Basic Information

Insect: Nebria ingens
Gene Symbol: -
Assembly: GCA_018344505.1
Location: JADQWA010000243.1:329484-336855[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.14 11 6.7 2.0 7 23 191 207 191 207 0.96

2 10 9.6e-06 0.00078 19.8 5.3 1 23 213 235 213 235 0.98

3 10 0.00032 0.026 15.0 2.5 1 23 241 263 241 263 0.95

4 10 2.7e-06 0.00022 21.5 0.8 1 23 269 291 269 291 0.97

5 10 3.4e-06 0.00027 21.2 0.1 1 23 297 319 297 319 0.97

6 10 0.00016 0.013 15.9 1.7 1 23 324 346 324 346 0.97

7 10 6.3e-06 0.00051 20.3 0.6 1 23 352 374 352 374 0.95

8 10 0.00085 0.069 13.6 0.0 2 23 381 402 380 402 0.96

9 10 0.019 1.6 9.4 4.9 3 23 460 480 458 480 0.95

10 10 0.00038 0.031 14.7 6.9 1 23 490 512 490 512 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.14	11	6.7	2.0	7	23	191	207	191	207	0.96
2	10	9.6e-06	0.00078	19.8	5.3	1	23	213	235	213	235	0.98
3	10	0.00032	0.026	15.0	2.5	1	23	241	263	241	263	0.95
4	10	2.7e-06	0.00022	21.5	0.8	1	23	269	291	269	291	0.97
5	10	3.4e-06	0.00027	21.2	0.1	1	23	297	319	297	319	0.97
6	10	0.00016	0.013	15.9	1.7	1	23	324	346	324	346	0.97
7	10	6.3e-06	0.00051	20.3	0.6	1	23	352	374	352	374	0.95
8	10	0.00085	0.069	13.6	0.0	2	23	381	402	380	402	0.96
9	10	0.019	1.6	9.4	4.9	3	23	460	480	458	480	0.95
10	10	0.00038	0.031	14.7	6.9	1	23	490	512	490	512	0.97

Sequence Information

Coding Sequence: ATGTGTGCAGCACCTAATTTAACGGGTACCTTTGGCTATTGGCACCCAGCTGATACCCATTCGACACCTACACCTAGTATAACAGATACAGCATCACTGAGTTGTTATGGACCACCCAGTATTTTACAAGATGCATCCAAGCTAAAATCTGTACGTCGACCAATGTTTCTTGTCAATAACAAACATGCCCAGGATGTCTTTACAAACAATACATGCGAAAAAGGATGTCCGTGCGAACCAGTGCCACTTTCGTTTGGGGAAAAAGACGGTAAACATTTTATGACACCACTTGGTCCGCTACAATTAACGCCGGAAGAATGCAATGAGATTTTAATGAAACGTGCTGCAGCGGCTTCGGGTCCGGTTGGAGGTTCGAATCCCATTCAAATGTCAGCACACTCGCCCAGCTCGCCACCGGACACGAAACCTGTGCCGCAGCCACCGCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAAAACATTCGCCCACAAACACTGCTTGAACACGCATCTTTTGTTGCATTCGAGTCTGCGACCGTACCAGTGTCCCGAATGCAAGAAAAGCTTCACACTCAAACATCATCTTTTGACACATTCACGAGTGCACAGTCGTGAACGGCCCTTCATTTGCACCGAGTGTGGCCGGACGTTTCCGCTTAAACGTCATCTTGTTACACACTCGAAATTTCACGCGGGCGAACGACCGTTCGTCTGCGAGGACTGCGGCGAATCATTTGCGCAAAAAGATCATCTTGTGATGCATTCAAGATTCCATGGTTCACTGAATCCATTCGTTTGTCCGGACTGTGGCGCCACTTTCGCTAGAAAATTCGAGCTCGTAAATCACGGCAGATTGCATGGACGTGTTCCACATAGTTGTCCAGTTTGCAATAAAGAATTCCTACAGAAACGAACATTGGTAGCTCATATGAGATTTCATTCCGGCGATCAACCCTTTGCATGTGTACAGTGTGGCGAATCATTTCGGTCGAAATCTGAACTAACTCAGCACTCCAAACTCCATTCACTCGATCGTCCGCTCTCATGTCGCGAATGTGGGAGCGCCTTCAACAGTCCCGAGGCGTTGGCTTTGCATGTCCGTTTGCACAGCGGCGATTCAGCTCTCGTAACAGATCTGTGCGCCCTCACGGCTTCCCTCCAATCAGGAGGAGGATTCTCGCTCTCAGTTCCACAAGCGAACACCACTACTTCAGCGCCATCACTAAGTGGTCACGCTGCAGCGCATCATGTGAATGGAATAAACAAAAAAACCCACTTATGCCAACATTGCGGTAAAGGATTTGCGGCTCGGCATGGTTTATTGCAGCATAATAAGCGGCATCCAGCTGGAGGGTGCACCTTACGGACGCATGTCTGTCCTACGTGTCATAAAGGGTTCTTCCAGAAAAATCACTTGTTGTTGCATCAGCGGCAGCACATGGAACAGCCGAGACAACCGGGACCGGCTCCCAGTCAAGAGCAACAACAACAGCATCAGCAACAACAACAGCAACAAGCACAGCAGCAGCAACAACAAGTACAACAACAGCAACAGGCGCAGCAGCAACAACAACAAGTGCAACAACAAGTGCAACAGCAAGTACAACAACAACAGCAGCAGCAGCAAGAACAACAACAGCAGCAACAACAACAGCAGCAGCAACATCAACAAGTGCAACAGCAGCTCCCGTAA
Protein Sequence: MCAAPNLTGTFGYWHPADTHSTPTPSITDTASLSCYGPPSILQDASKLKSVRRPMFLVNNKHAQDVFTNNTCEKGCPCEPVPLSFGEKDGKHFMTPLGPLQLTPEECNEILMKRAAAASGPVGGSNPIQMSAHSPSSPPDTKPVPQPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKTFAHKHCLNTHLLLHSSLRPYQCPECKKSFTLKHHLLTHSRVHSRERPFICTECGRTFPLKRHLVTHSKFHAGERPFVCEDCGESFAQKDHLVMHSRFHGSLNPFVCPDCGATFARKFELVNHGRLHGRVPHSCPVCNKEFLQKRTLVAHMRFHSGDQPFACVQCGESFRSKSELTQHSKLHSLDRPLSCRECGSAFNSPEALALHVRLHSGDSALVTDLCALTASLQSGGGFSLSVPQANTTTSAPSLSGHAAAHHVNGINKKTHLCQHCGKGFAARHGLLQHNKRHPAGGCTLRTHVCPTCHKGFFQKNHLLLHQRQHMEQPRQPGPAPSQEQQQQHQQQQQQQAQQQQQQVQQQQQAQQQQQQVQQQVQQQVQQQQQQQQEQQQQQQQQQQQHQQVQQQLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01041165;
90% Identity: iTF_01041165;
80% Identity: -