Basic Information

Insect: Nebria ingens
Gene Symbol: -
Assembly: GCA_018344505.1
Location: JADQWA010000207.1:595854-599358[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.4e-05 0.002 18.5 0.1 1 23 187 209 187 209 0.97

2 7 0.0049 0.39 11.3 3.8 2 23 214 235 213 235 0.98

3 7 1.4e-09 1.1e-07 31.9 1.0 1 23 241 263 241 263 0.99

4 7 6.4e-05 0.0052 17.2 3.3 3 23 271 291 269 291 0.96

5 7 3.7e-06 0.0003 21.1 0.3 3 23 299 319 297 319 0.97

6 7 2.6e-05 0.0021 18.4 0.8 1 21 325 345 325 346 0.96

7 7 0.037 3 8.5 0.7 8 23 344 359 343 359 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.4e-05	0.002	18.5	0.1	1	23	187	209	187	209	0.97
2	7	0.0049	0.39	11.3	3.8	2	23	214	235	213	235	0.98
3	7	1.4e-09	1.1e-07	31.9	1.0	1	23	241	263	241	263	0.99
4	7	6.4e-05	0.0052	17.2	3.3	3	23	271	291	269	291	0.96
5	7	3.7e-06	0.0003	21.1	0.3	3	23	299	319	297	319	0.97
6	7	2.6e-05	0.0021	18.4	0.8	1	21	325	345	325	346	0.96
7	7	0.037	3	8.5	0.7	8	23	344	359	343	359	0.93

Sequence Information

Coding Sequence: ATGGATGAAACTGTTGAAACAGAAACAACAAATTTAGAGCGGATTTGTCGCACTTGTTTAAATGAATGTAACGATTTGAGGTCTTTATTCGAAAATACGTTGTGCGAAATGTTGGATAATTTAGCATCTGTTAAAGTAAATCTAGAAGATGGTTTACCAAATATGGTATGTGCGAATTGTGCTTTTCAATTAAAATTAGCGTTTTCTTTTAAACAACAATGCCAAAAGTCTGAGTCGCAATTACGAGCTGCCTTTTGTAATGAAACTATAACGTTGGAAGACTTTCAAAAAAGTTTTAACATCAAAAATGAAGAAACAATCACCAAAATTGTCTATGAAGAAACGAAAGAAGAGATAATAAATGAAAAAGTTGAAGATTTTGATGAAACTCATTCAGATGCAATTAAAATTGAGGAAACCAAATCGGAACTTCGACGTAGTTCGAGGGTTGTTAAACAACCAGATGTGCTCGATACTTCCGAAAGTGATTCGGAGAAAATTGATAATCCGTTGAAAATCGAAGCGAATGAATCAAATCAAGATGCAGACGGGATTAGATATGAATGCGAAGAATGTAGCAAAGTATTTAAAACGGAAATTACATTAATTGTTCACGCGGCGAAACATAAACAAAAGAAAAAATGCGGTATTTGTCGCAGAGAATTCCAATTTATGAAGCAATTACATGATCACATGCGGTCACATAAGGATTATCGGCCGTTTAAATGTAAGGATTGTGGAAAAACGTTCTCTGTGAATGCAAGTCTAGCAAAACATATGCGAACTCATGGAGGAGAACGCAAACATCTGTGTACGACATGCGGCAAACGCTTTTACGAACCAAATCATCTTATGATACACACGCGTGTGCATACCGGTGAGAAACCGGTAATTTGTGACGTTTGCGGTAAACGTTTTGCTGATCCACATAGTTTACTTGCCCATAACAAAACGCACACCGGCGAAAAGAACTACGAGTGTACGACGTGCGGTAAACGTTTTGCGCACTCGTTTGTTCTTACTGCACATTATAGATATACACAATCTGGACAATTGGCCGCCCACAGAAGAACACACGTAGATGAAGATGTTAAAATAGAATTACAATTGTTGTAA
Protein Sequence: MDETVETETTNLERICRTCLNECNDLRSLFENTLCEMLDNLASVKVNLEDGLPNMVCANCAFQLKLAFSFKQQCQKSESQLRAAFCNETITLEDFQKSFNIKNEETITKIVYEETKEEIINEKVEDFDETHSDAIKIEETKSELRRSSRVVKQPDVLDTSESDSEKIDNPLKIEANESNQDADGIRYECEECSKVFKTEITLIVHAAKHKQKKKCGICRREFQFMKQLHDHMRSHKDYRPFKCKDCGKTFSVNASLAKHMRTHGGERKHLCTTCGKRFYEPNHLMIHTRVHTGEKPVICDVCGKRFADPHSLLAHNKTHTGEKNYECTTCGKRFAHSFVLTAHYRYTQSGQLAAHRRTHVDEDVKIELQLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -