Ning015093.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000207.1:968180-976528[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00082 0.066 13.7 1.0 1 23 520 542 520 542 0.98 2 10 0.0044 0.36 11.4 1.9 1 20 547 566 547 567 0.97 3 10 0.52 42 4.9 3.6 2 23 569 591 569 591 0.95 4 10 0.0024 0.2 12.2 0.3 2 23 821 842 820 842 0.95 5 10 0.081 6.6 7.4 0.9 3 23 846 866 845 867 0.94 6 10 0.00013 0.01 16.2 0.7 1 22 1558 1579 1558 1579 0.95 7 10 0.00015 0.012 16.1 1.8 1 23 1580 1602 1580 1602 0.97 8 10 8.2e-07 6.6e-05 23.1 1.3 1 23 1609 1631 1609 1631 0.98 9 10 9.4e-06 0.00076 19.8 1.5 1 23 1637 1659 1637 1659 0.98 10 10 0.00092 0.075 13.5 1.3 2 23 1665 1686 1664 1686 0.96
Sequence Information
- Coding Sequence
- ATGCTCAACCCAAGTGAATTTGATTTAAATGCAACGTGTAGAACCTGTTTATCAATAGGAGAAATGAAGTCATTATATGACAAAGAATCTAACGAAGAATCTTTTGCGGAAATGTTAATGTCTTGCACATCAGTTGAGTATTATGGAAACGATGGCCTGCCGACAAAAATTTGTCTGGATTGTGTTAGTGAAATAAGCCGATCCTACAAATTTTCATTAAAATGTCGAGAATCTGATGACAAGTTGCAGAAATATTTACAAACACTCAACAAAGCAAAGAAGATAGATGTGTTTAACTATACTAAACCAATCACAGCAATAAAATCGGAAGCCAATACCGCCTTAGTAGATTTATCAAATACTAGTGAGGAGCCTAGTACACATGCTCCTCAAATGAATATCAAATATGATACAGAAATCCAGAAATCGTTAAGAGATCCGTTAACAGTTGTTGAATTACAAAATGCACTGGATACAGAAATAGACATATTCGAAAATAAAATTTATTATGCTCAACATTCAGTAGAAGCAAACGAAAATGAAATCGCTCAAAACTGTGATTTAAATTCGATAAAAACTGAAATTAATCATGACATAGACTATTCGTTATTGCTATCAACCATAAGTGATTTGAAATTTGAAAACAAACGCGAAATACCACATTTAACAAATGATCCTCTAGACTTAGGATTGAATGAAATAAATAAATCTACAAACAAAGACGTACATTTAGGTACCGAAAGCAAAAAAATAAAGTTACTTCCGCAGACACAAAATAACACGACAACGAAAATAATCAAATCATCTAATCAACCTAAACACAATTTAAATCCTTTTGTATATTTAGAGAGGATAAATTTAAATATGCTATTATCACAAAATAAACATCTCAAGAATGCAACGGCGATAGAACCTAATAAGATATTAGCAACAAATACTTCGATAAAGTCACAACCGCTCAGGACTAAAAAAAATTATAAATTACGCAAAAGAAAATCTAACACTCAACTATATTATGAATGGACCGACGAAGACTTTTATTCTGATAGTGACTTATCAATAGATGTAGATTTTCGAAATAAAAAATTGAATCCGTGTCGAAACAAACTTACGGATGAGACAATCCAACAGACTGAATTGTTAAACACTTCAAATAAACCCGAGTGCACCGAAGTTAAATTACCTGAGAATCAACAGATAAAAACAACGTCAGAACAAAGTAATATAGAAGTATCGAGTAGTGTTGCAGTATCGACTGCCGCAGATGATATCCAGAATGATTCTTTATCGATTGTCGCGGAAGCAACGAACATGCATTATGCATTAAGAAAACGAACATGCACCAAATCGTATAGTGGATTTGCTGATGAAGATTGCCCAAGCGACTCCAGTTACAATAGTAGTGAAAGTGAATCATCCAATAATGAAGACGACGAAAACGATAGACCAAATAAAAAACAATGCCATAAATCGAAATATGAAATGAAACCAGTAACCACATTAGTTCCTTTTAAACATTGCAACACTCAAATATTGTTAAATCAACTCAAACAAAGTTTTAAATGTTTAAAATGCGATCTGTATTTTCCGAACAAAATTGCCTTACAAAGACACTCAAACAGTCATTCAGGAATAGCATATACCTGTTCTATTTGCGATAAGGCATGCGAGTCAATGTTTCTTTTAAGAAACCACATGCACCCATCATGTTCACATTGCAAGAAAATATTTGGGACTATCATTGACTTAGAATGCCATATGCAAAAGTATCACGCCATTTTCGCAACAGAAAGTAATCAAAGAATACAATCAAATAATTCGAATGATCTAAATCAAGTACCAAGCAATAAAGACCACGAACTATCACACTTTATCAATGATCAAATGAAATTACTCATTTGTAAAAACAGTATTCCTCAATCAAATGCTTTAGATTATCCGAGTGAGGAATTAAATATTGCGAATGGTCCAAATGTTAATAATATAAACAACAACAATGAACTGGTAAATATTGAGTCTCCAAGTGAACATGTAATTGATGAGATCCCCCAACAGGAAGGAAGTATCTTGAATAGTGAAGAAGAACGATTAAATGGTGTGGTAAGTAAGGTATTAAAGAATAATAACCATCAAAGTGATGAATGCCAGAATCAAAGCGAACAATTAATGAATATAATTGAAATACATTCTGAAAGTGTATCACCATCAAATGAGATAAGTGAACGATTAATTATAATTGATGATCAAGATGAAAAGTCGAACAATGCGACAAATGAAAGTGATACTATTATAGAGCAACAAAAAGAAATGTCTACGGTTGAAAACAATCAAAGTGAAGGTGTAGAAAATGTTGTTAGTGGGAAACCGTTCGGAGAAACAAATATTACAAAACCATTTTCATGTTCGAAATGCGACAATTCGTTTCAAATACACTCGAAATTCCATTCAACACAAACATTATACTGTTCAATCTGTGGTAAAGCAAGTGAGTCGGTAACTGATTTCAAGAAACATATGTACTTGCATTACCCTTCATGTTCACTTTGCAAGATGATGTTGCCGGGTTACTTTGATTTAAAACGGCATATGGAAGTACATCACGCAAACATAAATGACCAAAATAATGGCGTCAATCCAAGTCAAGTACTAAGCAATATTTCCAAGCATGAATTAACAAATGAGAAAAAACAACAAAGTAAACAACCGGATATTACGATAACTCCAATTGAATTTTCAAATAAAACTTTATTACCAAATAAAGTAAACCATAGTAAACTACGGAACACAGTGTGTAATCAGAGTGATCAATCACATATTAAAATCCATCAAAGAAAAATAAAAAACCAAAATAATGGCGTCGATCCAAGTCAAGTACCAAGCAATATTTCCAAGCAACATGCATACGCAATGCATGATTTAACAAATGAGAATAATCATCAAAGTAAACAACTAGATGTTACGATAACTCCAATTGAATTTTCAAATAAAACTTTTTTACCAAACAAACAAAACAATACAAATACCAATTATCTAATGATATCATTAAATAATAGTAATGGCGTCGATCCAAGTCAAGTACTAAGCAATATTTCCAAGCAACATGCATACGCAATACATGAATTAAAAAATGAGAATAATCATCAAAGGAAACAACCAGATATTACGATACATCCAATTGAATTTGTAAATAAAACTTTATTACCAAATAAAGTAAACCATAATACACCACCGAACACAGTGTGTAATCAGAGTGAGCAATCACTTATTGAAATCCATCAAAGAACACTAGCAAATAACAAAAGCGACCAATCAAATATAAAACATAGCGAACCACCAATTACTTTAAAGAATCACAGCCACCAATCAAATACAGCAAACAATACAAATATCAATTATCTAATGGTATCATTAAATAATATAAATGGCGTCGATCCAAGTCAAGTACCAAGCAATGCTTCCAAGCAACATGCATACTCAATAAATGAATTAACAAATGAGAATAATCATCAAAGGAAACAACCAGATATTACGATACATCCAATTGAATTTGTAAATAAAACTTTATTACCAAATAAAGTAAACCATAGTAAACCACCGAACACAGTGTGTAATCAGAGTGAGCAATCACTTATTGAAATCCATCAAAGACAACTAGCAAATAACAAAAGCGACCAATCAAATATAAAACATAGCGAACCACCAATTACTATAAAAAATCACAGCGACCAATCAAATACAGCAAACAATACAAATACCAATTATCTAATGGTATCATTAAATAATACAAATGGCGTGGATCCAAGTCAAGTACCAAGCAATGTTTCCAAGCAACATGCATACTCAATAAATGAATTAACAAATGAGAATAATCATCAAAGGAAACAACCAGATATTACGATACATCCAATTGAATTTGTAAATAAAACTTTATTACCAAATAAAGTAAGCTATAGTAAATCACCGAACACAGTGTGTAAGCAGAGTGAGCAATCACATATTGAAATCCATCAAAGAAAACTATCAAATGACAAAAGCGACCAATCAAACATAAATCATAGCGAAACAACAATTACTATAAATGATCACAGCGACCAATCAAACACATCCAACAATACAAATACCAATTATCAAATGGTACCACCATATAATATAAACGAAAATAAAAGCTCAAATACAATTAATCTAAATAATCAATTAAATTTGACTAACCATCTAGGAGAACAGTCAAGTACTATCACTGGTGGATTTTTAAATACTAAGGATTATAGTATTTCATTAAATATTGTGAACCATCAAAGCGCACAAATACATCCAATTAATTATCAAGATGAACTACTTAATTATATAAAGCCTGTTGATCAAACTTTAAATTACCAGAGTAATAAATTAAATATTGTGAATAGTCAAAGTGTATTATTGCATACACAAAGTGAACAATTAAATCCTACAATCTATATTATGCAAAGGCTAAACGAAATAAATACAGAATGCGTATTATCATCAAGTGACGAAAAGAAACAATCAATTAATACTGTAAATCATGAAATTGTGACAAAAGAAAGTGATCATCAAACTAAAAACTCTACGAATAATAACAATCAAACTGAAGAATTAAAACATGAAGATAGCGTTTGTGGTAAAGCAAGTGCGGAAATAAATAATGTAAAGCCATTTTCATGCCCAGACTGTGAGTTTAAATTTTCCAATAAAGTCTATTTAGAAACACATTTAAAACGCTTTGAGTGTGAACTGTGTGATCGTTTGTTCTGCAAAGCTTCCAACTTAAGTAGTCATATGTTTGTACATTCGAATAAAGTTAAACAGTATTCTTGTCCAATTTGTAAGGAAGTATTTACAACCGAATCACACTTAACGGAACATAAACGAATACATGCCAAGACATCAATGTTTTCTTGTACAATTTGTCAAAAACCTTTTTCCGGTAAAAAAAAGCTTAATATGCACATGCGTCTACATACTCATAATAGTTTGGTTTGTTCTATTTGCGATAAAAAGTTCGTTGGGTTTGTTCTTTATCGACACCATATGCTAAAACACTTGGATGAAAAACCAATCGATAGTAGTAGTAATACGATAGTAACACGGAGTGCGTTAAATCGCATCCGTTGTAAAAATAATCCGTCTACATGA
- Protein Sequence
- MLNPSEFDLNATCRTCLSIGEMKSLYDKESNEESFAEMLMSCTSVEYYGNDGLPTKICLDCVSEISRSYKFSLKCRESDDKLQKYLQTLNKAKKIDVFNYTKPITAIKSEANTALVDLSNTSEEPSTHAPQMNIKYDTEIQKSLRDPLTVVELQNALDTEIDIFENKIYYAQHSVEANENEIAQNCDLNSIKTEINHDIDYSLLLSTISDLKFENKREIPHLTNDPLDLGLNEINKSTNKDVHLGTESKKIKLLPQTQNNTTTKIIKSSNQPKHNLNPFVYLERINLNMLLSQNKHLKNATAIEPNKILATNTSIKSQPLRTKKNYKLRKRKSNTQLYYEWTDEDFYSDSDLSIDVDFRNKKLNPCRNKLTDETIQQTELLNTSNKPECTEVKLPENQQIKTTSEQSNIEVSSSVAVSTAADDIQNDSLSIVAEATNMHYALRKRTCTKSYSGFADEDCPSDSSYNSSESESSNNEDDENDRPNKKQCHKSKYEMKPVTTLVPFKHCNTQILLNQLKQSFKCLKCDLYFPNKIALQRHSNSHSGIAYTCSICDKACESMFLLRNHMHPSCSHCKKIFGTIIDLECHMQKYHAIFATESNQRIQSNNSNDLNQVPSNKDHELSHFINDQMKLLICKNSIPQSNALDYPSEELNIANGPNVNNINNNNELVNIESPSEHVIDEIPQQEGSILNSEEERLNGVVSKVLKNNNHQSDECQNQSEQLMNIIEIHSESVSPSNEISERLIIIDDQDEKSNNATNESDTIIEQQKEMSTVENNQSEGVENVVSGKPFGETNITKPFSCSKCDNSFQIHSKFHSTQTLYCSICGKASESVTDFKKHMYLHYPSCSLCKMMLPGYFDLKRHMEVHHANINDQNNGVNPSQVLSNISKHELTNEKKQQSKQPDITITPIEFSNKTLLPNKVNHSKLRNTVCNQSDQSHIKIHQRKIKNQNNGVDPSQVPSNISKQHAYAMHDLTNENNHQSKQLDVTITPIEFSNKTFLPNKQNNTNTNYLMISLNNSNGVDPSQVLSNISKQHAYAIHELKNENNHQRKQPDITIHPIEFVNKTLLPNKVNHNTPPNTVCNQSEQSLIEIHQRTLANNKSDQSNIKHSEPPITLKNHSHQSNTANNTNINYLMVSLNNINGVDPSQVPSNASKQHAYSINELTNENNHQRKQPDITIHPIEFVNKTLLPNKVNHSKPPNTVCNQSEQSLIEIHQRQLANNKSDQSNIKHSEPPITIKNHSDQSNTANNTNTNYLMVSLNNTNGVDPSQVPSNVSKQHAYSINELTNENNHQRKQPDITIHPIEFVNKTLLPNKVSYSKSPNTVCKQSEQSHIEIHQRKLSNDKSDQSNINHSETTITINDHSDQSNTSNNTNTNYQMVPPYNINENKSSNTINLNNQLNLTNHLGEQSSTITGGFLNTKDYSISLNIVNHQSAQIHPINYQDELLNYIKPVDQTLNYQSNKLNIVNSQSVLLHTQSEQLNPTIYIMQRLNEINTECVLSSSDEKKQSINTVNHEIVTKESDHQTKNSTNNNNQTEELKHEDSVCGKASAEINNVKPFSCPDCEFKFSNKVYLETHLKRFECELCDRLFCKASNLSSHMFVHSNKVKQYSCPICKEVFTTESHLTEHKRIHAKTSMFSCTICQKPFSGKKKLNMHMRLHTHNSLVCSICDKKFVGFVLYRHHMLKHLDEKPIDSSSNTIVTRSALNRIRCKNNPST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -