Basic Information

Insect: Nebria ingens
Gene Symbol: -
Assembly: GCA_018344505.1
Location: JADQWA010000616.1:30416-32430[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.023 1.9 9.1 1.1 1 23 184 206 184 206 0.95

2 11 0.0059 0.48 11.0 0.9 1 20 212 231 212 233 0.93

3 11 0.00018 0.015 15.7 1.2 1 23 319 341 319 341 0.98

4 11 0.0042 0.34 11.4 0.7 1 23 347 369 347 369 0.97

5 11 0.029 2.3 8.8 2.0 1 23 390 412 390 412 0.97

6 11 0.00051 0.041 14.3 0.9 1 23 418 440 418 440 0.96

7 11 4.7e-05 0.0038 17.6 2.3 1 23 446 468 446 468 0.98

8 11 2.2e-08 1.8e-06 28.1 1.1 1 23 474 496 474 496 0.99

9 11 2.3e-06 0.00018 21.7 0.3 2 23 505 526 504 526 0.96

10 11 0.1 8.1 7.1 3.0 1 23 532 554 532 554 0.97

11 11 0.074 6 7.5 3.7 1 23 560 582 560 582 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.023	1.9	9.1	1.1	1	23	184	206	184	206	0.95
2	11	0.0059	0.48	11.0	0.9	1	20	212	231	212	233	0.93
3	11	0.00018	0.015	15.7	1.2	1	23	319	341	319	341	0.98
4	11	0.0042	0.34	11.4	0.7	1	23	347	369	347	369	0.97
5	11	0.029	2.3	8.8	2.0	1	23	390	412	390	412	0.97
6	11	0.00051	0.041	14.3	0.9	1	23	418	440	418	440	0.96
7	11	4.7e-05	0.0038	17.6	2.3	1	23	446	468	446	468	0.98
8	11	2.2e-08	1.8e-06	28.1	1.1	1	23	474	496	474	496	0.99
9	11	2.3e-06	0.00018	21.7	0.3	2	23	505	526	504	526	0.96
10	11	0.1	8.1	7.1	3.0	1	23	532	554	532	554	0.97
11	11	0.074	6	7.5	3.7	1	23	560	582	560	582	0.98

Sequence Information

Coding Sequence: ATGAAAGACAAAGAAAGCGATGATGATATATCCTATTATGATATGATGTTAACTTGTGTACCTAATTTGATTTCCGAAGATGACCAGTTATCCACATTAATATGTATCGAGTGTCAGGAACATTTAATAGATACGTACGGTCTTATAGACAAATGGATGGAGGCGCGCAAGGTGTTAAATAAATATAAAAAGCAAATGAACTTCACCTTTTATACAGACAATGATACATATATTCACACGAATACAAATAGTTATAATAACCTAAATGATTTAATTACTTCTGTTGTATCAAAAGATACGGTATCGAATCATTCATATTATGATCACACCTATGGAACAACAAATTCGAAAGAGTTTCTTAAGAGAGTAATGGCAGATACAATACTTCCGAAAAATTATATTGAGAAAAAGTCAACAAGTTTAACAAATTGCGATTTCTCCAAAGTGTATTCCGCAATCAAAGCAAATAAACGCTCAACTTATACATTAGTTGATTTAGAACAACCTGATAAAACAGTTTATTTTAATGCTGACGACGAAACGAAAAAATACGTTTGTCTAAGTTGTAGTAAATATTTTAAAAGCGTCACATATTTGTTTATACATTTAGTCAATCATAAACAAAACCAAAAATTCAATTGTAAAAAATGTTTTAAAGTATTCCAATATGAAGCACTTTTAAAAAACCACGAAGAGCGACTTTGTGCTTTTGATGTGAAGCCAATTAATTTAAATGTAGATAAAATCCCGAAAATAAATATCACATTTGAGCCAGGGAAAAATGCGTCGTGTGAGCCGAAAATTAACGCTACTTTTGAGACCGATTTGAATATAGAACCAGGTTTAAGTGTGGTAGAACAGGAAGTAAGTACTGAACCAGAATTACCAATCATAACTACACAAATAGATAACAAAACTGGAGTAAGTTATACGTATGATAGAAGCATACAATTTTATACTTGTTCGATTTGTGATGCAAAAATCAAAACTTTATTCTCTTTACGAAAACATTTACGACAACACCGAGACGGCAAACAATATTTTTGCGTCGTTTGTAATAACGGTTTTAAATACGAGAAGAATTTAGAGGAACATAAATTAAGTCATTGTGAATTTTATGATAAAACATTAGCACCACTGCGAAATAAACCCGGTGTTAAAGATAATTTTATATGTGAAACTTGTGGTGTTATTATGAAAGACCGGTGCAACTTTAACCAGCACGTCAAACGGCACAGTGATGAGCGGCCATTCGTGTGTGAAATTTGCGGCAAACGATTCAAACTTGCATCTGTGTTAGGCAGTCACAAACATTCACATTCAGTCGAATCGAAATTCCAGTGTACTATATGCCCATCTAAGTTTCGATACCGCGAAACACTTCGCACGCATTTACAACGTCATGCTGGTATTAAACCGTATAAGTGTGAAGTATGCGGTAAAGCATTTGTTAGAAAAGATAATATGCAGAAGCATCGCAACACACATATTGATATCGATAGCTCAATTTTAAAATGTCCTATTTGTGGCATTACTTACAAAACTTCGTATCGGTTGAAAGCGCATATGTATGTGCATTCTACAGTTAAAGAATTTAATTGTGAAGTCTGCGATCGCGGCTTTTTATATGAGCATACGTTGCGGTTTCATATGCGGAAGCATACATCTGTTAAGCCATATAATTGTCATATTTGTGCTAAAGGATTTCTGGTTGAGCATAGATTAAAACGCCATTTGAGACAACATGCTCGGAATAATGTGTTTTCTGAGACACAGTTTATTTCAAATGATGCACAATCACAACCAAGTGATACTGATGGACCGCTAGTATTAGATTATCCTGATACACGGTTAGAAGATGTCGATTTTGATAAATCAGATAATTCTGATAAACAATTAACACCCGATTTAACGTATAACCGAAGTTTACCTATGATCTTTTAA
Protein Sequence: MKDKESDDDISYYDMMLTCVPNLISEDDQLSTLICIECQEHLIDTYGLIDKWMEARKVLNKYKKQMNFTFYTDNDTYIHTNTNSYNNLNDLITSVVSKDTVSNHSYYDHTYGTTNSKEFLKRVMADTILPKNYIEKKSTSLTNCDFSKVYSAIKANKRSTYTLVDLEQPDKTVYFNADDETKKYVCLSCSKYFKSVTYLFIHLVNHKQNQKFNCKKCFKVFQYEALLKNHEERLCAFDVKPINLNVDKIPKINITFEPGKNASCEPKINATFETDLNIEPGLSVVEQEVSTEPELPIITTQIDNKTGVSYTYDRSIQFYTCSICDAKIKTLFSLRKHLRQHRDGKQYFCVVCNNGFKYEKNLEEHKLSHCEFYDKTLAPLRNKPGVKDNFICETCGVIMKDRCNFNQHVKRHSDERPFVCEICGKRFKLASVLGSHKHSHSVESKFQCTICPSKFRYRETLRTHLQRHAGIKPYKCEVCGKAFVRKDNMQKHRNTHIDIDSSILKCPICGITYKTSYRLKAHMYVHSTVKEFNCEVCDRGFLYEHTLRFHMRKHTSVKPYNCHICAKGFLVEHRLKRHLRQHARNNVFSETQFISNDAQSQPSDTDGPLVLDYPDTRLEDVDFDKSDNSDKQLTPDLTYNRSLPMIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -