECEVRCKTVSKNLTHSRCKLTDEHRQTNECEVCGKSFPASRNLQSHMKLHGAKQFKFLWITCSEVPDVDNLLRSSWNPGSDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -