Basic Information

Insect: Nebria ingens
Gene Symbol: -
Assembly: GCA_018344505.1
Location: JADQWA010000703.1:4496-7127[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.52 42 4.9 0.5 6 21 12 27 7 28 0.87

2 14 6.6 5.3e+02 1.4 0.1 1 12 161 172 161 175 0.90

3 14 0.059 4.8 7.8 1.9 1 20 329 348 329 350 0.95

4 14 4.5e-06 0.00036 20.8 2.1 1 23 357 379 357 379 0.99

5 14 1.7e-06 0.00014 22.1 0.6 1 23 396 418 396 418 0.98

6 14 0.018 1.4 9.5 0.9 1 23 448 469 448 469 0.83

7 14 2.4e-06 0.0002 21.6 3.1 1 23 475 497 475 497 0.98

8 14 0.011 0.9 10.1 5.3 3 23 505 525 503 525 0.95

9 14 0.00019 0.015 15.7 2.7 1 23 531 553 531 553 0.99

10 14 5.9e-07 4.8e-05 23.6 4.2 1 23 559 581 559 581 0.98

11 14 0.0012 0.098 13.2 6.7 1 23 587 609 587 609 0.98

12 14 1.9e-05 0.0015 18.8 0.2 1 23 615 637 615 637 0.98

13 14 1.5e-05 0.0012 19.2 0.8 1 23 641 663 641 663 0.98

14 14 0.00052 0.042 14.3 0.1 1 23 671 694 671 694 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.52	42	4.9	0.5	6	21	12	27	7	28	0.87
2	14	6.6	5.3e+02	1.4	0.1	1	12	161	172	161	175	0.90
3	14	0.059	4.8	7.8	1.9	1	20	329	348	329	350	0.95
4	14	4.5e-06	0.00036	20.8	2.1	1	23	357	379	357	379	0.99
5	14	1.7e-06	0.00014	22.1	0.6	1	23	396	418	396	418	0.98
6	14	0.018	1.4	9.5	0.9	1	23	448	469	448	469	0.83
7	14	2.4e-06	0.0002	21.6	3.1	1	23	475	497	475	497	0.98
8	14	0.011	0.9	10.1	5.3	3	23	505	525	503	525	0.95
9	14	0.00019	0.015	15.7	2.7	1	23	531	553	531	553	0.99
10	14	5.9e-07	4.8e-05	23.6	4.2	1	23	559	581	559	581	0.98
11	14	0.0012	0.098	13.2	6.7	1	23	587	609	587	609	0.98
12	14	1.9e-05	0.0015	18.8	0.2	1	23	615	637	615	637	0.98
13	14	1.5e-05	0.0012	19.2	0.8	1	23	641	663	641	663	0.98
14	14	0.00052	0.042	14.3	0.1	1	23	671	694	671	694	0.96

Sequence Information

Coding Sequence: ATGAGTTCAATACAGTTGGACTGCCCATTATGTTGTAGTGAGACTTTTGATTCATCGCAATCGCTAAAATACCATTTGTTAAGTTTAATTGATAATATTTTGTGCCCTGCATGTGGCAGTCGCTTTCAAACTATTCTTGAGCTAGCTGAACATTTGGATTCTGAATGTGACAAAACATCAGATGAAGACGCGGTAAATTCAAATGAAATCAGCTTGGTGAATATCAAAATAGAAGCTGAAGATTACACAGACGAGCAAATGAGTAGTAGCATACTTGCGAAAGCACTTTTAAGCCCGCATACGAAAAATAGTGCTTTTGTAAAAACAGATGAACAAGACAATGAAAACGACGATACAACTGAAGATAGATATTTATTAGATGAAGACGAAAATGATACAGAGGCCATGGAACATGAAGCTGATGCAGGTGAAAATAATGATGCACAAACTAATGAAAATGAATCACCAGAAGACGATGTTTACTCGTGTTTGAGTTGTGGCGTTAATTTTACTTCCATTGTTGATCATATCCAGGAATACCATGAAGGCGAAGAAGTTGTTGTTGAGATGTCTGAGAATGATAACGAACAAGAAGCGCAAACGAAAAGTGACCAGGATTTATTAGCAAGCCTGGCAGACGGCGCAACAATAATATCTGAAGACGGTGTTATTTTGGCGGGTAGCAACTATGAAGAAGATGATGACGAAATGCAAAGTGGCGAAAGCCAGGAGGTGTTAGAAGTTAGCAACCGTGTACGAATGCCACAGCTTCTAAATACAATCAAACAAGAAGACTGCGTTGATAAGGACGGTCGTTTGTACACGCGCAAAGTCGTACAAATTGAAAAATTCTGGGACGAAGAATCCGTCAAAAGCCGCGTACCCCTAATATTAAAATACATTGTTGATGCAGACGGCGCTTTACAAAAAGTTAACAGTAACCGGCACAATGATATCCCCGACGATGTTCAAGTATTGGAAATATTCCAATGCAGTAGTTGTAGTGTTCAATTCTCAAAACGGGAACAATTTAATGTGCATGTTTGTGATCCGGAAGTCGCAAGTGAGTATAGATGTTCAATGTGTGAGGCAACGTTTACTAATTCCCAATCGTTATGCGCGCATATGAAAATACACAAATCGATTAAACATGAACCGTCTCAAGAACCACCGGCAACTGGCCCGTTTGTTTGTAACGTTTGCGATACAGTATTCCCAAGTAATAAATCGCTTCGTTTGCATCGTCGCATGCATGATCCGATTAAAGCGAAAGAAATCGACGCGCCGGTTGAGTACGGACTAAATGGTGGTGAAACGAGCACTACAAAACCACGCGAAATGTTCAAATGTAAAGTTTGTGGTAAGAACTACGATAAAAGTTACGAAGAAATCCACATGGCGTACCATAGTGGTGTCAACCATTACGATTGTTACATTTGCAATAGGAAGTTCTATACTCATAGTAATTTAGAGATGCATATGCGAGTGCATGGTAGTGAAAAAGGGCATTTATGTACACATTGCAAAAAAGGTTTCTTAACTCAAGAAAGTCTGCAACAACATTTGAAACAACATTGCGCATCTAGACCCTATCAATGTAGTTATTGTTCGCGAAGATTCGCCCGTCCTCATGAGAAAGTCAAACATGAGCGTATTCACACCGGTGAGAAGCCGCACGAGTGTGAAATTTGTGGCAAAACATTCCGTGTCAGCTACTGCCTAACTCTGCACATGCGTACCCATTCTGGTTATCGTCCATACGTCTGCCAACATTGTGGTAAACGTTTCAAAGCCCATAGCGTCTATAACCATCATTTACTCACCCATTCTGATGTCCGAGGTTACAAATGTCCGTATTGTCCTAAAGCTTTCAAAACGGGTGTTCAATTGGCGGGCCATAAAAACAGCCATACTAAACCGTTTAGTTGTACTCATTGTAACAGACCGTTCGCTTCGCTTTACGCGGTTCGCGCTCATATGGAGACGCATAAACGCGAAAACAACCTGAAATATAATTGCTATTTGTGTGGGGCGTCGTACGCAAGAGCGTTCGCATTGCGTGATCATATTAAAGAGGTGCATGTTGATGCTCCGCAAAACGGTAATATTGCGTTGGATATTATCGAAGAAGGAATGGAAGCAACTGGTCAAATTTTACCGGAAGGGGATGATATTTCAATGGTGACTCTAGAAATGGGCTCAGAGATGGATGAAGAAGCTAGTGTTCAATAG
Protein Sequence: MSSIQLDCPLCCSETFDSSQSLKYHLLSLIDNILCPACGSRFQTILELAEHLDSECDKTSDEDAVNSNEISLVNIKIEAEDYTDEQMSSSILAKALLSPHTKNSAFVKTDEQDNENDDTTEDRYLLDEDENDTEAMEHEADAGENNDAQTNENESPEDDVYSCLSCGVNFTSIVDHIQEYHEGEEVVVEMSENDNEQEAQTKSDQDLLASLADGATIISEDGVILAGSNYEEDDDEMQSGESQEVLEVSNRVRMPQLLNTIKQEDCVDKDGRLYTRKVVQIEKFWDEESVKSRVPLILKYIVDADGALQKVNSNRHNDIPDDVQVLEIFQCSSCSVQFSKREQFNVHVCDPEVASEYRCSMCEATFTNSQSLCAHMKIHKSIKHEPSQEPPATGPFVCNVCDTVFPSNKSLRLHRRMHDPIKAKEIDAPVEYGLNGGETSTTKPREMFKCKVCGKNYDKSYEEIHMAYHSGVNHYDCYICNRKFYTHSNLEMHMRVHGSEKGHLCTHCKKGFLTQESLQQHLKQHCASRPYQCSYCSRRFARPHEKVKHERIHTGEKPHECEICGKTFRVSYCLTLHMRTHSGYRPYVCQHCGKRFKAHSVYNHHLLTHSDVRGYKCPYCPKAFKTGVQLAGHKNSHTKPFSCTHCNRPFASLYAVRAHMETHKRENNLKYNCYLCGASYARAFALRDHIKEVHVDAPQNGNIALDIIEEGMEATGQILPEGDDISMVTLEMGSEMDEEASVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00873275;
90% Identity: iTF_01039514; iTF_01041138;
80% Identity: -