Ning005266.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010001183.1:67197-70398[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00037 0.03 14.8 1.7 2 23 156 177 156 177 0.98 2 12 1.7e-05 0.0014 19.0 4.8 2 23 184 205 183 205 0.97 3 12 0.00098 0.079 13.4 3.5 1 23 214 236 214 236 0.97 4 12 8.3e-05 0.0067 16.8 0.5 1 23 304 326 304 326 0.97 5 12 1.5e-05 0.0012 19.1 4.0 2 23 333 354 332 354 0.97 6 12 0.0022 0.18 12.3 1.7 3 23 380 401 378 401 0.94 7 12 0.00025 0.02 15.3 8.9 1 23 474 496 474 496 0.96 8 12 0.0012 0.097 13.2 0.7 1 23 502 525 502 525 0.95 9 12 2.1e-06 0.00017 21.8 0.9 1 23 530 552 530 552 0.98 10 12 2.2e-06 0.00018 21.8 5.2 1 23 564 586 564 586 0.97 11 12 0.00068 0.055 13.9 0.1 1 17 593 609 593 610 0.93 12 12 0.62 50 4.6 0.0 9 23 745 761 743 761 0.86
Sequence Information
- Coding Sequence
- ATGATTAACAAAGATAATAGTTTGTGCCTGGACAAGATATGCCGGTCTTGTATGTTGGAGAACAAGGAAATGAGATCGGTTTATGAATCGAACACAGATGCGGTGCAGCTTGCTGAAATGATAATGGCCTGTGCATCAGTTCAGGTGGCATCCGGTGATGGTTTGCCCAATCTTATTTGTCCCAAATGCGAAGAACAGTTGAACATTGCCTACCTATTTAAACAGCAATGCGAACGAACTGATACGTCTTTGCGAGAATATACGAATCAGGCATTGTCCAGTTCAATCAAAGAAGAATCCGAATCGTTGGATATTGTTGTCAAACCGGATATTGACGTACTGGAAATTTACGACGAAGCTGACGATGGTCGAAATAACGACGATACGTTCGGTTCAGGTTCGGAGAGTGTTCACAGTAGTTATTCGGCAACAGTTGGAAGGAAAAAGAAATCTCCAAAGACACGACAGTGCAGATATTGTAACAAGATGCTGTCGACGAAGGAGGGCCTGAAACTTCACGAACGGCGACATACAGGTGAGAAACTGAAGACATGCCCAGTATGCCATACCACATTCACCAAATCCAATCACCTGATTCGACACATGCAACTCCATAATAAACCAACAGACGAGTACAAGCACACGTGCCAAGAGTGCGGCATGGGCTTCATGAAGGCCACGCATCTACTCAAACACAAGCGCGAGCACAAGAAGACTACGGACAAGGATACATCCGGCAGTGCCAGTGGTGAGCCGTCCCAAAGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGCCGCAAGTGAAGAACGAAGTAGACAGTGACGGTGCCGGTGACCAGCTCGACGACAACAGGCCCAAGCTGCGCCCCAAGAAGGAACCATCGAACGATCATCATCCTTGTAAGGTGTGCAATAAACTTCTTACTACAGCCGCTGGTCTCCAAATTCATATGCGGCGTCATACCGGCAAAAATCTCTCCACATGCTATATCTGTCTTAAATCGTTTACTAAAACAAGTCATCTCAATCGACACATGTTGACCCATGGCGTGACGCCAATGAAGAATGCAGCCGTCGCGAAGGAGAAGACCACCGAACCAAAGGAGAAAAAATACTTGGCGTGTGAGTTTTGCGATCGGAAATTTGTGTACCGCAAAAGTTTCTTGCATCACATTCAGCTCGAACATCAAATATCCGAAGACAGCGACACACCGCTCAGTGAATACGCAACTATTGTTACCAAATCGAAAATATCGGACGAGAATGGTGCAAATGGAAACAAAGATGGCACCGGTGACAATGAACACGACAATGAGACTAATCCTGGCGGTAGCACGTTGCAAGGTGAACAAGATGACTTTGAGATGATGATGCTGGAACAGGACGAAGCGAAAAAAGTGCAGCACGTTTGTCATGTGTGTAATCATAAATTCACGCGTGCAAATCATCTGACGCGACACATGACGCTGCACCGCGCGGTACTGCTACACAAATGCGAGCGGTGTGAAAAGGCGTTCATGACCGCTGAGTACCTAGCGTCGCATGTGCAAGAGTACCACGTGGACCGACCGTACGTGTGTTCGCTGTGCAACAAACCATTTAGTCGTGGCGAACATCTCATCCGCCATTTGAAAGTACACGACAAAGACGCGCCGGCCGGCAAAGACGACCAACACAAGTGTTCCATCTGCGAGAAAACGTTCTCACGTTCTGATCATTTGGCGCGACACACGAAGTTGCATCTCGCCCAGGACAAGCGGCACGTTTGCGGCGAGTGCGGCAAAGCGTTCAATCGCCTGGATAATTTGCGTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCCCGCTTCATCCAAAGCGGGCAGCTAAAGGCGCACAGACGCTCGCAGGGACACTGGCTGGAGACGCCGCCCGAGTTGAAAGGCGCGCATCGCGTCACCCCGGTCACGCCACTTGTGAATCCGCCGCCGATTAAATTCAAGACTCGCGTGCAGCGCATCAAAGAAGAACCGACGATACTCGGCCACACCATTGGTCTTGGTGCAGTCGCTGCAGCTAAACAACACACGACACAAGCAACAGGTATCGTATCGATGGCTGACAGTACTGGTGGACCTTCGGCAGCGTCATTCGTTGCTTTCGTACACAAGTCTCCACAAAACGAACAGCAAGTGCACAATTTCAGTGTGTCCAATTTGAGTAATCGCGATGCGATTGTCCTGAATACTAGTACTGCTGGTGGCTCGCACATGACCGGCGGTGATCAATCGCAGGCCAGCGGTGCCTCGTCGTTTCAATCCAACGTAGAACCTAGCACCTCATTCGCAAATACATTTACCGTTAGTAGCGAGGGTTACACCTATCAGTCGTACGGCTAA
- Protein Sequence
- MINKDNSLCLDKICRSCMLENKEMRSVYESNTDAVQLAEMIMACASVQVASGDGLPNLICPKCEEQLNIAYLFKQQCERTDTSLREYTNQALSSSIKEESESLDIVVKPDIDVLEIYDEADDGRNNDDTFGSGSESVHSSYSATVGRKKKSPKTRQCRYCNKMLSTKEGLKLHERRHTGEKLKTCPVCHTTFTKSNHLIRHMQLHNKPTDEYKHTCQECGMGFMKATHLLKHKREHKKTTDKDTSGSASGEPSQSPXXXXXXXXXXXXXTPQVKNEVDSDGAGDQLDDNRPKLRPKKEPSNDHHPCKVCNKLLTTAAGLQIHMRRHTGKNLSTCYICLKSFTKTSHLNRHMLTHGVTPMKNAAVAKEKTTEPKEKKYLACEFCDRKFVYRKSFLHHIQLEHQISEDSDTPLSEYATIVTKSKISDENGANGNKDGTGDNEHDNETNPGGSTLQGEQDDFEMMMLEQDEAKKVQHVCHVCNHKFTRANHLTRHMTLHRAVLLHKCERCEKAFMTAEYLASHVQEYHVDRPYVCSLCNKPFSRGEHLIRHLKVHDKDAPAGKDDQHKCSICEKTFSRSDHLARHTKLHLAQDKRHVCGECGKAFNRLDNLRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARFIQSGQLKAHRRSQGHWLETPPELKGAHRVTPVTPLVNPPPIKFKTRVQRIKEEPTILGHTIGLGAVAAAKQHTTQATGIVSMADSTGGPSAASFVAFVHKSPQNEQQVHNFSVSNLSNRDAIVLNTSTAGGSHMTGGDQSQASGASSFQSNVEPSTSFANTFTVSSEGYTYQSYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -