Basic Information

Insect: Nebria ingens
Gene Symbol: -
Assembly: GCA_018344505.1
Location: JADQWA010000273.1:64042-68270[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.013 1 9.9 0.1 1 23 64 87 64 87 0.92

2 13 0.16 13 6.5 0.1 2 19 127 144 127 144 0.96

3 13 6.3 5.1e+02 1.5 0.1 1 8 154 161 154 179 0.65

4 13 0.00077 0.062 13.8 1.1 1 23 185 208 185 208 0.95

5 13 0.64 52 4.6 0.1 1 23 694 717 694 717 0.86

6 13 1 83 3.9 0.3 3 23 787 810 785 810 0.88

7 13 6.8 5.5e+02 1.4 0.1 1 12 816 827 816 839 0.82

8 13 0.012 0.99 10.0 5.1 1 23 860 882 860 882 0.98

9 13 0.00017 0.014 15.8 0.7 3 23 887 907 886 907 0.98

10 13 0.00051 0.042 14.3 0.5 1 23 913 935 913 935 0.98

11 13 1.5e-05 0.0012 19.2 0.9 1 23 941 963 941 963 0.96

12 13 6.4e-05 0.0052 17.2 0.6 1 23 969 991 969 991 0.98

13 13 3.1e-06 0.00025 21.3 6.5 1 23 999 1021 999 1021 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.013	1	9.9	0.1	1	23	64	87	64	87	0.92
2	13	0.16	13	6.5	0.1	2	19	127	144	127	144	0.96
3	13	6.3	5.1e+02	1.5	0.1	1	8	154	161	154	179	0.65
4	13	0.00077	0.062	13.8	1.1	1	23	185	208	185	208	0.95
5	13	0.64	52	4.6	0.1	1	23	694	717	694	717	0.86
6	13	1	83	3.9	0.3	3	23	787	810	785	810	0.88
7	13	6.8	5.5e+02	1.4	0.1	1	12	816	827	816	839	0.82
8	13	0.012	0.99	10.0	5.1	1	23	860	882	860	882	0.98
9	13	0.00017	0.014	15.8	0.7	3	23	887	907	886	907	0.98
10	13	0.00051	0.042	14.3	0.5	1	23	913	935	913	935	0.98
11	13	1.5e-05	0.0012	19.2	0.9	1	23	941	963	941	963	0.96
12	13	6.4e-05	0.0052	17.2	0.6	1	23	969	991	969	991	0.98
13	13	3.1e-06	0.00025	21.3	6.5	1	23	999	1021	999	1021	0.98

Sequence Information

Coding Sequence: ATGTGGGAACTAAAACTTGCGAAAAAAGCAGAACGGGCCTTGGCTAAAATTAAAACTGAGTCGACAGATATCGAGGAAGAACCATTACATGAAGATGATCCATACCGTTTTGAAGAAGTTAAACACGAAATAGATCCCTTGATCATTAATCAAATAAAAATAGAACCGCCTGATCGTGAAAAATTAGATTTTATTTGCGCTATTTGTGGTTTGGATTACGCGTTCGATGACCACTTAGAAAAACATATATTTTGGGTGCATCGGCCGTTAGCGTTAGAAGTAAACTCAGGCGCTGAAATATATTGCTCAAAGTGCCGAAAATGGTACACCAAAGAGTGCGATTTTGAGAACCATTGGCCGTGCTTTGCGGTTCAAGGTCAATGCCCTATATGCAACATAATATCACCGACAAAATATCATTTTTTGGTCCATGATCTAACTTGGCTAAACCAAAAATCATATCAATGCAATTTATGTAATATAAATACTGCCTTGTTTCCGTTATCGCAAATAAATATTCATATGCAATTGGTGCATAAGAAAAGAGGAATATACGAATGTAATCATTGCCAAATTATTTTCCCGGTGAAGACAAGTTTAACGCAACATGTTTATAAAGAACATGATGGAATGTTTTATAAACTTAGCCCTGAATTGGCTTGGATTCAACCATCAGAAGTTTCAATAACTGGTAATACGATTCCGAAACGAATAGATTTACCACTAATAGTTAACAAATCAAACAGATCAACATATACGCGCAAATCAATCAATCCAGTTCCTCACAAAAATGATGAATCACCTGTAACATCTTCTGAAATGTTACCAGTGTTCACCCCAAAAATATCTATTAACCCAAACATATTTATTTGTAACCAAGTCAAAGAAACTCCACTTTCGGTTATACCATTTACAGACCCTGTAATGGAAACGGAAAGCGACCAAAATGAATCCGATGATGAAAATGCTTGGTTTGCGACAAAATCCATTACAGATAGCGACAAAACTGATACAGAACCATGCCAAAATGTGGAAATCTACTGGGACAAAGATACTATTTCAAACGAATTAATTCCACGACGAAATACAATTGAATCAGACATAGAACTTAACAAATCAAAGAAAGCTATTACATATAAATCCGTCAAATCGAAAACGAATAACACGAACAAAATTGATATAAACACGGATCCAAAACAATCGAACACACCCAATACAGATAAATCGCTTTCAATCATTCCTAAAACGAATGAAACTCAGTCTATAGTTACAGAAACCGTAATTCCCAATTCTTCTAAAACGAATCATAGTCCTAAAACTAGTAACAAAGATAAACCCACCTCAGATACTTCTGAAACAAATCAAACTGTTTCTGAATGCGTACTTGAGACCAACCCAGACACATCTATTATACACACAGATGTATCTATAACGGATAAACCCGTCGAAGATCTTAGGACGAAACCAATTATAATAGACGAATCTGATTCAGAAACAGATTTTGAGGGTTGTAGTTATAGTCAATGTGGTCCTAACGCTTTCAACAAAGAAAAATCTATCGCAGACTTACCGGAAGCGGAAATAATCGTCTTAGATGTACCTATTGCGGATGAATCAACTAAAAATAAGTTGAAAGATTCGACACCAGTTACTAAAAATAATTTAGCCGTTTCCAGCACGGTTAAGCATTTAACGGATAGAAGTGTCTTGGTGGACAAATCTATTACAGAAGTTTCGAATTTAAACGTTTGTATCCCGGATAAAGGTGCTACAACGTGTAATTCCGTTACTGAAGTGGCTAAACCGTCGAAATACTATTCTGTACTGGATCAAAGCATCCTCGATCGATGTTTAGCACCGAATAATAGCAGAGCTATAGATTTGCCTACATTTTATTTTGAGCACGTTTCAGAAAATAATCAAACTTTAGACGACGGTTGGAAAATACCGTATACAATTGAGAACTTAATTAGTTCTGATCCAGCTCCTTTGTTTATACACCATGAATTACCAGCAAAACAACCGAAACGGGATAAAAATATGTGTACTGCTGCCCAAATCAGAAAACTATGTAAGATTTTTATTTGTGATATTTGTGATATGGACTTTTTGACTGCTGGGGATCGGAGGCGACATAGTTTATTGGTCCATAGGCCTTGGACAATTGAAATAAAAGATGGGGCTTATTGTTTCAAGTGTCGTAAATGGTTTAAAGATGAATTTTTATTTCAGGGGCACTCGCCTTGTTATATATTTGCTGTTAAAAAGCGGTGCCCCATTTGTTACGTAGAAAAACCGACAATGGAACATTTTAAACTTCATAATCTCGTTTATTACCCTTTGGAAAACGCTTATTGGTGCAAATTATGCGAAGTGAACACTACTTTCTTTCGTTTGGAAGAATTAAATACACATCGCCAAGAAGCACACAAGAAAAATGGTGTTTTTGAGTGTTTGATGTGTAATAATACATTTGAAAATATAAAAATAGCGAAAGATCATATTTTAGACGTACATCAAAAACAAGGTGTCGTCACTGGAGTGAATTTAAAAACAACGTCAGTTCCTTTGCGTTTATATAATTGTAAAATATGTTCGAAAACATTTTTCGAAAAACGTCTTTTCGATAAACATCATCAAGTGCACGAAGGCGCCTTGTGCAGTGTTTGTGGCCAATCATTCAAATCGAAAGGGCTGATGTTCGAGCATTTAAATAAACACACAAAACAACAAATATTCGAGTGCAAAGAATGCGATTCAACATTCGCAATGCGAAAATATTTAATACAACACGCAAAAATCCACAAAGTGAAAAAAAACTTCATTTGCGAAGAATGCCATCAATCATTTACGCAACAAACTTCACTGATCTACCATATGGCTGCTCATACCCAAGAAAACATATTCAAATGTGCGTTATGCGATATTAAGTTTGATTTACAAAGTAAACTAACATCACACATGCAGATTCATATCGCTGATGGTACGAATCCGCATGTTTGCAAAGTTTGCGGGAAAAATTTCTCGCACAAATGCAATTTATTGGTGCATATGCGAATGCATCCAGATAATAAAAAAGATAATAATAAAATGGATGTAGCGGATAAAAATGATTCGTCTGAGGAAGAAATGTTGATAGATGAATCTGCGAGTTCGGAGGAAGTAAAATCAAATGATACGGAGAATACGTAA
Protein Sequence: MWELKLAKKAERALAKIKTESTDIEEEPLHEDDPYRFEEVKHEIDPLIINQIKIEPPDREKLDFICAICGLDYAFDDHLEKHIFWVHRPLALEVNSGAEIYCSKCRKWYTKECDFENHWPCFAVQGQCPICNIISPTKYHFLVHDLTWLNQKSYQCNLCNINTALFPLSQINIHMQLVHKKRGIYECNHCQIIFPVKTSLTQHVYKEHDGMFYKLSPELAWIQPSEVSITGNTIPKRIDLPLIVNKSNRSTYTRKSINPVPHKNDESPVTSSEMLPVFTPKISINPNIFICNQVKETPLSVIPFTDPVMETESDQNESDDENAWFATKSITDSDKTDTEPCQNVEIYWDKDTISNELIPRRNTIESDIELNKSKKAITYKSVKSKTNNTNKIDINTDPKQSNTPNTDKSLSIIPKTNETQSIVTETVIPNSSKTNHSPKTSNKDKPTSDTSETNQTVSECVLETNPDTSIIHTDVSITDKPVEDLRTKPIIIDESDSETDFEGCSYSQCGPNAFNKEKSIADLPEAEIIVLDVPIADESTKNKLKDSTPVTKNNLAVSSTVKHLTDRSVLVDKSITEVSNLNVCIPDKGATTCNSVTEVAKPSKYYSVLDQSILDRCLAPNNSRAIDLPTFYFEHVSENNQTLDDGWKIPYTIENLISSDPAPLFIHHELPAKQPKRDKNMCTAAQIRKLCKIFICDICDMDFLTAGDRRRHSLLVHRPWTIEIKDGAYCFKCRKWFKDEFLFQGHSPCYIFAVKKRCPICYVEKPTMEHFKLHNLVYYPLENAYWCKLCEVNTTFFRLEELNTHRQEAHKKNGVFECLMCNNTFENIKIAKDHILDVHQKQGVVTGVNLKTTSVPLRLYNCKICSKTFFEKRLFDKHHQVHEGALCSVCGQSFKSKGLMFEHLNKHTKQQIFECKECDSTFAMRKYLIQHAKIHKVKKNFICEECHQSFTQQTSLIYHMAAHTQENIFKCALCDIKFDLQSKLTSHMQIHIADGTNPHVCKVCGKNFSHKCNLLVHMRMHPDNKKDNNKMDVADKNDSSEEEMLIDESASSEEVKSNDTENT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -